University of Rostock

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Rat connectome



Raphe magnus nucleus rostral part left


Abbreviation
RMgR
Color       
Superior regionsRaphe magnus nucleus

SynonymsAbbr.Language
Raphe magnus nucleus rostral partRMgREng

SubregionsSide
Raphe magnus nucleus rostral extentleft
Rostral pole of the midline nucleus raphe magnusleft

Output to

NameSideAbbr.WeightDetails
Central grayipsiCG-0.5
Superior colliculusipsiSC-0.5
CerebellumipsiCERE-0.5
Dorsal raphe nucleusipsiDR-0.5
Superior central raphe nucleusipsiCS-0.5
Pontine raphe nucleusipsiPnR-0.5
Basal forebrainipsiBAF3
Nucleus of the horizontal limb of the diagonal bandipsiHDB2
Nucleus of the vertical limb of the diagonal bandipsiVDB2
Medial septal nucleusipsiMS2
Substantia innominataipsiSI3
Medial tuberal nucleusipsiMTuN1
Preoptic regionipsiPREO-0.5
Lateral preoptic areaipsiLPO3
Medial preoptic areaipsiMPA3
Magnocellular preoptic nucleusipsiMCPO2
Median preoptic nucleusipsiMnPO3
HypothalamusipsiHYPO3
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area perifornical partipsiPFx3
Lateral hypothalamic area [Lateral zone mammillary level]ipsiLHLZM3
Area lateralis hypothalamicus posterior [Regio hypothalamus caudalis]ipsiDMrhc1
Dorsal hypothalamic areaipsiDA3
Posterior hypothalamic areaipsiPHA2
Ventromedial hypothalamic nucleusipsiVMH1
Paraventricular hypothalamic nucleus dorsal cap [Periventricular zone anterior region]ipsiPaDC3
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo3
Anterior hypothalamic area [Regio rostralis]ipsiAHARR1
Medial hypothalamic groupipsiMHYPOg-0.5
Retrochiasmatic areaipsiRCh1
Intralaminar nuclei of the dorsal thalamusipsiILM1
Parafascicular thalamic nucleusipsiPF-0.5
Paraventricular thalamic nucleusipsiPV1
Lateral habenular nucleusipsiLHb1
Internal capsuleipsiic-0.5
Medial forebrain bundleipsimfb-2
Medial lemniscusipsiml-0.5
Bed nucleus of the stria terminalisipsiBST3
Bed nucleus of the stria terminalis anterior dorsal areaipsiBSTAD1
Bed nucleus of the stria terminalis anterior lateral areaipsiBSTAL1
Bed nucleus of the stria terminalis lateral divisionipsiBSTL3
Bed nucleus of the stria terminalis medial divisionipsiBSTM3
Bed nucleus of the stria terminalis medial division anterior partipsiBSTMA3
Bed nucleus of the stria terminalis ventral partipsiBNSTv3
Central amygdaloid nucleusipsiCe3
Ventral pallidumipsiVP3
Septal regionipsiSER-0.5
Lateral septal nucleusipsiLS2
Spinal cordipsiMES-2
Intermediolateral cell column pars principalisipsiIMLp3
Dorsal horn C1ipsiDHC1-2
Spinal cord layers C4ipsiSCLC43
Spinal cord layer 9 T2ipsiSCL9T23
Spinal cord layer 9 T3ipsiSCL9T33
Spinal cord layers L6ipsiSCLL62.5
Spinal cord layers S4ipsiSCLS40.5
Basal forebraincontraBAF3
Nucleus of the horizontal limb of the diagonal bandcontraHDB2
Medial septal nucleuscontraMS2
Substantia innominatacontraSI3
HypothalamuscontraHYPO3
Lateral hypothalamic area [Lateral zone mammillary level]contraLHLZM3
Area lateralis hypothalamicus posterior [Regio hypothalamus caudalis]contraDMrhc1
Ventromedial hypothalamic nucleuscontraVMH1
Paraventricular hypothalamic nucleus dorsal cap [Periventricular zone anterior region]contraPaDC3
Paraventricular hypothalamic nucleus parvocellular divisioncontraPavPo3
Bed nucleus of the stria terminalis lateral divisioncontraBSTL3
Bed nucleus of the stria terminalis medial divisioncontraBSTM3
Bed nucleus of the stria terminalis medial division anterior partcontraBSTMA3
Bed nucleus of the stria terminalis ventral partcontraBNSTv3
Central amygdaloid nucleuscontraCe3
Ventral pallidumcontraVP3
Lateral septal nucleuscontraLS2
Intermediolateral cell column pars principaliscontraIMLp1
Spinal cord layers C4contraSCLC41.5
Spinal cord layer 9 T2contraSCL9T21.5
Spinal cord layer 9 T3contraSCL9T31.5
Spinal cord layers L6contraSCLL61
Spinal cord layers S4contraSCLS40

Input from

NameSideAbbr.WeightDetails
Dorsolateral periaqueductal grayipsiDLPAG3
Dorsolateral periaqueductal gray rostral partipsiPAGdlr1
Periaqueductal gray dorsal partipsiPAGd2
Ventrolateral periaqueductal grayipsiVLPAG3
Ventrolateral periaqueductal gray rostral partipsiPAGvlr1
Ventromedial periaqueductal grayipsiVMPAG1
Retrorubral nucleusipsiRR1
Laterodorsal tegmental nucleusipsiLDTg0.5
Pedunculopontine tegmental nucleusipsiPPTg0.5
Mesencephalic reticular formationipsiMRF1
Deep mesencephalic nucleusipsiDpMe3
Pontine reticular nucleus oral partipsiPnO1
Pontine reticular nucleus caudal part ventral partipsiPNCcv1.5
Parabrachial nucleusipsiPB1
Koelliker Fuse nucleusipsiKF1
Gigantocellular reticular nucleusipsiGi1
Parvicellular reticular nucleusipsiPCRt0.5
Subcoeruleus nucleusipsiSubC1
B9 serotonin cellsipsiB90.5
Caudal ventrolateral medullaipsiCVLM0.5
Lateral paragigantocellular nucleusipsiLPGi1
Diagonal band of BrocaipsiDBB0.5
Substantia innominataipsiSI0.5
Lateral preoptic areaipsiLPO1
Medial preoptic areaipsiMPA1
Medial preoptic nucleusipsiMPO0.5
Median preoptic nucleusipsiMnPO1
Lateral hypothalamic areaipsiLH1
Dorsal hypothalamic areaipsiDA1.5
Nucleus paraventricularis [Periventricular zone anterior region]ipsiPaPAR0.5
Nucleus of the fields of ForelipsiF1
Zona incerta ventral part medial partipsiZIvm1
Lateral habenular nucleusipsiLHb1
Anterior pretectal nucleusipsiAPT0.5
Bed nucleus of the stria terminalis medial divisionipsiBSTM1
Central amygdaloid nucleusipsiCe0.5
Accumbens nucleusipsiAc0.5
Insular cortexipsiICX1.5
Perirhinal cortexipsiA351.5
Prefrontal cortexipsiPFC2
Dorsolateral periaqueductal gray rostral partcontraPAGdlr0.5
Ventrolateral periaqueductal gray rostral partcontraPAGvlr0.5
Mesencephalic reticular formationcontraMRF0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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