University of Rostock

Department of Anatomy

Neuroscience Group

  Homepage

 Staff

 neuroVIISAS

 Rat connectome

 Other connectomes

 Neuroimaging

 Neurodegeneration

 Neuroproteomics

 Students

 Links

 Publications

Rat connectome



Perifornical nucleus left


Abbreviation
PeF
Color       
Superior regionsDiencephalon

SynonymsAbbr.Language
Nucleus prefornicalisPForLat
Interfornical nucleusPFN 
Perifornical areaPFAEng
Perifornical nucleusPeFEng
Perifornical area Eng

SubregionsSide
Perifornical area juxtacapsular regionleft
Perifornical nucleus caudal partleft
Perifornical nucleus dorsal partleft
Perifornical nucleus lateral partleft
Perifornical nucleus medial partleft
Perifornical nucleus rostral partleft
Perifornical nucleus ventral partleft
Perifornical nucleus anterior partleft
Perifornical nucleus fusiform neuronsleft
Anterior lateral part of the perifornical arealeft
Ventrolateral perifornical arealeft
Perifornical nucleus at the level of the paraventricular hypothalamic nucleus anterior parvicellular partleft
Perifornical nucleus caudal to the paraventricular hypothalamic nucleus anterior parvicellular partleft

Output to

NameSideAbbr.WeightDetails
Central grayipsiCG3
Center of the dorsal central grayipsiCGCD0
Central gray dorsal peripheral partipsiCGDp0
Central gray dorsomedialipsiCGDM0
Central gray lateral dorsal peripheral partipsiCGLDp0
Central gray lateral dorsal central partipsiCGLDc0
Central gray lateral ventral partipsiCGVD1
Central gray lateral ventral peripheral partipsiCGVDp3
Central gray lateral ventral central partipsiCGVDc3
Central gray medial partipsiCGMe1.5
Central gray pons partipsiCGP2
Central gray dorsolateral peripheral partipsiCGDLp0
Central gray dorsolateral central partipsiCGDLc0
Central gray periventricular partipsiCGpv0
Medial paralemniscal nucleusipsiMPL2
Nucleus of DarkschewitschipsiDk1
Oculomotor nucleusipsi32
Periaqueductal grayipsiPAG2
Dorsolateral periaqueductal grayipsiDLPAG2
Lateral periaqueductal grayipsiLPAG2
Periaqueductal gray caudal partipsiPAGc-0.5
Periaqueductal gray rostral partipsiPAGR-0.5
Ventrolateral periaqueductal grayipsiVLPAG2
Deep gray layer of the superior colliculusipsiDpG1
Central tegmental fieldipsiTGAC3
Midbrain extrapyramidal areaipsiMEA1.5
Substantia nigra compact partipsiSNC1
Substantia nigra compact part lateral tieripsiSNCL2
Substantia nigra lateral partipsiSNL1
Substantia nigra reticular partipsiSNR2
Ventral tegmental area A10ipsiVTA3
Ventral tegmental area A10 caudal partipsiVTAcp2
Ventral tegmental area rostral partipsiVTAR2
Peripeduncular nucleusipsiPP2
Ventrolateral tegmental areaipsiVLTg1
Laterodorsal tegmental nucleusipsiLDTg2.5
Dorsal tegmental nucleusipsiDTg1
Pedunculopontine tegmental nucleusipsiPPTg0.5
Edinger Westphal nucleusipsiEW3
A5 noradrenaline cellsipsiA51
Barringtons nucleusipsiBar4
Locus coeruleusipsiLC2
Pericoerulear regionipsiPCR3
Nucleus incertus pars compactaipsiNIc-0.5
Parapyramidal nucleusipsiPPy-0.5
Pontine tegmental fieldipsiPTF2
