University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



B9 serotonin cells left


Abbreviation
B9
Color       
Superior regionsSerotonin cell group

SynonymsAbbr.Language
B9 group of serotoninergic cells  
B9 area Eng
B9 serotonin cellsB9Eng
Supralemniscal nucleusSuLEng
Supralemniscal nucleusSuLEng

SubregionsSide
Nonserotoninergic population of B9left
B9 serotonin cells anteromedial partleft
B9 serotonin cells caudal partleft
B9 serotonin cells medial regionleft

Output to

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG3
Inferior colliculusipsiICOL3
Laterodorsal tegmental nucleusipsiLDTg3
Barringtons nucleusipsiBar1
Locus coeruleusipsiLC1
Reticular systemipsiRF0
Gigantocellular reticular nucleus alpha partipsiGiA0.5
Boetzinger complexipsiBo2
Mesencephalic trigeminal nucleus medial partipsiperiMe51
Motor trigeminal nucleusipsiMo50
Dorsal raphe nucleusipsiDR0
Median raphe nucleusipsiMnR3
Raphe magnus nucleusipsiRMg3
Raphe magnus nucleus caudal partipsiRMgc0.5
Raphe magnus nucleus rostral partipsiRMgR0.5
Raphe pallidus nucleusipsiRPa0.5
Medial septal nucleusipsiMS1
Medial preoptic nucleusipsiMPO3
Medial preoptic nucleus lateral partipsiMPOL3
Mediobasal hypothalamusipsiMeHypo-0.5
Paraventricular hypothalamic nucleusipsiPa1
Nucleus properipsiSOnP-0.5
Reticular thalamic nucleusipsiRt-0.5
Reticular thalamic nucleus dorsal partipsiRtD1
Reticular thalamic nucleus ventral partipsiRtV2
Medial forebrain bundleipsimfb-2
HippocampusipsiHIPP-1
Piriform cortexipsiPir1
Anterior piriform cortexipsiAPIRC1.5
Posterior piriform cortexipsiPPIRC1
Frontoparietal cortex at the border between lateral agranular prefrontal cortex and primary somatosensory cortexipsiFPCbAGl-0.5
Primary visual cortexipsiV11.5
Interpeduncular nucleus rostral subnucleus central partipsiIPRce1
Mediobasal hypothalamuscontraMeHypo-0.5
Paraventricular hypothalamic nucleuscontraPa-0.5
Anterior piriform cortexcontraAPIRC1.5
Posterior piriform cortexcontraPPIRC1
Frontoparietal cortex at the border between lateral agranular prefrontal cortex and primary somatosensory cortexcontraFPCbAGl-0.5
Primary visual cortexcontraV11.5

Input from

NameSideAbbr.WeightDetails
Rostral part of the ventrolateral preoptic nucleusipsiVLPOr1
Midcaudal part of the ventrolateral preoptic nucleusipsiVLPOmc1
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area perifornical partipsiPFx3
Anterior hypothalamic areaipsiAHA1
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM3
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM3
Caudal piriform cortex layer 3ipsiPirCL30.5
Lateral agranular prefrontal cortexipsiAGl1
Medial agranular prefrontal cortexipsiAGm1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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