University of Rostock

Department of Anatomy

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Rat connectome



Substantia nigra compact part lateral tier left


Abbreviation
SNCL
Color       
Superior regionsSubstantia nigra compact part

SynonymsAbbr.Language
Substantia nigra compact part lateral tierSNCL 
Lateralmost part of substantia nigra pars compacta  
Substantia nigra pars compacta lateral part  
Lateral portion of the substantia nigra pars compacta Eng

SubregionsSide
Substantia nigra compact part lateral thirdleft

Output to

NameSideAbbr.WeightDetails
Central gray ventral areaipsiCGva1
Paralemniscal nucleusipsiPL0.5
Substantia nigra compact partipsiSNC1
Substantia nigra lateral partipsiSNL1
Ventral tegmental area A10ipsiVTA1
Lateral half of the nucleus tegmenti dorsalis lateralisipsiDLTNLh1
Pedunculopontine tegmental nucleusipsiPPTg0.5
Pedunculopontine tegmental nucleus pars compactaipsiPPNC1
Locus coeruleusipsiLC0
Reticular systemipsiRF2
Pontine reticular nucleus oral partipsiPnO0.5
Pontine reticular nucleus oral part central partipsiPnOC0.5
Cuneiforme nucleus caudal partipsiCnFc0.5
Parvicellular reticular nucleusipsiPCRt1
Dorsal raphe nucleusipsiDR3
Rostral median raphe nucleusipsiMnRRo3
HypothalamusipsiHYPO-0.5
Ventromedial hypothalamic nucleus central partipsiVMHC-0.5
Retrochiasmatic areaipsiRCh-0.5
Lateral two-third of the ventral medial nucleus of the thalamusipsiVMTLtt-0.5
Amygdaloid complexipsiAC-0.5
Basolateral amygdaloid nucleusipsiBL3
Basolateral nucleus medial portionipsiBLmp-0.5
Lateral amygdaloid nucleusipsiLA-0.5
Bed nucleus of the stria terminalis intraamygdaloid divisionipsiBSTIA3
Central amygdaloid nucleusipsiCe3
Caudate putamenipsiCPu3
Medial striatumipsiCPum1
Caudal striatumipsiCPuc1
Central caudal striatumipsiCPucc-0.5
Caudate putamen basal partipsiCPuBa-0.5
Dorsal striatumipsiCPud3
Dorsolateral striatumipsiCPudl2
Posterior caudate putamenipsiCPup4
Rostral striatumipsiCPur3
Rostrodorsal striatumipsiCPurd2
Caudate putamen rostrobasal partipsiCPurb1
Ventrolateral striatumipsiCPuvl2
Lateral striatumipsiCPul3
Dorsolateral subventricular zoneipsiSVZdL-0.5
Lateral prefrontal cortexipsilPFC0.5
Central gray ventral areacontraCGva1
Lateral half of the nucleus tegmenti dorsalis lateraliscontraDLTNLh1
Caudate putamen basolateral partcontraCPuBL0.5
Dorsal striatumcontraCPud1

Input from

NameSideAbbr.WeightDetails
Superior colliculusipsiSC1
Lateral portion of the intermediate white layer of the superior colliculusipsiInWhL2
Lateral hypothalamic areaipsiLH2
Ventromedial hypothalamic nucleusipsiVMH2
Perifornical nucleusipsiPeF2
Bed nucleus of the stria terminalis lateral divisionipsiBSTL2
Bed nucleus of the stria terminalis dorsal nucleusipsiBSTd2
Central amygdaloid nucleusipsiCe3
Capsule like area surrounding central amygdaloid nucleusipsiCec0.5
Central amygdaloid nucleus basolateral partipsiCeBL0
Central amygdaloid nucleus lateral divisionipsiCeL2
Central amygdaloid nucleus medial divisionipsiCeM2
Central amygdaloid nucleus medial division rostrocaudal extentipsiCeMrce3
Medial amygdaloid nucleus dorsal tipipsiMeDT2
Medial striatumipsiCPum2
Parietal association cortexipsiPtA2
Perirhinal cortexipsiA352
Amygdaloid complexcontraAC0
Central amygdaloid nucleuscontraCe2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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