Pontine nucleiipsiPn1
Dorsal reticular formationipsiDRF-0.5
Intermediate reticular nucleus alpha partipsiIRtA3
Medial reticular formationipsiRFm1
Reticular formation adjacent to the nucleus ambiguusipsiRFaA-0.5
Pontine reticular nucleus oral partipsiPnO-0.5
Cuneiforme nucleusipsiCnF2
Parabrachial nucleusipsiPB1
Lateral parabrachial nucleusipsiLPB2
Lateral parabrachial nucleus central partipsiLPBC-0.5
Parabrachial nucleus medialipsiPBnMe2
Gigantocellular reticular nucleus ventral partipsiGiV-0.5
Parvicellular reticular nucleusipsiPCRt2
Dorsal parvocellular reticular formationipsiDPCRt3
Ambiguus nucleusipsiAmb-0.5
Area postremaipsiAP3
Hypoglossal nucleusipsi12S-0.5
Mesencephalic trigeminal nucleusipsiMe51
Mesencephalic trigeminal nucleus medial partipsiperiMe51.5
Spinal trigeminal nucleus caudal partipsiSp5C2
Spinal trigeminal nucleus dorsal partipsiSp5ncD3
Medial vestibular nucleusipsiMVe2
Nucleus of the solitary tractipsiSol3
Nucleus of the solitary tract caudal partipsiSolca0
Nucleus of the solitary tract commissural partipsiSolC1
Nucleus of the solitary tract lateral partipsiSolL-0.5
Nucleus of the solitary tract medial partipsiSolM-0.5
Nucleus of the solitary tract adjacent to the nucleus nervi vagiipsiSola101
Dorsal motor nucleus of vagusipsi101
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus caudal partipsiDRC2
Dorsal raphe nucleus central partipsiDRcep2
Dorsal raphe nucleus lateral wingipsiDRlw2
Dorsal raphe nucleus rostral partipsiDRr2
Median raphe nucleusipsiMnR3
Raphe magnus nucleusipsiRMg1
Raphe pallidus nucleusipsiRPa-0.5
Raphe pallidus nucleus rostral partipsiRParo-0.5
Ventral lateral medulla oblongataipsiMVL1
Cuneate nucleusipsiCu-0.5
Periolivary area between superior olivary nucleus and descending root of the facial nerveipsiPOAd7fn-0.5
Median eminenceipsiME-0.5
Endopiriform systemipsiEnN-1
Dorsal endopiriform nucleusipsiDEn-0.5
Islands of Calleja major islandipsiICjM-0.5
Diagonal band of BrocaipsiDBB1
Nucleus of the horizontal limb of the diagonal bandipsiHDB-0.5
Nucleus of the vertical limb of the diagonal bandipsiVDB-0.5
Medial septal nucleusipsiMS1
Substantia innominataipsiSI-0.5
Substantia innominata basal partipsiSIB-0.5
Substantia innominata pars subcommissuralisipsiSIsc3
Substantia innominata sublenticular partipsiSIS1
Medial tuberal nucleusipsiMTuN-0.5
Lateral preoptic areaipsiLPO3
Medial preoptic areaipsiMPA3
Anterodorsal preoptic nucleusipsiADP-0.5
Medial preoptic nucleusipsiMPO-0.5
Median preoptic nucleusipsiMnPO2
Ventrolateral preoptic nucleusipsiVLPO3
Periventricular zone of the rostral half of the preoptic areaipsiPREOrpv-0.5
Strial part of the preoptic areaipsiStA-0.5
Tuberomammillary nucleusipsiTuM-0.5
Ventral tuberomammillary nucleusipsiVTM-0.5
Surrounding of the vascular organ of the lamina terminalisipsiSVOLT-0.5
Dorsomedial hypothalamic nucleusipsiDMHy2
Dorsomedial hypothalamic nucleus ventromedial borderipsiDMHyvmb-0.5
Lateral zoneipsiLHA3
Lateral hypothalamic area posterior partipsiLHAp3
