University of Rostock

Department of Anatomy

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Rat connectome



Rostral linear nucleus of the raphe left


Abbreviation
RLi
Color       
Superior regionsLinear nucleus of the raphe

SynonymsAbbr.Language
 RL 
Rostral linear raphe nucleus  
Nucleus linearis rostralis  
Rostral linear nucleus raphe Eng
Rostral linear nucleus of the rapheRLiREng
Rostral linear nucleus of the rapheRLiEng
Rostral linear nucleus  
Nucleus linealis rostralis Eng
Rostral linear subnucleus Eng

Output to

NameSideAbbr.WeightDetails
Central gray pons partipsiCGP1
Nucleus of DarkschewitschipsiDk0
Oculomotor nucleusipsi30
Periaqueductal grayipsiPAG1
Dorsolateral periaqueductal grayipsiDLPAG1
Red nucleusipsiR0
Substantia nigra A9ipsiSN-0.5
Substantia nigra compact partipsiSNC1
Substantia nigra reticular partipsiSNR1
Ventral tegmental area A10ipsiVTA0.5
Interfascicular nucleusipsiIF1
Ventral tegmental area anterior part intermediate levelipsiVTAAi-0.5
Parabrachial pigmented nucleusipsiPBP-3
Caudal linear nucleus of the rapheipsiCLi0
Retrorubral nucleusipsiRR1
Laterodorsal tegmental nucleusipsiLDTg1
Ventral tegmental nucleusipsiVTg-0.5
Edinger Westphal nucleusipsiEW2
Intermediate reticular nucleusipsiIRt1
Medial reticular formationipsiRFm1
Rostroventrolateral reticular nucleusipsiRVL1
Mesencephalic reticular formationipsiMRF1
Laterodorsal portions of the midbrain reticular formationipsiMRFLd3
Parabrachial nucleusipsiPB1
Ambiguus nucleusipsiAmb1
Dorsal raphe nucleusipsiDR1
Median raphe nucleusipsiMnR1
Superior central raphe nucleusipsiCS-0.5
Raphe magnus nucleusipsiRMg-0.5
Raphe obscurus nucleusipsiROb1
Inferior oliveipsiIO2
Inferior olive principal nucleusipsiIOPr2
Basal forebrainipsiBAF1.5
Diagonal band of BrocaipsiDBB2
Nucleus of the vertical limb of the diagonal bandipsiVDB2
Medial septal nucleusipsiMS2
Medial preoptic areaipsiMPA0.5
Magnocellular preoptic nucleusipsiMCPO3
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0.5
Tuberal division of the lateral hypothalamic areaipsiLHTC1
Posterior hypothalamic areaipsiPHA1
Ventromedial hypothalamic nucleus anterior partipsiVMHA2
Paraventricular hypothalamic nucleusipsiPa1
A8 dopamine cells retrorubral groupipsiRRF1
Supraoculomotor capipsiSu3C2
Anteroventral thalamic nucleusipsiAV0
Central medial thalamic nucleusipsiCM1
Centrolateral thalamic nucleusipsiCL2
Paracentral thalamic nucleus caudal partipsiPC-c1
Paracentral thalamic nucleus rostral partipsiPC-r0
Parafascicular thalamic nucleusipsiPF-0.5
Parafascicular thalamic nucleus lateral partipsiPFL2
Parafascicular thalamic nucleus medial partipsiPFM2
Rhomboid thalamic nucleusipsiRh1
Mediodorsal thalamic nucleusipsiMD3
Intermediodorsal thalamic nucleusipsiIMD1
Submedius thalamic nucleusipsiSub0
Paratenial thalamic nucleusipsiPT0
Paraventricular thalamic nucleusipsiPV-0.5
Paraventricular thalamic nucleus anterior partipsiPVA0
