University of Rostock

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Rat connectome



Parafascicular thalamic nucleus medial part left


Abbreviation
PFM
Color       
Superior regionsParafascicular thalamic nucleus

SynonymsAbbr.Language
Parafascicular thalamic nucleus medial partPFMEng
Medial parafascicular thalamic nucleusmPFEng
Parafascicular thalamic nucleus medial portion Eng
Medial portion of the nucleus parafascicularis Eng
Parafascicular thalamic nucleus middle part Eng
Medial parafascicular nucleus Eng

Output to

NameSideAbbr.WeightDetails
Substantia innominataipsiSI2
Lateral hypothalamic areaipsiLH2
Terete hypothalamic nucleusipsiTe3
Reuniens thalamic nucleusipsiRe3
Reticular thalamic nucleus rostral partipsiRtr-10
Zona incertaipsiZI0.5
Forel field H2ipsiFFH22
Basolateral amygdaloid nucleusipsiBL-0.5
Lateral amygdaloid nucleusipsiLA-0.5
Bed nucleus of the stria terminalis intraamygdaloid divisionipsiBSTIA2
Central amygdaloid nucleusipsiCe-0.5
Central amygdaloid nucleus ventral partipsiCeV-0.5
Interstitial nucleus of the posterior limb of the anterior commissure medial partipsiIPACM2
Medial amygdaloid nucleusipsiMe-0.5
Amygdalostriatal transition area rostromedial partipsiAStrrm2
Medial globus pallidusipsiMGP2
Ventral pallidumipsiVP2
StriatumipsiSTR-0.5
Accumbens nucleusipsiAc3
Accumbens nucleus coreipsiAcbC2
Lateral coreipsiAcbCl4
Rostral coreipsiAcbCr-0.5
Accumbens nucleus shellipsiAcbSh1
Lateral accumbens shellipsiAcbShl4
Medial accumbens shellipsiAcbShm3
Dorsolateral accumbensipsiAcbDL2
Dorsomedial striatumipsiCPudm1
Medial striatumipsiCPum3
Dorsolateral striatumipsiCPudl0.5
Ventral striatumipsiCPuv3
Ventral striatum medial partipsiCPuvem3
Ventrolateral striatumipsiCPuvl2
Ventromedial striatumipsiCPuvm4
Subthalamic nucleusipsiSTh2
Subthalamic nucleus dorsomedial partipsiSThdm-0.5
Subthalamic nucleus medial partipsiSThM3
Subthalamic nucleus medial two-thirdsipsiSThMtt3
SubiculumipsiS1
ParasubiculumipsiPaS1
Entorhinal cortexipsiEnt1
Anterior cingulate cortexipsiACC2
Prelimbic cortex dorsal partipsiPrLd2
Infralimbic cortexipsiIL1
Insular cortexipsiICX0.5
Agranular insular cortexipsiAI1
Agranular insular cortex dorsal part layer 1aipsiAIDL1a1
Agranular insular cortex ventral part layer 1aipsiAIVL1a1
Granular insular cortex layer 4ipsiGIL44
Granular insular cortex layer 3ipsiGIL3-0.5
Granular insular cortex layer 1aipsiGIL1a4
Perirhinal cortexipsiA351
Lateral agranular prefrontal cortex layer 1aipsiAGlL1a1
Medial prefrontal cortexipsimPFC4
Medial agranular prefrontal cortex anterior partipsiAGmA0.5
Medial agranular prefrontal cortex caudal partipsicAGm2
Somatosensory cortex layer 1aipsiSRL1a1
Visual regionsipsiVR1
Dorsomedial striatumcontraCPudm0
Ventrolateral striatumcontraCPuvl1
Ventromedial striatumcontraCPuvm0.5