Lateral hypothalamic area [Lateral zone tuberal level]ipsiLHtu3
Lateroanterior hypothalamic nucleusipsiLAH-0.5
Ventromedial part of the magnocellular supraoptic nucleusipsiMCLHvm1
Medial division of the hypothalamusipsiMdH3
Anterior hypothalamic areaipsiAHA-0.5
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe-0.5
Anterior hypothalamic nucleus rostral zoneipsiAHnR3
Dorsal hypothalamic nucleusipsiDo-0.5
Parastriatal nucleusipsiPS-0.5
Posterior hypothalamic areaipsiPHA-0.5
Posterior hypothalamic nucleusipsiPH-0.5
Subparaventricular zoneipsiSuPZ3
Ventromedial hypothalamic nucleusipsiVMH2
Periventricular zoneipsiPVZ3
Arcuate nucleusipsiArc1
Arcuate nucleus ventromedial borderipsiArcVMb-0.5
Paraventricular hypothalamic nucleus magnocellular part [Periventricular zone anterior region]ipsiPaAM1
Paraventricular hypothalamic nucleus parvicellular division dorsal partipsiPaPcD3
Paraventricular hypothalamic nucleus lateral parvocellular partipsiLPPa3
Paraventricular hypothalamic nucleus medial parvocellular part dorsal partipsiMPPap2
Paraventricular hypothalamic nucleus medial parvocellular part ventral partipsiMPPav3
Paraventricular hypothalamic nucleusipsiPa3
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag1
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo0.5
Dorsal perinuclear shell of the paraventricular hypothalamic nucleusipsiPapnzD3
Periventricular hypothalamic nucleusipsiPe-0.5
Suprachiasmatic nucleusipsiSCh-0.5
Supraoptic nucleus [Supraoptic region]ipsiSO-0.5
Medial mammillary nucleus lateral partipsiML-0.5
Premammillary nucleus dorsal partipsiPMD1
Premammillary nucleus ventral partipsiPMV1
Supramammillar nucleusipsiSuM-0.5
A8 dopamine cells retrorubral groupipsiRRF1
Retrochiasmatic areaipsiRCh-0.5
Central medial thalamic nucleusipsiCM1
Centrolateral thalamic nucleusipsiCL2
Rhomboid thalamic nucleusipsiRh1
Mediodorsal thalamic nucleusipsiMD3
Paratenial thalamic nucleusipsiPT0
Paraventricular thalamic nucleusipsiPV3
Reuniens thalamic nucleusipsiRe-0.5
Posterior intralaminar thalamic nucleusipsiPIL2
Subparafascicular thalamic nucleus caudal partipsiSPFc1
Subparafascicular thalamic nucleus medial partipsiSPFme1
Subparafascicular thalamic nucleus rostral partipsiSPFr2
Zona incertaipsiZI1
Zona incerta rostromedial partipsiZIrm3
Tuber cinereum areaipsiTC-0.5
Lateral habenular nucleusipsiLHb1
Pineal glandipsiPi4
Anterior lobe of pituitaryipsiAPit0
Intermediate lobe of pituitaryipsiIPit0
Posterior lobe of pituitaryipsiPPit0
Rostral part of the posterior lobe of pituitaryipsiPPitr-0.5
Vasopressinergic fiber bundle in the ventromedial stalk and postrior lobeipsiPITvaso-0.5
Dorsolateral funiculusipsidlft-2
Stria medullaris of the thalamusipsism1
Amygdaloid complexipsiAC0
Accessory basal nucleusipsiAB3
Basolateral amygdaloid nucleusipsiBL-0.5
Basomedial amygdaloid nucleusipsiBM-0.5
Lateral amygdaloid nucleusipsiLA3
Ventromedial part of the lateral nucleusipsiLaVM-0.5
Bed nucleus of the stria terminalisipsiBST2
