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Rat connectome



Dorsomedial hypothalamic nucleus dorsomedial part left


Abbreviation
DMDM
Color       
Superior regionsDorsomedial hypothalamic nucleus dorsal part

SynonymsAbbr.Language
Dorsomedial hypothalamic nucleus dorsomedial partDMDMEng
Nucleus dorsomedialis dorsomedialis Lat
Nucleus parvocellularis dorsomedialis  
Nucleus parvocellularis hypothalamicus dorsomedialis  

Output to

NameSideAbbr.WeightDetails
Central grayipsiCG3
Nucleus of DarkschewitschipsiDk2
Oculomotor nucleusipsi33
Parabigeminal nucleusipsiPBG0
Periaqueductal grayipsiPAG2
Red nucleusipsiR1
Inferior colliculusipsiICOL1
Central nucleus of the inferior colliculusipsiCIC2
External cortex of the inferior colliculusipsiECIC3
Dorsal cortex of the inferior colliculusipsiDCIC2
Nucleus of the brachium of the inferior colliculusipsiBIC1
Superior colliculusipsiSC2
Anterior tegmental nucleusipsiATg1
Peduncularpontine nucleusipsiPPN3
Dorsal peduncular pontine nucleusipsiDPPn1
Ventral peduncular pontine nucleusipsiVPPn3
Substantia nigra A9ipsiSN1
Substantia nigra compact partipsiSNC3
Substantia nigra lateral partipsiSNL3
Substantia nigra reticular partipsiSNR1
Ventral tegmental area A10ipsiVTA1
Interfascicular nucleusipsiIF2
Parabrachial pigmented nucleusipsiPBP2
Paranigral nucleusipsiPN2
Peripeduncular nucleusipsiPP2
Laterodorsal tegmental nucleusipsiLDTg3
Ventral tegmental nucleusipsiVTg1
Dorsal tegmental nucleusipsiDTg3
Dorsal tegmental nucleus central partipsiDTgC2
Pedunculopontine tegmental nucleusipsiPPTg2
Interstitial nucleus of CajalipsiInC1
CerebellumipsiCERE0
Cerebellar cortexipsiCERC0
Deep cerebellar nucleiipsiDNC1
FlocculusipsiFl2
Barringtons nucleusipsiBar3
Intermediate interstitial nucleus of the medial longitudinal fasciculusipsiII0
Locus coeruleusipsiLC3
Pontine grayipsiPG1
Reticulotegmental nucleusipsiRETn1
Pontine nucleiipsiPn0
Prepositus nucleusipsiPr3
Intermediate reticular nucleusipsiIRt2
Paramedian reticular nucleusipsiPMn2
Mesencephalic reticular formationipsiMRF2
Deep mesencephalic nucleusipsiDpMe1
Pontine reticular nucleusipsiPRN1
Pontine reticular nucleus oral partipsiPnO1
Cuneiforme nucleusipsiCnF1
Parabrachial nucleusipsiPB3
Koelliker Fuse nucleusipsiKF3
Lateral parabrachial nucleusipsiLPB3
Parabrachial nucleus medialipsiPBnMe3
Gigantocellular reticular nucleusipsiGi2
Gigantocellular reticular nucleus alpha partipsiGiA3
Gigantocellular reticular nucleus ventral partipsiGiV4
Lateral reticular nucleusipsiLRt2
Medullary reticular nucleusipsiMdD1
Medullary reticular nucleus dorsal partipsiMdDd4
Medullary reticular nucleus ventral partipsiMdV2
Parvicellular reticular nucleusipsiPCRt1
Trapezoid bodyipsitz1
Nucleus of the trapezoid bodyipsiTz1
Ambiguus nucleusipsiAmb1
Area postremaipsiAP3
Abducens nucleusipsi61
Facial nucleusipsi72
Hypoglossal nucleusipsi12S1
Mesencephalic trigeminal nucleusipsiMe52
Motor trigeminal nucleusipsiMo52
Principal sensory trigeminal nucleusipsiPr52
Spinal trigeminal nucleusipsiSp5nc3
Spinal trigeminal nucleus caudal partipsiSp5C1
Spinal trigeminal nucleus oral partipsiSp5O2
Gelatinous layer of the caudal spinal trigeminal nucleusipsiGe53
Trochlear nucleusipsi41
Cochlear systemipsiCOS1
Dorsal cochlear nucleusipsiDC4
Ventral cochlear nucleusipsiVC2
Vestibular nucleiipsiVnc1
Nucleus of the solitary tractipsiSol3
