University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Lung left


Abbreviation
OrgsLung
Color       
Superior regionsLung

SynonymsAbbr.Language
LungOrgsLung 
Pulmonar Eng

SubregionsSide
Apical lobe of the lungleft
Lower lung lobeleft
Lung parenchymleft
Middle lung lobeleft
Parietal pleuraleft
Upper lung lobeLleft
Principal bronchusleft
Pleural cavityleft
Costal pleuraleft
Pulmonary neuroepithelial bodiesleft
Visceral pleuraleft
Triangular ligementsleft

Output to

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG-10
Locus coeruleusipsiLC-10
Koelliker Fuse nucleusipsiKF-10
Lateral parabrachial nucleusipsiLPB-10
Parabrachial nucleus medialipsiPBnMe-10
Paratrigeminal nucleusipsiPa5-10
Spinal trigeminal nucleusipsiSp5nc-10
Spinal trigeminal tractipsisp5-10
Nucleus of the solitary tractipsiSol-0.5
Nucleus of the solitary tract caudal partipsiSolca-0.5
Nucleus of the solitary tract dorsomedial partipsiSolDM-0.5
Lateral hypothalamic areaipsiLH-10
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP-10
Paraventricular hypothalamic nucleus ventral part [Periventricular zone anterior region]ipsiPaV-10
Parafascicular thalamic nucleusipsiPF-10
Posterior thalamic nuclear groupipsiPo-10
Mediodorsal thalamic nucleusipsiMD-10
Submedius thalamic nucleusipsiSub-10
Ventrolateral thalamic nucleusipsiVL-10
Ventral posterior thalamic nucleus parvicellular partipsiVPPC-10
Ventral posterolateral thalamic nucleusipsiVPL-10
Ventral posteromedial thalamic nucleusipsiVPM-10
Ventromedial thalamic nucleusipsiVM-10
Reticular thalamic nucleusipsiRt-10
Zona incertaipsiZI-10
Medial lemniscusipsiml-10
Central amygdaloid nucleusipsiCe-10
Globus pallidusipsiGP-10
Caudate putamenipsiCPu-10
Cingulate cortexipsiCg-10
Agranular insular cortexipsiAI-10
Agranular insular cortex rostral partipsiRAIC-10
Dysgranular insular cortexipsiDI-10
Granular insular cortexipsiGI-10
Lateral agranular prefrontal cortexipsiAGl-10
Medial agranular prefrontal cortexipsiAGm-10
Primary somatosensory cortexipsiS1-10
Secondary somatosensory cortexipsiS2-10
Spinal cord layers C3ipsiSCLC30
Dorsal root ganglion C4ipsiDRGC4-0.5
Spinal cord layers C4ipsiSCLC40
Dorsal root ganglion C5ipsiDRGC5-0.5
Spinal cord layers C5ipsiSCLC50
Dorsal root ganglion C6ipsiDRGC6-0.5
Dorsal root ganglion C7ipsiDRGC7-0.5
Dorsal root ganglion C8ipsiDRGC8-0.5
Dorsal root ganglion T1ipsiDRGT1-0.5
Dorsal root ganglion T2ipsiDRGT2-0.5
Dorsal root ganglion T3ipsiDRGT3-0.5
Dorsal root ganglion T4ipsiDRGT4-0.5
Nucleus of the solitary tractcontraSol1
Jugular ganglionipsiAutoJG-2
Nodose ganglionipsiAutoNoG-0.5
Vagus nerveipsiAutoV-0.5

Input from

NameSideAbbr.WeightDetails
Ventrolateral periaqueductal grayipsiVLPAG-10
Ventral lateral pontine grayipsiVLPG-10
Lateral tegmental areaipsiLTGA-0.5
A5 noradrenaline cellsipsiA5-10
Barringtons nucleusipsiBar-10
Locus coeruleusipsiLC-10
Parapyramidal nucleusipsiPPy-10
Lateral parapyramidal nucleusipsiPPyL-10
Koelliker Fuse nucleusipsiKF-10
Gigantocellular reticular nucleusipsiGi-10
Medullary reticular nucleusipsiMdD-10
Subcoeruleus nucleusipsiSubC-10
Ambiguus nucleusipsiAmb3
Ambiguus nucleus compact partipsiAmbC-0.5
Nucleus of the solitary tractipsiSol-10
Nucleus of the solitary tract commissural partipsiSolC-10
Nucleus of the solitary tract rostral partipsiSolro-0.5
Medial part of rostral portion of the nucleus of the solitary tractipsiSolroM-10
Nucleus of the solitary tract ventrolateral partipsiSolVL-10
Dorsal motor nucleus of vagusipsi100.5
Dorsal motor nucleus of vagus rostral partipsi10R-0.5
Vagal pulmonary neuronsipsi10Spn-0.5
Raphe magnus nucleusipsiRMg-10
Raphe obscurus nucleusipsiROb-10
Raphe pallidus nucleusipsiRPa-10
Cuneate nucleusipsiCu-10
Gracile nucleus principal partipsiGr-10
Lateral paragigantocellular nucleusipsiLPGi-10
Retroambiguus nucleusipsiRAmb-0.5
Retrotrapezoid nucleusipsiRTN-10
Ventromedial medulla oblongataipsiMeObvm-10
Lateral hypothalamic areaipsiLH-10
Paraventricular hypothalamic nucleusipsiPa-10
Paraventricular hypothalamic nucleus dorsal parvocellular divisionipsiPavPoD-10
Central amygdaloid nucleusipsiCe-10
Medial amygdaloid nucleusipsiMe-10
Piriform cortexipsiPir-10
Lateral tegmental areacontraLTGA-0.5
Ambiguus nucleuscontraAmb1
Ambiguus nucleus compact partcontraAmbC-0.5
Dorsal motor nucleus of vaguscontra100.5
Cuneate nucleuscontraCu-10
Gracile nucleus principal partcontraGr-10
Retroambiguus nucleuscontraRAmb-0.5
Nodose ganglionipsiAutoNoG-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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