Paraventricular thalamic nucleus medial partipsiPVM0
Paraventricular thalamic nucleus posterior partipsiPVP1
Reuniens thalamic nucleusipsiRe0
Ventral posterior thalamic nucleus parvicellular partipsiVPPC0
Ventromedial thalamic nucleus caudal partipsiVMc0
Oval paracentral thalamic nucleusipsiOPC1
Lateral habenular nucleusipsiLHb2
Lateral habenular nucleus lateral partipsiLHbL3
Lateral habenular nucleus medial partipsiLHbM1
Medial forebrain bundleipsimfb-2
Amygdaloid complexipsiAC1
Ventral basolateral nucleusipsiBLV1
Lateral amygdaloid nucleusipsiLA3
Bed nucleus of the stria terminalisipsiBST1
Bed nucleus of the stria terminalis medial division posterointermediate partipsiBSTMPI-0.5
Central amygdaloid nucleusipsiCe1
Central amygdaloid nucleus medial divisionipsiCeM-0.5
Interstitial nucleus of the posterior limb of the anterior commissureipsiIPAC1
Interstitial nucleus of the posterior limb of the anterior commissure medial partipsiIPACM2
Sublenticular extended amygdalaipsiSLEA2
Medial division of the sublenticular extended amygdalaipsiSLEAm-1
Anterior amygdaloid area dorsal partipsiAAD1
Medial amygdaloid nucleusipsiMe3
Rostral part of claustrumipsiRCl0.5
Globus pallidusipsiGP1
Ventral pallidumipsiVP3
Ventral pallidum ventrolateral partipsiVPvl2
Ventral pallidum ventromedial partipsiVPvm2
Accumbens nucleusipsiAc2
Accumbens nucleus coreipsiAcbC2
Accumbens nucleus shellipsiAcbSh2
Lateral accumbens shellipsiAcbShl1
Medial accumbens shellipsiAcbShm3
Lateral nucleus accumbensipsiAcl1
Medial accumbensipsiAcbM2
Caudate putamenipsiCPu-0.5
Dorsal striatumipsiCPud0
Lateral striatumipsiCPul3
Lateral stripe of the striatumipsiLSS1
Dentate gyrusipsiDG1
Field CA1 of hippocampusipsiCA12
Field CA3 of hippocampusipsiCA32
Septohippocampal nucleusipsiSHi1
Entorhinal cortexipsiEnt1
Piriform cortexipsiPir1
Anterior cingulate cortexipsiACC1
Cingulate cortex area 1 caudal partipsiCg1c1
Cingulate cortex area 2 caudal partipsiCg2c1
Prelimbic cortexipsiPrL1
Infralimbic cortexipsiIL1
Frontal cortex area 2ipsiFr21
Temporal cortexipsiTE1
Agranular insular cortexipsiAI1
Agranular insular cortex dorsal part superficial layersipsiAIDsL1
Perirhinal cortexipsiA351
Prefrontal cortexipsiPFC1
Lateral agranular prefrontal cortexipsiAGl0.5
Medial prefrontal cortexipsimPFC-0.5
Medial agranular prefrontal cortexipsiAGm0
Orbital cortexipsiOrC1
Lateral orbital cortexipsiLO-0.5
Olfactory tubercleipsiTuO3
Olfactory tubercle lateral partipsiTuOL1
Olfactory tubercle densocellular layeripsiTuOd3
Olfactory tubercle polymorph layeripsiTuOpo3
Olfactory tubercle medial partipsiTuOMP2
Lateral septal nucleusipsiLS-0.5
Median raphe nucleuscontraMnR1
Raphe magnus nucleuscontraRMg-0.5
Raphe obscurus nucleuscontraROb1
Basal forebraincontraBAF1
Dentate gyruscontraDG1
Field CA1 of hippocampuscontraCA11
Field CA3 of hippocampuscontraCA31
Prelimbic cortexcontraPrL0.5