Dorsal motor nucleus of vagusipsi103
Raphe nucleiipsiRAN2
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus interfascicular partipsiDRI3
Linear nucleus of the rapheipsiLIR2
Rostral linear nucleus of the rapheipsiRLi1
Median raphe nucleusipsiMnR4
Pontine raphe nucleusipsiPnR1
Raphe magnus nucleusipsiRMg1
Raphe obscurus nucleusipsiROb2
Raphe pallidus nucleusipsiRPa1
B9 serotonin cellsipsiB93
Caudal ventrolateral medullaipsiCVLM2
Rostral ventrolateral medullaipsiRVLM3
GracileipsiGra1
Nucleus of RolleripsiRo1
Olivary nucleusipsiON1
Dorsal paragigantocellular nucleusipsiDPGi2
Lateral paragigantocellular nucleusipsiLPGi3
Median eminenceipsiME3
Endopiriform systemipsiEnN2
Dorsal endopiriform nucleusipsiDEn2
Islands of CallejaipsiICj1
Nucleus of the horizontal limb of the diagonal bandipsiHDB2
Nucleus of the vertical limb of the diagonal bandipsiVDB3
Medial septal nucleusipsiMS2
Substantia innominataipsiSI2
Lateral preoptic areaipsiLPO3
Medial preoptic areaipsiMPA3
Lateral preoptic nucleusipsiLPN3
Magnocellular preoptic nucleusipsiMCPO3
Medial preoptic nucleusipsiMPO3
Median preoptic nucleusipsiMnPO2
Posterodorsal preoptic nucleusipsiPDP2
Tenia tectaipsiTT2
Tuberomammillary nucleusipsiTuM4
Ventral tuberomammillary nucleusipsiVTM2
Subcommissural organipsiSCO1
Lateral hypothalamic areaipsiLH3
Tuberal region of lateral hypothalamusipsiTuLH2
Lateroanterior hypothalamic nucleusipsiLAH3
Posterolateral hypothalamusipsiPLHY3
Supraoptic nucleus [Lateral zone]ipsiSOLZ2
Anterior hypothalamic areaipsiAHA1
Anterior hypothalamic area anterior partipsiAHAA2
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe2
Anterior hypothalamic nucleusipsiAHn3
Dorsal hypothalamic areaipsiDA1
Dorsomedial hypothalamic nucleus dorsal partipsiDMD3
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM2
Parastriatal nucleusipsiPS2
Posterior hypothalamic areaipsiPHA3
Ventromedial hypothalamic nucleusipsiVMH3
Ventromedial hypothalamic nucleus anterior partipsiVMHA2
Ventromedial hypothalamic nucleus posterior partipsiVMHP4
Arcuate nucleusipsiArc3
Arcuate nucleus caudal halfipsiArcch2.5
Nucleus paraventricularis [Periventricular zone anterior region]ipsiPaPAR2
Paraventricular hypothalamic nucleus descending divisionipsiPVHd3
Paraventricular hypothalamic nucleus magnocellular part [Periventricular zone anterior region]ipsiPaAM1
Paraventricular hypothalamic nucleus parvicellular part [Periventricular zone anterior region]ipsiPaPc-0.5
Paraventricular hypothalamic nucleusipsiPa2
Paraventricular nucleus medial parvocellular partipsiPaMep2
Periventricular hypothalamic nucleusipsiPe3
Posterior periventricular nucleusipsiPeP2
Preoptic periventricular nucleusipsiPePO2
Suprachiasmatic nucleusipsiSCh2
Mammillary bodyipsiCMAM0
Lateral mammillary nucleusipsiLM4
Medial mammillary nucleus lateral partipsiML0
Medial mammillary nucleus medial partipsiMM0
Medial mammillary nucleus median partipsiMMnm1
Submammillothalamic nucleusipsiSMT4
Supramammillar nucleusipsiSuM1
Perifornical nucleusipsiPeF2
Retrochiasmatic areaipsiRCh2
Subincertal nucleusipsiSubI4
Anterodorsal thalamic nucleusipsiAD1
Anteromedial thalamic nucleusipsiAM2
Anteroventral thalamic nucleusipsiAV1
Interoanterodorsal thalamic nucleusipsiIAD0
Interoanteromedial thalamic nucleusipsiIAM1
Central medial thalamic nucleusipsiCM3
