University of Rostock

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Rat connectome



Lateral striatum right


Abbreviation
CPul
Color       
Superior regionsCaudate putamen

SynonymsAbbr.Language
Lateral striatumCPul 
Lateral caudate putamenCPul 

SubregionsSide
Lateral striatum chemoarchitectonic compartmentsright
Lateral stripe of the striatumright
Ventral one-third of the lateral striatumright
Ventral one-half of the lateral striatumright

Output to

NameSideAbbr.WeightDetails
Substantia nigra A9ipsiSN3
Substantia nigra lateral partipsiSNL3
Substantia nigra reticular part lateral halfipsiSNRLh-0.5
Ventral tegmental area A10 caudal two-thirdsipsiVTAcptt2
Parafascicular thalamic nucleusipsiPF1.5
Submedius thalamic nucleusipsiSub1
Bed nucleus of the stria terminalis lateral division dorsal partipsiBSTLD0.5
Motoric regionsipsiM-2
Motoric regions layer 1ipsiMRL1-2
Motoric regions layer 2ipsiMRL2-2
Motoric regions layer 3ipsiMRL3-2
Motoric regions layer 5ipsiMRL5-2
Motoric regions layer 6ipsiMRL6-2
Motoric regions layer 4ipsiMRL4-2
Sensory regionsipsiSR-2

