University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Rostral part of claustrum left


Abbreviation
RCl
Color       
Superior regionsClaustrum

SynonymsAbbr.Language
Rostral claustrum  
Rostral part of claustrumRClEng

SubregionsSide
Dorsal part of the rostral part of claustrumleft
Superficial rostral claustrumleft
Rostral pole of claustrumleft

Output to

NameSideAbbr.WeightDetails
Substantia nigra reticular partipsiSNR1
Posterior thalamic nuclear groupipsiPo1
Anterior pretectal nucleusipsiAPT1
Dorsal striatumipsiCPud-0.5
PresubiculumipsiPrS3
Frontal association cortexipsiFrA2
Parietal association cortexipsiPtA0
Prefrontal cortexipsiPFC3
Lateral agranular prefrontal cortexipsiAGl3
Primary somatosensory cortexipsiS12
Primary somatosensory cortex barrel field layer 6ipsiS1BF62
Visual regionsipsiVR0
Primary visual cortexipsiV11
Posterior thalamic nuclear groupcontraPo0
Anterior pretectal nucleuscontraAPT0
Frontal association cortexcontraFrA0
Parietal association cortexcontraPtA0
Prefrontal cortexcontraPFC1
Lateral agranular prefrontal cortexcontraAGl3
Primary somatosensory cortexcontraS12
Visual regionscontraVR0
Primary visual cortexcontraV11

Input from

NameSideAbbr.WeightDetails
Substantia nigra A9ipsiSN2
Substantia nigra compact part medial tieripsiSNCM1.5
Ventral tegmental area A10ipsiVTA2
Ventral tegmental area A10 dorsal partipsiVTAd0.5
Interfascicular nucleusipsiIF0
Ventral tegmental area A10 ventral partipsiVTAv2
Ventral tegmental area A10 ventrolateral partipsiVTAvl2
Retrorubral nucleusipsiRR1
Locus coeruleusipsiLC1
Dorsal raphe nucleusipsiDR2
Rostral linear nucleus of the rapheipsiRLi0.5
Central raphe nucleus lateral partipsiCRNL1
Lateral hypothalamic area rostrocaudal extendipsiLHrce1
Supramammillar nucleusipsiSuM-0.5
Supramammillar nucleus lateral partipsiSuML0.5
Anterior group of the dorsal thalamusipsiATN0
Intralaminar nuclei of the dorsal thalamusipsiILM2
Central medial thalamic nucleusipsiCM2
Centrolateral thalamic nucleusipsiCL2
Paracentral thalamic nucleusipsiPC2.5
Parafascicular thalamic nucleus ventrolateral partipsiPFvl1
Posterior thalamic nuclear group caudal partipsiPoca3
Posterior thalamic nuclear group rostral partipsiPoro1.5
Suprageniculate thalamic nucleusipsiSG2
Mediodorsal thalamic nucleus lateral partipsiMDL1.5
Midline group of the dorsal thalamusipsiMTN1
Reuniens thalamic nucleusipsiRe1.5
Ventrolateral thalamic nucleusipsiVL1
Ventral posterior thalamic complex caudomedial partipsiVPTcm1
Ventromedial thalamic nucleusipsiVM1
Lateral posterior thalamic nucleusipsiLP2
Laterodorsal thalamic nucleusipsiLD0
Reticular thalamic nucleusipsiRt0
Zona incerta rostrocaudal partipsiZIrc1
HabenulaipsiHAB0
Anterior pretectal nucleusipsiAPT2
Basal nucleus magnocellular partipsiBmc2
Basal magnocellular nucleus rostral poleipsiBmcR1
Subthalamic nucleusipsiSTh0
Cingulate cortexipsiCg1
Cingulate cortex area 3 layer 5ipsiCg3L51.5
Prelimbic cortex dorsal part layer 5ipsiPrLdL5-0.5
Medial prefrontal cortexipsimPFC1
Primary visual cortexipsiV1-1
Secondary visual cortex lateral areaipsiV2L-1
Dopaminergic nuclear complexcontraDoNC0
HypothalamuscontraHYPO0
ThalamuscontraT0
Subthalamic nucleuscontraSTh0
Cingulate cortex area 3 layer 5contraCg3L51.5
Prelimbic cortex dorsal part layer 5contraPrLdL5-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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