Centrolateral thalamic nucleusipsiCL3
Gelatinosus thalamic nucleusipsiG1
Paracentral thalamic nucleusipsiPC2
Parafascicular thalamic nucleusipsiPF1
Rhomboid thalamic nucleusipsiRh3
Posterior thalamic nuclear groupipsiPo2
Medial group of the dorsal thalamusipsiMED4
Intermediodorsal thalamic nucleusipsiIMD4
Mediodorsal thalamic nucleus central partipsiMDC1
Mediodorsal thalamic nucleus lateral partipsiMDL1
Mediodorsal thalamic nucleus medial partipsiMDM1
Submedius thalamic nucleusipsiSub0
Paratenial thalamic nucleusipsiPT0
Paraventricular thalamic nucleusipsiPV4
Reuniens thalamic nucleusipsiRe3
Subfornical organipsiSFO2
Ventrolateral thalamic nucleusipsiVL1
Ventral posterolateral thalamic nucleusipsiVPL0
Ventral posteromedial thalamic nucleusipsiVPM0
Ventromedial thalamic nucleusipsiVM0
Intralaminar nucleiipsiILN3
Lateral posterior thalamic nucleusipsiLP0
Laterodorsal thalamic nucleusipsiLD1
Reticular thalamic nucleusipsiRt0
Subparafascicular thalamic nucleusipsiSPF4
Zona incertaipsiZI3
Nucleus of the fields of ForelipsiF1
Zona incerta dorsal partipsiZID4
Zona incerta ventral partipsiZIV2
Tuber cinereum areaipsiTC4
Lateral habenular nucleusipsiLHb1
Medial habenular nucleusipsiMHb0
Anterior pretectal nucleusipsiAPT1
Medial pretectal nucleusipsiMPT1
Posterior pretectal nucleusipsiPPT1
Pineal glandipsiPi0
Anterior lobe of pituitaryipsiAPit1
Intermediate lobe of pituitaryipsiIPit2
Posterior lobe of pituitaryipsiPPit0
Lateral lemniscusipsill3
Medial forebrain bundle medial partipsimfbm-2
Stria medullaris of the thalamusipsism2
Basolateral amygdaloid nucleusipsiBL1
Anterior basolateral nucleusipsiBLA2
Posterior basolateral nucleusipsiBLP2
Ventral basolateral nucleusipsiBLV2
Basomedial amygdaloid nucleusipsiBM1
Anterior basomedial nucleusipsiBMA2
Posterior basomedial nucleusipsiBMP2
Lateral amygdaloid nucleusipsiLA1
Bed nucleus of the stria terminalisipsiBST2
Bed nucleus of the stria terminalis anterior lateral areaipsiBSTAL2
Bed nucleus of the stria terminalis intraamygdaloid divisionipsiBSTIA3
Bed nucleus of the stria terminalis lateral divisionipsiBSTL3
Bed nucleus of the stria terminalis lateral division dorsal partipsiBSTLD2
Bed nucleus of the stria terminalis lateral division intermediate partipsiBSTLI2
Bed nucleus of the stria terminalis lateral division juxtacapsular partipsiBSTLJ1
Bed nucleus of the stria terminalis lateral division posterior partipsiBSTLP3
Bed nucleus of the stria terminalis lateral division ventral partipsiBSTLV1
Bed nucleus of the stria terminalis medial divisionipsiBSTM3
Bed nucleus of the stria terminalis medial division anterior partipsiBSTMA3
Bed nucleus of the stria terminalis medial division posterointermediate partipsiBSTMPI2
Bed nucleus of the stria terminalis medial division posterolateral partipsiBSTMPL2
Bed nucleus of the stria terminalis medial division posteromedial partipsiBSTMPM3
Bed nucleus of the stria terminalis medial division ventral partipsiBSTMV3
Bed nucleus of the stria terminalis posterior divisionipsiBSTP2
Bed nucleus of the stria terminalis posterior division ventral nucleusipsiBSTV3
Central amygdaloid nucleusipsiCe3
Central amygdaloid nucleus lateral divisionipsiCeL3
Central amygdaloid nucleus lateral division capsular partipsiCeC3
Central amygdaloid nucleus medial divisionipsiCeM3
Anterior amygdaloid areaipsiAA2