Input from

NameSideAbbr.WeightDetails
Substantia nigra compact part medial tiercontraSNCM-0.5
Substantia nigra lateral partcontraSNL3
Pedunculopontine tegmental nucleuscontraPPTg0.5
Dorsal raphe nucleus caudal partcontraDRC0.5
Dorsal raphe nucleus dorsomedial subdivisioncontraDRdm1
Dorsal raphe nucleus median partcontraDRM1
Dorsal raphe nucleus rostral partcontraDRr1
Dorsal raphe nucleus ventromedial subdivisioncontraDRvme1
B6 subnucleuscontraB60.5
Parafascicular thalamic nucleuscontraPF0
Basolateral nucleus caudal partcontraBLCP-0.5
Basolateral nucleus rostral partcontraBLRP0.5
Anterior cingulate cortexcontraACC0
Cingulate cortex layer 3contraCgL31
Cingulate cortex layer 5contraCgL53
Cingulate cortex layer 6contraCgL61
Frontal association cortexcontraFrA0
Frontal association cortex rostral partcontraFrAr2
Granular insular cortexcontraGI1
Lateral agranular prefrontal cortexcontraAGl-1
Anterior part of primary motor cortexcontraAGlA2
Lateral agranular prefrontal cortex layer 5acontraAGlL5a1.5
Posterior part of the lateral agranular prefrontal cortexcontraAGlP1.5
Whiskers motor cortexcontraWMCx-0.5
Medial agranular prefrontal cortex rostral partcontrarAGm1
Primary somatosensory cortex layer 5contraS1L53
Primary somatosensory cortex layer 6contraS1L61
Primary somatosensory cortex layer 3contraS1L31
Primary somatosensory cortex forelimb region anterior partcontraS1FLA1
Primary somatosensory cortex rostral partcontraS1r1.5
Central dysgranular zone between E4 whisker and forelimb barrel field layers 5contraS1BFcdysL5-0.5
Central dysgranular zone between E4 whisker and forelimb barrel field layers 6contraS1BFcdysL6-0.5
Posterior dygranular zone between whisker and trunk representation layer 5contraS1pdyL5-0.5
Posterior dygranular zone between whisker and trunk representation layer 6contraS1pdyL6-0.5
Somatomotoric regions layer 3contraSMRL30.5
Somatomotoric regions layer 6contraSMRL60.5
Midbrain extrapyramidal areaipsiMEA2
Peduncularpontine nucleus rostral partipsiPPNR-0.5
Substantia nigra A9 dorsal partipsiSND-0.5
Substantia nigra compact partipsiSNC2
Substantia nigra compact part dorsal tieripsiSNCD3
Substantia nigra compact part lateral tieripsiSNCL3
Substantia nigra lateral partipsiSNL3
Substantia nigra medial partipsiSNM-0.5
Substantia nigra reticular partipsiSNR1
Substantia nigra reticular part lateral tieripsiSNRL-0.5
Substantia nigra intermediate partipsiSNim-0.5
Ventral tegmental area A10ipsiVTA2
Ventral tegmental area A10 caudal partipsiVTAcp-0.5
Ventral tegmental area A10 lateral partipsiVTAL0.5
Ventral tegmental area rostral partipsiVTAR-0.5
Parabrachial pigmented nucleusipsiPBP3
Retrorubral nucleusipsiRR3
Pedunculopontine tegmental nucleusipsiPPTg2
Mesencephalic reticular formationipsiMRF2
Parabrachial nucleusipsiPB0
Dorsal raphe nucleusipsiDR2
Dorsal raphe nucleus caudal partipsiDRC1
Dorsal raphe nucleus dorsomedial subdivisionipsiDRdm2
Dorsal raphe nucleus median partipsiDRM2
Dorsal raphe nucleus rostral partipsiDRr2
Dorsal raphe nucleus ventrolateral partipsiDRVL1
Dorsal raphe nucleus ventromedial subdivisionipsiDRvme2
Rostral linear nucleus of the rapheipsiRLi3
B6 subnucleusipsiB61
Tuberomammillary nucleusipsiTuM2
A8 dopamine cells retrorubral groupipsiRRF3
Central medial thalamic nucleusipsiCM2
Central medial thalamic nucleus caudal partipsiCMca2
Central medial thalamic nucleus ventrolateral partipsiCMVL1
Centrolateral thalamic nucleusipsiCL2
Centrolateral thalamic nucleus anteromedial partipsiCLAM3
Centrolateral thalamic nucleus dorsal partipsiCLD-2
Centrolateral thalamic nucleus posterolateral partipsiCLPL3
Centrolateral thalamic nucleus ventral portionipsiCLV-0.5
Centrolateral thalamic nucleus ventrolateral partipsiCLVL1
Paracentral thalamic nucleusipsiPC3
Paracentral thalamic nucleus ventral portionipsiPCV-0.5
Paracentral thalamic nucleus ventrolateral partipsiPCVL1
Parafascicular thalamic nucleusipsiPF2
Parafascicular thalamic nucleus caudal partipsiPFc-0.5
Parafascicular thalamic nucleus lateral partipsiPFL3
Parafascicular thalamic nucleus ventral partipsiPFV-0.5
Parafascicular thalamic nucleus ventrolateral partipsiPFvl1
Posterior thalamic nuclear groupipsiPo3
Ventrolateral thalamic nucleusipsiVL3
Ventromedial thalamic nucleusipsiVM3
Ventromedial thalamic nucleus dorsal partipsiVMTd-2
Intralaminar nuclei dorsal partipsiILND-0.5
Intralaminar nuclei ventral partipsiILNV-0.5
Parafascicular centre-median complexipsiPFCM2
Ventrolateral regions of the rostral intralaminar nucleiipsiVLrILN-0.5
Laterodorsal thalamic nucleus dorsomedial partipsiLDDM1
Posterior groupipsiPTG2.5
Ventral medial nucleus of the thalamusipsiVMT2.5
Basolateral amygdaloid nucleusipsiBL2
Basolateral nucleus caudal partipsiBLCP-0.5
Basolateral nucleus rostral partipsiBLRP3
Central amygdaloid nucleus medial division ventral partipsiCeMv-0.5
Globus pallidusipsiGP-0.5
Ventral pallidumipsiVP1
Cerebral cortexipsiCEC-0.5
Cerebral cortex layer 5ipsiCCL5-0.5
Cingulate cortexipsiCg2
Anterior cingulate cortexipsiACC0
Cingulate cortex layer 3ipsiCgL31
Cingulate cortex layer 5ipsiCgL53
Cingulate cortex layer 6ipsiCgL61
Frontal association cortexipsiFrA0
Frontal association cortex dorsal partipsiFrAd2
Frontal cortex area 1ipsiFr12
Frontal cortex area 2ipsiFr22
Frontal cortex area 3ipsiFr32
Frontal cortex medial aspectipsiFrAma2
Agranular insular cortex posterior partipsiAIP-0.5
Granular insular cortexipsiGI2
Prefrontal cortexipsiPFC2
Somatomotoric regionsipsiSMR-0.5
Lateral prefrontal cortexipsilPFC-1
Lateral agranular prefrontal cortexipsiAGl3
Anterior part of primary motor cortexipsiAGlA3
Lateral agranular prefrontal cortex layer 5ipsiAGlL53
Lateral agranular prefrontal cortex layer 5aipsiAGlL5a3
Lateral agranular prefrontal cortex layer 6ipsiAGlL63
Posterior part of the lateral agranular prefrontal cortexipsiAGlP2.5
Rostral part of lateral agranular prefrontal cortex layer 5ipsiAGlrL52
Whiskers motor cortexipsiWMCx-0.5
Medial prefrontal cortexipsimPFC3
Medial agranular prefrontal cortexipsiAGm3
Medial agranular prefrontal cortex rostral partipsirAGm2
Medial agranular prefrontal cortex rostral part layer 5ipsirAGmL52
Primary somatosensory cortex layer 5ipsiS1L53
Primary somatosensory cortex layer 6ipsiS1L61
Primary somatosensory cortex layer 3ipsiS1L31
Primary somatosensory cortex forelimb region anterior partipsiS1FLA2
Primary somatosensory cortex rostral partipsiS1r3
Central dysgranular zone between E4 whisker and forelimb barrel field layers 5ipsiS1BFcdysL53
Central dysgranular zone between E4 whisker and forelimb barrel field layers 6ipsiS1BFcdysL63
Posterior dygranular zone between whisker and trunk representation layer 5ipsiS1pdyL53
Posterior dygranular zone between whisker and trunk representation layer 6ipsiS1pdyL63
Somatosensory cortex layer 5bipsiSRL5b1
Somatomotoric regions layer 3ipsiSMRL31
Somatomotoric regions layer 6ipsiSMRL61
Dorsolateral orbital cortexipsiDLO2
Lateral orbital cortexipsiLO2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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