University of Rostock

Department of Anatomy

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Rat connectome



Intralaminar nuclei of the dorsal thalamus left


Abbreviation
ILM
Color       
Superior regionsDorsal thalamus

SynonymsAbbr.Language
Intralaminar nuclei of the thalamusILMEng
Intralaminar nuclei of the dorsal thalamusILMEng
Intralaminar thalamic nucleiITNEng

SubregionsSide
Central medial thalamic nucleusleft
Centre median nucleusleft
Centrolateral thalamic nucleusleft
Gelatinosus thalamic nucleusleft
Paracentral thalamic nucleusleft
Parafascicular thalamic nucleusleft
Retroparafascicular nucleusleft
Rhomboid thalamic nucleusleft
Central part of the intralaminar nucleus of the thalamusleft

Output to

NameSideAbbr.WeightDetails
Substantia innominataipsiSI3
Ventral anterior-lateral complex of the thalamusipsiVAL1
Reticular thalamic nucleusipsiRt2
Rostral part of claustrumipsiRCl2
Globus pallidusipsiGP1
Caudate putamenipsiCPu2
Medial striatumipsiCPum2
Caudal striatumipsiCPuc1
Dorsal striatumipsiCPud-0.5
Dorsolateral striatumipsiCPudl3
Mediodorsal striatumipsiCPuMD-0.5
Mediolateral striatumipsiCPuml-0.5
Rostral striatumipsiCPur-0.5
Rostrocaudal region of the caudate putamenipsiRCCPu-0.5
Ventral striatumipsiCPuv-0.5
Ventrolateral striatumipsiCPuvl2
Cerebral cortexipsiCEC2
Dorsal hippocampusipsiHIPPd-0.5
Retrosplenial granular cortex rostral partipsiRSGr1
Frontal association cortexipsiFrA3
Infragranular layers of the auditory cortexipsiAULi3
Supragranular layers of the auditory cortexipsiAULs1.5
Agranular insular cortexipsiAI1.5
Prefrontal cortexipsiPFC3
Prefrontal cortex layer 1ipsiPFCL12
Prefrontal cortex layer 2ipsiPFCL21
Prefrontal cortex layer 3ipsiPFCL31
Prefrontal cortex layer 4ipsiPFCL41
Prefrontal cortex layer 5ipsiPFCL52
Prefrontal cortex layer 6ipsiPFCL62
Lateral agranular prefrontal cortexipsiAGl2
Primary somatosensory cortexipsiS12
Secondary visual cortex medial area layer 1ipsiV2ML10
Secondary visual cortex lateral area layer 1ipsiV2LL10
Infragranular layers of the auditory cortexcontraAULi3
Supragranular layers of the auditory cortexcontraAULs1.5

Input from

NameSideAbbr.WeightDetails
Central gray pons part medial partipsiCGPm1.5
Dorsolateral periaqueductal grayipsiDLPAG1
Ventral periaqueductal grayipsiVPAG2
Superior colliculusipsiSC3
Mesopontine tegmental areaipsiTGAm2
Caudal linear nucleus of the rapheipsiCLi-0.5
Dorsal tegmental nucleusipsiDTg3
Pedunculopontine tegmental nucleus pars compactaipsiPPNC1.5
Edinger Westphal nucleusipsiEW3
Parabrachial nucleusipsiPB1.5
Koelliker Fuse nucleusipsiKF1
Lateral parabrachial nucleusipsiLPB2
Lateral parabrachial nucleus external partipsiLPBE1
Lateral parabrachial nucleus internal partipsiLPBI2
Parabrachial nucleus central lateral partipsiPBCeL1
Parabrachial nucleus medialipsiPBnMe2
Parabrachial nucleus ventrolateral partipsiPBveLa2
Dorsal raphe nucleusipsiDR2.5
Dorsal raphe nucleus dorsomedial subdivisionipsiDRdm2.5
Raphe magnus nucleus rostral partipsiRMgR1
Diagonal band of BrocaipsiDBB1
Medial preoptic areaipsiMPA1
Ventrolateral preoptic nucleusipsiVLPO1
Dorsolateral preoptic regionipsiPREOdL1
Anterior hypothalamic areaipsiAHA1
Supraoptic nucleus [Supraoptic region]ipsiSO1
Medial mammillary nucleus median partipsiMMnm3
Medial mammillary nucleus posterior partipsiMMNp-1
Spinal cord layer 5 C1ipsiSCL5C12
Spinal cord layer 4 C1ipsiSCL4C12
Spinal cord layer 7 C1ipsiSCL7C12
Spinal cord layer 5 C2ipsiSCL5C22
Spinal cord layer 4 C2ipsiSCL4C22
Spinal cord layer 7 C2ipsiSCL7C22
Spinal cord layer 5 C3ipsiSCL5C32
Spinal cord layer 4 C3ipsiSCL4C32
Spinal cord layer 7 C3ipsiSCL7C32
Area X C5ipsiSCL10C52
Spinal cord layer 5 C5ipsiSCL5C52
Spinal cord layer 4 C5ipsiSCL4C52
Spinal cord layer 7 C5ipsiSCL7C52
Area X C6ipsiSCL10C62
Spinal cord layer 5 C6ipsiSCL5C62
Spinal cord layer 4 C6ipsiSCL4C62
Spinal cord layer 7 C6ipsiSCL7C62
Thoracal segments layer 4ipsiTSegL42
Thoracal segments layer 5ipsiTSegL52
Thoracal segments layer 7ipsiTSegL72
Thoracal segments layer 10ipsiTSegL102
Lumbar segments layer 4ipsiLSegL42
Lumbar segments layer 5ipsiLSegL52
Lumbar segments layer 7ipsiLSegL72
Lumbar segments layer 10ipsiLSegL102
Sacral segments layer 4ipsiSSegL42
Sacral segments layer 5ipsiSSegL52
Sacral segments layer 7ipsiSSegL72
Sacral segments layer 10ipsiSSegL102
Central gray pons part medial partcontraCGPm1.5
Superior colliculuscontraSC0.5
Mesopontine tegmental areacontraTGAm1
Dorsal tegmental nucleuscontraDTg3
Pedunculopontine tegmental nucleus pars compactacontraPPNC1
Lateral parabrachial nucleus external partcontraLPBE2
Thoracal segments layer 4contraTSegL43
Thoracal segments layer 5contraTSegL53
Thoracal segments layer 7contraTSegL73
Thoracal segments layer 10contraTSegL103
Lumbar segments layer 4contraLSegL43
Lumbar segments layer 5contraLSegL53
Lumbar segments layer 7contraLSegL73
Lumbar segments layer 10contraLSegL103
Intermediate zone of lumbar segmentscontraLSegiZ-0.5
Sacral segments layer 4contraSSegL43
Sacral segments layer 5contraSSegL53
Sacral segments layer 7contraSSegL73
Sacral segments layer 10contraSSegL103

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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