University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Spinal cord layers C4 left


Abbreviation
SCLC4
Color       
Superior regionsCervical segment 4

SynonymsAbbr.Language
Spinal cord layers C4SCLC4Eng

SubregionsSide
Area X C4left
Dorsal horn C4left
Ventral horn C4left

Output to

NameSideAbbr.WeightDetails
MesencephalonipsiMEC0
Central grayipsiCG2
Superior colliculusipsiSC2
Mesencephalic reticular formationipsiMRF2
Gigantocellular reticular nucleusipsiGi0
Lateral reticular nucleusipsiLRt0
Parvicellular reticular nucleusipsiPCRt1
Ventral part of spinal trigeminal nucleus oral partipsiSp5OV-0.5
Vasodepressor part of caudal midline medulla oblongataipsiCMeObmVd2
Nucleus ZipsiZ1
Medial septal nucleusipsiMS1
Substantia innominataipsiSI1
Lateral hypothalamic areaipsiLH1
Rostral part of suprachiasmatic nucleus ventrolateral partipsiSCnVLR1
ThalamusipsiT0
Dorsal thalamusipsiDOR1
Anterior group of the dorsal thalamusipsiATN2
Central medial thalamic nucleusipsiCM0
Centrolateral thalamic nucleusipsiCL2
Parafascicular thalamic nucleusipsiPF1
Parafascicular thalamic nucleus medial partipsiPFM2
Posterior thalamic nuclear groupipsiPo2
Posterior thalamic nuclear group dorsocaudal partipsiPoDC1.5
Submedius thalamic nucleusipsiSub2
Ventrobasal complexipsiVB2
Ventral posterolateral thalamic nucleus posterior partipsiVPLP1.5
Medial part of ventral posteromedial thalamic nucleusipsiVPMm1.5
Ventrobasal complex lateral part caudal partipsiVBLC2
Ventrobasal complex lateral part ventral partipsiVBLV2
Ventrobasal complex medial partipsiVBM2
Lateral posterior thalamic nucleusipsiLP2
Mediolateral thalamic nucleusipsiMeLT2
Reticular thalamic nucleus lateral partipsiRtL1.5
Zona incertaipsiZI2
Amygdaloid complexipsiAC1
Globus pallidusipsiGP1
Ventral pallidumipsiVP1
Caudate putamenipsiCPu1
Dorsal striatumipsiCPud1
Ventral striatumipsiCPuv1
Medial geniculate nucleus caudal partipsiMGc2
Medial geniculate nucleus dorsal partipsiMGD0
Medial geniculate nucleus medial partipsiMGM0
Medial geniculate nucleus ventral partipsiMGV0
Mesencephalic reticular formationcontraMRF1
Parvicellular reticular nucleuscontraPCRt1
Ventral part of spinal trigeminal nucleus oral partcontraSp5OV-0.5
Medial septal nucleuscontraMS1
Substantia innominatacontraSI1
Lateral hypothalamic areacontraLH1
Dorsal thalamuscontraDOR2
Anterior group of the dorsal thalamuscontraATN2.5
Central medial thalamic nucleuscontraCM0
Centrolateral thalamic nucleuscontraCL2
Parafascicular thalamic nucleuscontraPF2
Submedius thalamic nucleuscontraSub2
Ventrobasal complexcontraVB1
Ventrobasal complex lateral part caudal partcontraVBLC2
Mediolateral thalamic nucleuscontraMeLT2.5
Amygdaloid complexcontraAC1
Globus palliduscontraGP1
Ventral pallidumcontraVP1
Caudate putamencontraCPu1
Dorsal striatumcontraCPud1
Ventral striatumcontraCPuv1
Bulbocavernosus muscleipsiMuscBCV-10
Ischiocavernosus muscleipsiMuscicav-10