Anterior amygdaloid area dorsal partipsiAAD3
Anterior amygdaloid area shell areaipsiAASh3
Anterior amygdaloid area ventral partipsiAAV3
Cortical amygdaloid nucleusipsiCAn2
Anterior cortical amygdaloid nucleusipsiACo2
Posterolateral cortical nucleusipsiPLCo2
Nucleus of the lateral olfactory tractipsiLOT2
Medial amygdaloid nucleusipsiMe2
Medial amygdaloid nucleus anterodorsal partipsiMeAD3
Medial amygdaloid nucleus posterodorsal partipsiMePD3
Medial amygdaloid nucleus posteroventral partipsiMePV3
Amygdalohippocampal areaipsiAHi2
Posteromedial cortical nucleusipsiPMCo2
Amygdalostriatal transition areaipsiAStr2
Intercalated nuclei of the amygdalaipsiI1
ClaustrumipsiCl3
Globus pallidusipsiGP1
Lateral globus pallidusipsiLGP1
Medial globus pallidusipsiMGP3
Ventral pallidumipsiVP1
Accumbens nucleusipsiAc1
Accumbens nucleus coreipsiAcbC1
Accumbens nucleus shellipsiAcbSh2
Caudate putamenipsiCPu1
Fundus of the striatumipsiFS2
Subthalamic nucleusipsiSTh1
Parasubthalamic nucleusipsiPSTh0
Bed nucleus of the anterior commissureipsiBAC3
HippocampusipsiHIPP1
Dentate gyrusipsiDG0
Field CA1 of hippocampusipsiCA11
Field CA2 of hippocampusipsiCA21
Field CA3 of hippocampusipsiCA31
SubiculumipsiS1
Septohippocampal nucleusipsiSHi1
Indusium griseumipsiIG3
Entorhinal cortexipsiEnt1
Piriform cortexipsiPir2
Cerebral cortex layer 4ipsiCCL41
Cerebral cortex layer 1ipsiCCL12
Cerebral cortex layer 2ipsiCCL21
Cerebral cortex layer 3ipsiCCL31
Cerebral cortex layer 5ipsiCCL51
Cerebral cortex layer 6ipsiCCL62
Cerebral cortex layer 6bipsiCCL6b3
Cingulate cortexipsiCg1
Frontal association cortexipsiFrA1
Parietal association cortexipsiPtA1
Agranular insular cortexipsiAI1
Granular insular cortexipsiGI2
Perirhinal cortexipsiA351
Lateral agranular prefrontal cortexipsiAGl1
Primary somatosensory cortexipsiS11
Visual regionsipsiVR1
Orbital cortexipsiOrC1
Nucleus of the posterior commissureipsiPCom1
Geniculate bodyipsiGB0
Dorsal geniculate nucleus lateral partipsiDLGl2
Lateral geniculate complexipsiLG1
Intergeniculate leafipsiIGL2
Ventral lateral geniculate nucleusipsiVLG2
Medial geniculate nucleusipsiMG0
Interpeduncular nucleusipsiIP2
Interpeduncular nucleus apical subnucleusipsiIPA3
Interpeduncular nucleus central subnucleusipsiIPRc1
Interpeduncular nucleus dorsomedial subnucleusipsiIPDM3
Interpeduncular nucleus intermediate subnucleusipsiIPI1
Interpeduncular nucleus lateral subnucleusipsiIPL3
Interpeduncular nucleus rostral subnucleusipsiIPR1
Olfactory bulb A16ipsiMOB2
Olfactory nucleiipsiONn1
Anterior olfactory nucleusipsiAON2
Olfactory tubercleipsiTuO1
Lateral septal nucleusipsiLS3
Lateral septal nucleus dorsal partipsiLSD3
Lateral septal nucleus intermediate partipsiLSI2
Lateral septal nucleus ventral partipsiLSV3
Septofimbrial nucleusipsiSFi1
Triangular septal nucleusipsiTS1
Septohypothalamic nucleusipsiSHy2
Choroid plexus 3d ventricleipsicpv31
Choroid plexus 4th ventricleipsicpv41
Ependyma and subependymal layeripsiE2
Paraventricular hypothalamic nucleus parvicellular part [Periventricular zone anterior region]contraPaPc1
Paraventricular hypothalamic nucleuscontraPa1

Input from

NameSideAbbr.WeightDetails
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area perifornical partipsiPFx2
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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