University of Rostock

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Rat connectome



Raphe magnus nucleus caudal part left


Abbreviation
RMgc
Color       
Superior regionsRaphe magnus nucleus

SynonymsAbbr.Language
Caudal part of raphe magnus nucleus Eng
Caudal part of nucleus raphe magnus Eng
Raphe magnus nucleus caudal partRMgcEng

SubregionsSide
Rostral part of the raphe magnus nucleus caudal partleft

Output to

NameSideAbbr.WeightDetails
Ventral medullary tegmentumipsiVMTGA3
Posterior lobe of the cerebellumipsiCERCPL-0.5
Rostroventrolateral reticular nucleusipsiRVL1
Pontine reticular nucleusipsiPRN-0.5
Gigantocellular reticular nucleus alpha partipsiGiA2
Gigantocellular reticular nucleus dorsal partipsiGidp2
Gigantocellular reticular nucleus ventral partipsiGiV2
Lateral reticular nucleusipsiLRt1
C1 adrenaline cellsipsiC13
C2 adrenaline cellsipsiC21
C3 adrenaline cellsipsiC31
Spinal trigeminal nucleusipsiSp5nc1
Spinal trigeminal nucleus ventral partipsiSp5ncV1
Nucleus of the solitary tractipsiSol-0.5
Nucleus of the solitary tract commissural partipsiSolC-0.5
Raphe obscurus nucleus caudal partipsiRObc1
Raphe obscurus nucleus ventral partipsiRObV2
Raphe pallidus nucleusipsiRPa1
Ventral lateral medulla oblongataipsiMVL1
A1 noradrenergic cellsipsiA1-2
A2 noradrenergic cellsipsiA2-0.5
Paragigantocellular reticular nucleusipsiPGi-0.5
Lateral paragigantocellular nucleus retrofacial partipsiLPGirf2
Basal forebrainipsiBAF0
Lateral preoptic areaipsiLPO1
Medial preoptic areaipsiMPA1
HypothalamusipsiHYPO1
Lateral hypothalamic areaipsiLH1
Dorsal hypothalamic areaipsiDA1
Bed nucleus of the stria terminalisipsiBST1
Spinal cordipsiMES-0.5
Cervical segment 1ipsiCS1-0.5
Cervical segment 2ipsiCS2-0.5
Intermediolateral cell column T1ipsiIMLT1-0.5
Intermediolateral cell column T2ipsiIMLT2-0.5
Intermediolateral cell column T3ipsiIMLT3-0.5
Intermediolateral cell column T4ipsiIMLT4-0.5
Intermediolateral cell column T5ipsiIMLT5-0.5
Intermediolateral cell column T6ipsiIMLT6-0.5
Intermediolateral cell column T7ipsiIMLT7-0.5
Intermediolateral cell column T8ipsiIMLT8-0.5
Intermediolateral cell column T9ipsiIMLT9-0.5
Intermediolateral cell column T10ipsiIMLT10-0.5
Intermediolateral cell column T11ipsiIMLT11-0.5
Intermediolateral cell column T12ipsiIMLT12-0.5
Intermediolateral cell column T13ipsiIMLT13-0.5

Input from

NameSideAbbr.WeightDetails
Dorsolateral periaqueductal grayipsiDLPAG3
Periaqueductal gray dorsal partipsiPAGd1
Ventrolateral periaqueductal grayipsiVLPAG3
Ventromedial periaqueductal grayipsiVMPAG1
Retrorubral nucleusipsiRR1
Laterodorsal tegmental nucleusipsiLDTg1
Pedunculopontine tegmental nucleusipsiPPTg0.5
Deep mesencephalic nucleusipsiDpMe3
Pontine reticular nucleus oral partipsiPnO1
Pontine reticular nucleus caudal part ventral partipsiPNCcv1
Parabrachial nucleusipsiPB1
Koelliker Fuse nucleusipsiKF1
Gigantocellular reticular nucleusipsiGi1
Parvicellular reticular nucleusipsiPCRt0.5
Subcoeruleus nucleusipsiSubC1
Raphe obscurus nucleusipsiROb2
B9 serotonin cellsipsiB90.5
Caudal ventrolateral medullaipsiCVLM0.5
Lateral paragigantocellular nucleusipsiLPGi0.5
Diagonal band of BrocaipsiDBB0.5
Substantia innominataipsiSI0.5
Lateral preoptic areaipsiLPO1
Medial preoptic areaipsiMPA1
Medial preoptic nucleusipsiMPO0.5
Median preoptic nucleusipsiMnPO0.5
Lateral hypothalamic areaipsiLH1
Dorsal hypothalamic areaipsiDA2
Nucleus paraventricularis [Periventricular zone anterior region]ipsiPaPAR0.5
Nucleus of the fields of ForelipsiF1.5
Zona incerta ventral part medial partipsiZIvm1.5
Lateral habenular nucleusipsiLHb1
Anterior pretectal nucleusipsiAPT1
Bed nucleus of the stria terminalis medial divisionipsiBSTM1
Central amygdaloid nucleusipsiCe0.5
Accumbens nucleusipsiAc0.5
Insular cortexipsiICX0.5
Perirhinal cortexipsiA350.5
Prefrontal cortexipsiPFC1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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