University of Rostock

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Rat connectome



Subthalamic nucleus medial part left


Abbreviation
SThM
Color       
Superior regionsSubthalamic nucleus

SynonymsAbbr.Language
Subthalamic nucleus medial partSThMEng

SubregionsSide
Subthalamic nucleus medial one-thirdleft
Subthalamic nucleus medial two-thirdsleft
Subthalamic nucleus mediolateral partleft
Subthalamic nucleus middle partleft
Ventral position in the medial part of the subthalamic nucleusleft
Subthalamic nucleus medial capleft

Output to

NameSideAbbr.WeightDetails
Central grayipsiCG2
Central gray lateral partipsiCGL1
Central tegmental fieldipsiTGAC2
Substantia nigra compact partipsiSNC-2
Ventral tegmental area A10ipsiVTA2
Locus coeruleus anterior partipsiLCa1
Locus coeruleus rostral partipsiLCRo3
Parabrachial nucleusipsiPB3
Dorsal raphe nucleusipsiDR2
Superior central raphe nucleusipsiCS2
Basal forebrainipsiBAF3
Medial eminence internal layeripsiMEI2
Diagonal band of BrocaipsiDBB2
Substantia innominataipsiSI2
Substantia innominata caudal aspectipsiSIc1.5
Lateral preoptic areaipsiLPO-2
Magnocellular preoptic nucleusipsiMCPO2
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area anterior partipsiLHAa-2
Lateral hypothalamic area lateral partipsiLHAL-2
Lateral hypothalamic area [Lateral zone mammillary level]ipsiLHLZM0.5
Anterior hypothalamic areaipsiAHA2
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Posterior hypothalamic areaipsiPHA-2
Ventromedial hypothalamic nucleusipsiVMH2
Cell sparse capsuleipsiMAMcsc2
Supramammillar nucleusipsiSuM2
ThalamusipsiT1
Mediodorsal thalamic nucleus medial partipsiMDM1
Paraventricular thalamic nucleusipsiPV1
Perireuniens nucleusipsiPRe1
Ansa peduncularisipsiape-2
Medial internal capsuleipsimic-2
Cerebral peduncle basal partipsicp-2
Medial forebrain bundleipsimfb-2
Amygdaloid complexipsiAC1
Central amygdaloid nucleusipsiCe1
Corpus striatumipsiCSTR0.5
Globus pallidusipsiGP1.5
Lateral globus pallidusipsiLGP4
Lateral globus pallidus ventromedial partipsiLGPvm4
Lateral globus pallidus rostral partipsiLGPR4
Medial globus pallidusipsiMGP1.5
Fundus of the striatum lateral partipsiFSL0
Cerebral cortexipsiCEC-0.5

Input from

NameSideAbbr.WeightDetails
Lateral zoneipsiLHA-0.5
Central medial thalamic nucleus lateral partipsiCMl3
Central medial thalamic nucleus ventrolateral partipsiCMVL1
Central medial thalamic nucleus medial partipsiCMm3
Parafascicular thalamic nucleus lateral partipsiPFL3
Parafascicular thalamic nucleus medial partipsiPFM3
Parafascicular thalamic nucleus ventrolateral partipsiPFvl1
Globus pallidusipsiGP-0.5
Medial globus pallidusipsiMGP1.5
Ventral pallidumipsiVP-0.5
Ventral pallidum dorsolateral partipsiVPdl3
Parasubthalamic nucleusipsiPSTh-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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