Input from

NameSideAbbr.WeightDetails
Ventral tegmental area A10ipsiVTA1
Ventral tegmental area caudodorsomedial partipsiVTACDM1
Dorsal tegmental nucleusipsiDTg2
Dorsal tegmental nucleus lateral partipsiDLTN2
Edinger Westphal nucleusipsiEW1
Central cerbellar nucleiipsiCERcn0
Interposed cerebellar nucleiipsiICN1
Lateral cerebellar nucleusipsiCERL2
Medial cerebellar nucleusipsiMed0
A5 noradrenaline cellsipsiA51
A7 noradrenaline cellsipsiA70.5
Locus coeruleusipsiLC1
Nucleus incertus pars dissipataipsiNId1
Medial reticular formationipsiRFm-0.5
C1 adrenaline cellsipsiC10.5
C2 adrenaline cellsipsiC20.5
C3 adrenaline cellsipsiC30.5
Dorsal raphe nucleusipsiDR-0.5
A1 noradrenergic cellsipsiA11
A2 noradrenergic cellsipsiA22
Substantia innominataipsiSI2
Preoptic regionipsiPREO2
Lateral preoptic areaipsiLPO2
Medial preoptic areaipsiMPA2
Medial preoptic area dorsolateral partipsiMPADL2
Medial preoptic nucleusipsiMPO-0.5
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0.5
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral hypothalamic areaipsiLH1
Lateral hypothalamic area juxtadorsomedial regionipsiJDM1
Lateral hypothalamic area perifornical partipsiPFx3
Tuberal nucleusipsiTU2
Anterior hypothalamic areaipsiAHA3
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM3
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM1
Posterior hypothalamic areaipsiPHA2
Tuberal areaipsiTA1
Ventromedial hypothalamic nucleusipsiVMH3
Ventromedial hypothalamic nucleus anterior partipsiVMHA1
Ventromedial hypothalamic nucleus central partipsiVMHC1
Ventromedial hypothalamic nucleus dorsomedial partipsiVMHDM1
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL1
Arcuate nucleusipsiArc0
Paraventricular hypothalamic nucleusipsiPa1
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag1
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo1
Incerto hypothalamic areaipsiicHYPO1
Mammillary bodyipsiCMAM1
Premammillary nucleus dorsal partipsiPMD1
Supramammillar nucleusipsiSuM1
Anterior group of the dorsal thalamusipsiATN-0.5
Parafascicular thalamic nucleusipsiPF-0.5
Lateral habenular nucleusipsiLHb-0.5
Lateral habenular nucleus lateral partipsiLHbL3
Lateral habenular nucleus medial partipsiLHbM1
Lateral habenular nucleus oval subnucleusipsiLHbos3
Midbrain periventricular fiber systemipsilftmpe1
Amygdaloid complexipsiAC-0.5
Extended amygdalaipsiEXA-0.5
Bed nucleus of the stria terminalisipsiBST-0.5
Bed nucleus of the stria terminalis anterior division dorsomedial nucleusipsiBSTdm1
Bed nucleus of the stria terminalis principal nucleusipsiBSTpr1
Bed nucleus of the stria terminalis ventral tipipsiBNSTvt2
Central division of sublenticular extended amygdalaipsiSLEAc-0.5
Medial amygdaloid nucleus anterodorsal partipsiMeAD1
Medial amygdaloid nucleus posteroventral partipsiMePV1
Accumbens nucleusipsiAc-0.5
Parasubthalamic nucleusipsiPSTh2
Prefrontal cortexipsiPFC-0.5
Precommissural nucleusipsiPrC1
Dorsal tegmental nucleuscontraDTg1
Dorsal tegmental nucleus lateral partcontraDLTN1
A5 noradrenaline cellscontraA51
A7 noradrenaline cellscontraA70.5
Locus coeruleuscontraLC0.5
Nucleus incertus pars dissipatacontraNId0.5
C1 adrenaline cellscontraC10.5
C2 adrenaline cellscontraC20.5
C3 adrenaline cellscontraC30.5
Spinal trigeminal nucleus caudal part rostrocaudal extentcontraSp5Crce-2
A1 noradrenergic cellscontraA11
A2 noradrenergic cellscontraA22
Tuberal nucleuscontraTU1
Ventromedial hypothalamic nucleus anterior partcontraVMHA0.5
Ventromedial hypothalamic nucleus central partcontraVMHC0.5
Ventromedial hypothalamic nucleus dorsomedial partcontraVMHDM1
Ventromedial hypothalamic nucleus ventrolateral partcontraVMHVL0.5
Premammillary nucleus dorsal partcontraPMD0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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