Bed nucleus of the stria terminalis caudal part caudoventral regionipsiBSTCacv2
Bed nucleus of the stria terminalis caudal part perifornical regionipsiBSTCapf2
Bed nucleus of the stria terminalis intraamygdaloid divisionipsiBSTIA-0.5
Bed nucleus of the stria terminalis lateral divisionipsiBSTL3
Bed nucleus of the stria terminalis lateral division dorsal partipsiBSTLD-0.5
Bed nucleus of the stria terminalis lateral division intermediate partipsiBSTLI-0.5
Bed nucleus of the stria terminalis lateral division posterior partipsiBSTLP-0.5
Bed nucleus of the stria terminalis lateral division ventral partipsiBSTLV-0.5
Bed nucleus of the stria terminalis medial divisionipsiBSTM3
Bed nucleus of the stria terminalis medial division anterior partipsiBSTMA-0.5
Bed nucleus of the stria terminalis medial division posterior partipsiBSTMP-0.5
Bed nucleus of the stria terminalis medial division posterointermediate partipsiBSTMPI-0.5
Bed nucleus of the stria terminalis medial division posterolateral partipsiBSTMPL-0.5
Bed nucleus of the stria terminalis medial division ventral partipsiBSTMV-0.5
Central amygdaloid nucleusipsiCe2
Central amygdaloid nucleus lateral divisionipsiCeL-0.5
Central amygdaloid nucleus lateral division capsular partipsiCeC-0.5
Central amygdaloid nucleus medial divisionipsiCeM-0.5
Anterior cortical amygdaloid nucleusipsiACo-0.5
Posterior amygdaloid nucleusipsiCOAp2
Posterolateral cortical nucleusipsiPLCo-0.5
Medial amygdaloid nucleusipsiMe3
Medial amygdaloid nucleus anterior partipsiMeAn1
Medial amygdaloid nucleus anterodorsal partipsiMeAD-0.5
Medial amygdaloid nucleus posterior partipsiMePo2
Medial amygdaloid nucleus posterodorsal partipsiMePD-0.5
Medial amygdaloid nucleus posteroventral partipsiMePV-0.5
Amygdalohippocampal areaipsiAHi-0.5
Posteromedial cortical nucleusipsiPMCo-0.5
Medial globus pallidusipsiMGP2
Ventral pallidumipsiVP-0.5
Ventral pallidum medial partipsiVPm2
Accumbens nucleus shellipsiAcbSh-0.5
Medial accumbens shellipsiAcbShm-0.5
HippocampusipsiHIPP3
Dentate gyrusipsiDG-0.5
Dorsal hippocampus dentate gyrusipsiDDG-0.5
Field CA1 of hippocampusipsiCA11
Field CA1 of hippocampus ventral partipsiCA1v-0.5
Field CA3 of hippocampus ventral partipsiCA3v-0.5
Fimbria of the hippocampusipsifi-0.5
Piriform cortexipsiPir-0.5
Cingulate cortexipsiCg3
Anterior cingulate cortexipsiACC-0.5
Prelimbic cortexipsiPrL3
Infralimbic cortexipsiIL3
Frontal association cortexipsiFrA-0.5
Insular cortexipsiICX3
Rostromedial part of the frontal pole regionipsiFPFCRM3
Motoric regionsipsiM3
Medial prefrontal cortexipsimPFC2
Sensory regionsipsiSR3
Precommissural nucleusipsiPrC1
Medial geniculate nucleusipsiMG2
Olfactory bulb A16ipsiMOB1.5
Anterior olfactory nucleusipsiAON-0.5
Lateral septal nucleusipsiLS-0.5
Lateral septal nucleus dorsal partipsiLSD3
Lateral septal nucleus intermediate partipsiLSI2
Lateral septal nucleus intermediate part ventral subdivisionipsiLSVIV2
Dorsolateral subdivision of the lateral septal nucleus intermediate partipsiLSIDL1