Input from

NameSideAbbr.WeightDetails
Paralemniscal nucleusipsiPL1
Nucleus of DarkschewitschipsiDk3
Periaqueductal grayipsiPAG-0.5
Aqueductal part of periaqueductal grayipsiAPAG1
Ventrolateral periaqueductal grayipsiVLPAG2
Superior colliculusipsiSC1
Superior colliculus lateral partipsiSCL2
Superior colliculus medial partipsimSC2
Superior colliculus ventrolateral partipsiSCVL1
Central tegmental fieldipsiTGAC3
Subpeduncular tegmental nucleusipsiSPTg3
Substantia nigra compact partipsiSNC4
Substantia nigra reticular partipsiSNR2
Ventral tegmental area A10ipsiVTA2
Parabrachial pigmented nucleusipsiPBP3
Caudal linear nucleus of the rapheipsiCLi1
Laterodorsal tegmental nucleusipsiLDTg3
Dorsal tegmental nucleusipsiDTg2
Pedunculopontine tegmental nucleusipsiPPTg3
Interstitial nucleus of CajalipsiInC2
A5 noradrenaline cellsipsiA51
Barringtons nucleusipsiBar1
Locus coeruleusipsiLC3
Nucleus incertusipsiNI0
Ventrolateral part of the pontis oralis nucleusipsiPorVL-0.5
Dorsomedial tegmental areaipsiDMTg3
Prepositus nucleusipsiPr1
Intermediate reticular nucleusipsiIRt2
Medial reticular formationipsiRFm1
Deep mesencephalic nucleusipsiDpMe4
Nucleus reticularis subcuneiformisipsiRScf1
Pontine reticular nucleus oral partipsiPnO3
Pontine reticular nucleus ventral partipsiPnV2
Pontine reticular nucleus caudal partipsiPNC3
Cuneiforme nucleusipsiCnF3
Parabrachial nucleusipsiPB2
Gigantocellular reticular nucleusipsiGi3
Gigantocellular reticular nucleus alpha partipsiGiA1
Medullary reticular nucleusipsiMdD2
Subnucleus reticularis dorsalisipsiSRD2
Medullary reticular nucleus ventral partipsiMdV1
Parvicellular reticular nucleusipsiPCRt3
Subcoeruleus nucleusipsiSubC2
Principal sensory trigeminal nucleusipsiPr50
Spinal trigeminal nucleus caudal partipsiSp5C2
Spinal trigeminal nucleus interpolar partipsiSp5I1
Spinal trigeminal nucleus oral partipsiSp5O0
Vestibular nucleiipsiVnc1
Superior vestibular nucleusipsiSuVe1
Medial vestibular nucleus rostral partipsiMVeR1
Lateral vestibular nucleusipsiLVe2
Nucleus of the solitary tractipsiSol2
Dorsal raphe nucleus caudal partipsiDRC1
Dorsal raphe nucleus dorsal partipsiDRD3
Dorsal raphe nucleus ventral partipsiDRV4
Dorsal raphe nucleus ventrolateral partipsiDRVL4
Rostral linear nucleus of the rapheipsiRLi2
Median raphe nucleusipsiMnR2
Paramedian raphe nucleusipsiPMnR2
Raphe interpositus nucleusipsiRIP2
Raphe magnus nucleusipsiRMg1
Raphe obscurus nucleusipsiROb0
Raphe pallidus nucleusipsiRPa2
Rostral ventrolateral medullaipsiRVLM1
Cuneate nucleusipsiCu1
Gracile nucleus principal partipsiGr1
Dorsal paragigantocellular nucleusipsiDPGi2
Lateral paragigantocellular nucleusipsiLPGi1
A8 dopamine cells retrorubral groupipsiRRF3
Zona incertaipsiZI2
Medial globus pallidusipsiMGP-0.5
Subthalamic nucleus dorsolateral partipsiSThDL2
Subthalamic nucleus lateral partipsiSThl1
Subthalamic nucleus middle partipsiSThm2.5
Frontal cortex area 1ipsiFr1-0.5
Parietal cortex area 1ipsiPar1-0.5
Interpeduncular nucleusipsiIP2
Spinal cordipsiMES2
Spinal cord layers C1ipsiSCLC12
Spinal cord layers C2ipsiSCLC22
Spinal cord layers C3ipsiSCLC32
Spinal cord layers C4ipsiSCLC42
Spinal cord layers C5ipsiSCLC52
Spinal cord layers C6ipsiSCLC62
Spinal cord layers C7ipsiSCLC72
Spinal cord layers C8ipsiSCLC82
Superior colliculus lateral partcontraSCL1
Superior colliculus medial partcontramSC1
Ventrolateral part of the pontis oralis nucleuscontraPorVL-0.5
Subthalamic nucleuscontraSTh0

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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