Input from

NameSideAbbr.WeightDetails
Red nucleusipsiR1
Superior colliculus deep layersipsiSCd1
Peduncularpontine nucleusipsiPPN-0.5
Substantia nigra A9ipsiSN0
Retrorubral nucleusipsiRR1
Sublaterodorsal tegmental nucleusipsiSLD-0.5
Pedunculopontine tegmental nucleus pars compactaipsiPPNC1
Pedunculopontine tegmental nucleus pars dissipataipsiPPNd3
Interstitial nucleus of CajalipsiInC-0.5
Locus coeruleusipsiLC-0.5
Intermediate reticular nucleusipsiIRt-1
Intermediate reticular nucleus ventrolateral partipsiIRtvL-1
Magnocellular reticular nucleus alpha partipsiNRMCa2
Magnocellular reticular nucleus beta partipsiNRMCb2
Magnocellular reticular nucleus caudal partipsiNRMCC4
Magnocellular reticular nucleus rostral partipsiNRMCR3
Medial reticular formationipsiRFm-1
Ventral reticular formationipsiVRF-0.5
Nucleus reticular ventralis pars betaipsiRVb2
Nucleus reticularis ventralis pars alphaipsiRVa2
Mesencephalic reticular formationipsiMRF1
Pontine reticular nucleus oral partipsiPnO3
Pontine reticular nucleus caudal partipsiPNC3
Peribrachial regionipsiPBR2
Cuneiforme nucleusipsiCnF-0.5
Koelliker Fuse nucleusipsiKF1
Parabrachial nucleus lateral crescentipsiPBlc1
Medial parabrachial nucleus external partipsiMPBE1
Medial parabrachial nucleus medial divisionipsiMPBM1
Parabrachial nucleus ventral partipsiPBV1
Gigantocellular reticular nucleusipsiGi2
Gigantocellular reticular nucleus alpha partipsiGiA2
Gigantocellular reticular nucleus caudal partipsiGiCa1
Gigantocellular reticular nucleus dorsal partipsiGidp1
Gigantocellular reticular nucleus rostral partipsiGiRo3
Gigantocellular reticular nucleus ventral partipsiGiV3
Lateral reticular nucleusipsiLRt2
Lateral reticular nucleus medial perimeteripsiLRtmp-0.5
Subnucleus reticularis dorsalis dorsal partipsiSRDD2
Medial subnucleus reticularis ventralisipsiMSRV2.5
Medullary reticular nucleus ventral partipsiMdV-0.5
Subcoeruleus nucleusipsiSubC-0.5
Hypoglossal nucleusipsi12S-0.5
Spinal trigeminal nucleus caudal partipsiSp5C2
Spinal vestibular nucleusipsiSpVe-1
Vestibular nucleiipsiVnc1.5
Medial vestibular nucleus caudal partipsiMVeP2
Lateral vestibular nucleusipsiLVe3
Inferior vestibular nucleusipsiIVN2
Raphe magnus nucleusipsiRMg3
Raphe magnus nucleus rostral partipsiRMgR3
Raphe obscurus nucleusipsiROb2
Raphe obscurus nucleus rostral partipsiRObr2
Raphe pallidus nucleusipsiRPa2
Raphe pallidus nucleus rostral partipsiRParo2
Dorsal column nucleiipsiDCN1
Cuneate nucleus caudal partipsiCuC1
Cuneate nucleus rostral partipsiCuRo0.5
Middle part of cuneate nucleusipsiCuM0.5
GracileipsiGra0.5
Nucleus of BischoffipsiNBi1.5
Nucleus interfascicularis hypoglossiipsiNIFH2
Paragigantocellular reticular nucleusipsiPGi2
Lateral paragigantocellular nucleusipsiLPGi2
Hypothalamic zonesipsiHYPOz2
Lateral hypothalamic areaipsiLH-0.5
Lateral hypothalamic area ventrolateral partipsiLHvL3
Ventromedial hypothalamic nucleus ventral partipsiVMHV1
Arcuate nucleusipsiArc2
Paraventricular hypothalamic nucleusipsiPa2
Anterolateral regionipsiMMna2
A11 dopamine cellsipsiA112
Retrochiasmatic areaipsiRCh1
Subparafascicular thalamic nucleusipsiSPF2
Subparafascicular thalamic nucleus dorsal partipsiSPFd2
Subparafascicular thalamic nucleus medial partipsiSPFme2
Subparafascicular thalamic nucleus peripheral partipsiSPFpe1
Subparafascicular thalamic nucleus rostral partipsiSPFr2.5
Subparafascicular thalamic nucleus ventral partipsiSPFv2
Zona incertaipsiZI-0.5
Zona incerta caudal partipsiZIC1
Zona incerta magnocellular partipsiZIMag2
Basal gangliaipsiBG0
PallidumipsiPAL0
Caudate putamenipsiCPu0
Subthalamic nucleus caudal partipsiSThc0.5
Subthalamic nucleus rostral partipsiSThr1
Agranular insular cortexipsiAI1
Primary somatosensory cortexipsiS12
Secondary somatosensory cortexipsiS20
Red nucleuscontraR3
Red nucleus dorsomedial partcontraRdm3
Red nucleus rostral partcontraRnRo3
Red nucleus ventrolateral partcontraRveL-0.5
Substantia nigra A9contraSN0
Ventrolateral tegmental areacontraVLTg-0.5
Magnocellular reticular nucleus caudal partcontraNRMCC0.5
Pontine reticular nucleus caudal partcontraPNC1
Koelliker Fuse nucleuscontraKF2
Parabrachial nucleus lateral crescentcontraPBlc2
Medial parabrachial nucleus external partcontraMPBE2
Medial parabrachial nucleus medial divisioncontraMPBM2
Gigantocellular reticular nucleuscontraGi2
Gigantocellular reticular nucleus alpha partcontraGiA2
Gigantocellular reticular nucleus caudal partcontraGiCa0.5
Gigantocellular reticular nucleus rostral partcontraGiRo1.5
Gigantocellular reticular nucleus ventral partcontraGiV1
Lateral reticular nucleuscontraLRt-0.5
Lateral reticular nucleus medial perimetercontraLRtmp-0.5
Medial subnucleus reticularis ventraliscontraMSRV2
Medullary reticular nucleus ventral partcontraMdV-0.5
Medial vestibular nucleus caudal partcontraMVeP2
Inferior vestibular nucleuscontraIVN2
Dorsal raphe nucleus rostral partcontraDRr1
Raphe magnus nucleuscontraRMg1.5
Raphe magnus nucleus rostral partcontraRMgR1.5
Raphe obscurus nucleuscontraROb1.5
Raphe pallidus nucleuscontraRPa1.5
Dorsal column nucleicontraDCN1
Cuneate nucleus rostral partcontraCuRo-0.5
Nucleus interfascicularis hypoglossicontraNIFH0.5
Paragigantocellular reticular nucleuscontraPGi3
Hypothalamic zonescontraHYPOz1
Ventromedial hypothalamic nucleus ventral partcontraVMHV0.5
Arcuate nucleuscontraArc1.5
Retrochiasmatic areacontraRCh0.5
Basal gangliacontraBG0
PallidumcontraPAL0
Caudate putamencontraCPu0
Subthalamic nucleus caudal partcontraSThc1
Subthalamic nucleus rostral partcontraSThr2
Cerebral cortexcontraCEC2
Cerebral cortex layer 5contraCCL51
Motoric regionscontraM0.5
Primary somatosensory cortexcontraS12
LungipsiOrgsLung0

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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