Dorsomedial subdivision of the lateral septal nucleus intermediate partipsiLSIDM1
Lateral subdivision of the lateral septal nucleus intermediate partipsiLSIL2
Medial subdivision of the lateral septal nucleus intermediate partipsiLSIm1
Lateral septal nucleus ventral partipsiLSV1
Lateral septal nucleus enkephaline regionipsiLSek-0.5
Stria terminalisipsist2
Zona limitansipsiZL-0.5
Intermediomedial cell column C1ipsiIMMC11
Spinal cord layers C1ipsiSCLC10.5
Cervical segment 2ipsiCS2-0.5
Intermediomedial cell column C2ipsiIMMC21
Intermediomedial cell column C3ipsiIMMC31
Intermediomedial cell column C4ipsiIMMC41
Intermediomedial cell column C5ipsiIMMC51
Intermediomedial cell column C6ipsiIMMC61
Intermediomedial cell column C7ipsiIMMC71
Intermediomedial cell column C8ipsiIMMC81
Intermediolateral cell column T1ipsiIMLT14
Intermediomedial cell column T1ipsiIMMT11
Intermediolateral cell column T2ipsiIMLT24
Intermediomedial cell column T2ipsiIMMT21
Intermediolateral cell column T3ipsiIMLT34
Intermediomedial cell column T3ipsiIMMT31
Intermediolateral cell column T4ipsiIMLT44
Intermediomedial cell column T4ipsiIMMT41
Intermediolateral cell column T5ipsiIMLT53
Intermediomedial cell column T5ipsiIMMT51
Intermediolateral cell column T6ipsiIMLT63
Intermediomedial cell column T6ipsiIMMT61
Intermediolateral cell column T7ipsiIMLT73
Intermediomedial cell column T7ipsiIMMT71
Thoracal segment 8ipsiT8-0.5
Intermediolateral cell column T8ipsiIMLT83
Intermediomedial cell column T8ipsiIMMT81
Intermediolateral cell column T9ipsiIMLT93
Intermediomedial cell column T9ipsiIMMT91
Intermediolateral cell column T10ipsiIMLT103
Intermediomedial cell column T10ipsiIMMT101
Intermediolateral cell column T11ipsiIMLT113
Intermediomedial cell column T11ipsiIMMT111
Intermediolateral cell column T12ipsiIMLT123
Intermediomedial cell column T12ipsiIMMT121
Intermediolateral cell column T13ipsiIMLT133
Intermediomedial cell column T13ipsiIMMT131
Lumbar segment 1ipsiL13
Intermediolateral cell column L1ipsiIMLL13
Lumbar segment 2ipsiL23
Lumbar segment 3ipsiL33
Lumbar segment 4ipsiL43
Lumbar segment 5ipsiL53
Dorsolateral nucleus lumbal segment 5ipsiDLNL53
Dorsal horn L5ipsiDHL53
Ventral horn L5ipsiVHL53
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL53
Lumbar segment 6ipsiL63
Dorsolateral nucleus lumbal segment 6ipsiDLNL63
Dorsal horn L6ipsiDHL63
Ventral horn L6ipsiVHL63
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL63
Sacral segment 1ipsiSa13
Sacral segment 2ipsiSa23
Sacral segment 3ipsiSa33
Sacral segment 4ipsiSa43
Central graycontraCG1
Central gray lateral ventral partcontraCGVD-0.5
Central gray lateral ventral peripheral partcontraCGVDp-0.5
Central gray lateral ventral central partcontraCGVDc-0.5
Central gray medial partcontraCGMe1.5
Central gray pons partcontraCGP-0.5
Periaqueductal graycontraPAG-0.5
Lateral periaqueductal graycontraLPAG-0.5
Ventrolateral periaqueductal graycontraVLPAG-0.5
Central tegmental fieldcontraTGAC-0.5
Midbrain extrapyramidal areacontraMEA0.5
Substantia nigra compact partcontraSNC0.5
Substantia nigra lateral partcontraSNL0.5
Ventral tegmental area A10contraVTA-0.5
Ventrolateral tegmental areacontraVLTg-0.5
Pedunculopontine tegmental nucleuscontraPPTg0
A5 noradrenaline cellscontraA5-0.5
Barringtons nucleuscontraBar-0.5
Locus coeruleuscontraLC-0.5
Parapyramidal nucleuscontraPPy-0.5
Pontine tegmental fieldcontraPTF1
Pontine nucleicontraPn0
Dorsal reticular formationcontraDRF-0.5
Pontine reticular nucleus oral partcontraPnO-0.5
Cuneiforme nucleuscontraCnF-0.5
Parabrachial nucleuscontraPB0
Lateral parabrachial nucleuscontraLPB-0.5
Lateral parabrachial nucleus central partcontraLPBC-0.5
Parabrachial nucleus medialcontraPBnMe-0.5
Dorsal parvocellular reticular formationcontraDPCRt-0.5
Area postremacontraAP3
Hypoglossal nucleuscontra12S-0.5
Spinal trigeminal nucleus caudal partcontraSp5C1
Spinal trigeminal nucleus dorsal partcontraSp5ncD-0.5
Nucleus of the solitary tractcontraSol-0.5
Nucleus of the solitary tract lateral partcontraSolL-0.5
Nucleus of the solitary tract medial partcontraSolM-0.5
Dorsal motor nucleus of vaguscontra10-0.5
Dorsal raphe nucleuscontraDR1
Median raphe nucleuscontraMnR-0.5
Raphe magnus nucleuscontraRMg-0.5
Raphe pallidus nucleuscontraRPa-0.5
Raphe pallidus nucleus rostral partcontraRParo-0.5
Ventral lateral medulla oblongatacontraMVL-0.5
Cuneate nucleuscontraCu-0.5
Dorsal endopiriform nucleuscontraDEn-0.5
Islands of Calleja major islandcontraICjM-0.5
Diagonal band of BrocacontraDBB-0.5
Nucleus of the horizontal limb of the diagonal bandcontraHDB-0.5
Nucleus of the vertical limb of the diagonal bandcontraVDB-0.5
Medial septal nucleuscontraMS-0.5
Substantia innominatacontraSI-0.5
Substantia innominata basal partcontraSIB-0.5
Substantia innominata pars subcommissuraliscontraSIsc-0.5
Substantia innominata sublenticular partcontraSIS-0.5
Medial tuberal nucleuscontraMTuN-0.5
Lateral preoptic areacontraLPO-0.5
Medial preoptic areacontraMPA-0.5
Anterodorsal preoptic nucleuscontraADP-0.5
Medial preoptic nucleuscontraMPO-0.5
Ventrolateral preoptic nucleuscontraVLPO-0.5
Strial part of the preoptic areacontraStA-0.5
Tuberomammillary nucleuscontraTuM-0.5
Ventral tuberomammillary nucleuscontraVTM-0.5
Dorsomedial hypothalamic nucleuscontraDMHy-0.5
Dorsomedial hypothalamic nucleus ventromedial bordercontraDMHyvmb-0.5
Lateral zonecontraLHA-0.5
Lateral hypothalamic area posterior partcontraLHAp-0.5
Lateroanterior hypothalamic nucleuscontraLAH-0.5
Anterior hypothalamic areacontraAHA-0.5
Anteroventral periventricular nucleus [Anterior hypothalamic area]contraAVPe-0.5
Dorsal hypothalamic nucleuscontraDo-0.5
Parastriatal nucleuscontraPS-0.5
Posterior hypothalamic areacontraPHA-0.5
Posterior hypothalamic nucleuscontraPH-0.5
Arcuate nucleuscontraArc-0.5
Arcuate nucleus ventromedial bordercontraArcVMb-0.5
Paraventricular hypothalamic nucleuscontraPa3
Paraventricular hypothalamic nucleus parvocellular divisioncontraPavPo-0.5
Periventricular hypothalamic nucleuscontraPe-0.5
Suprachiasmatic nucleuscontraSCh-0.5
Supraoptic nucleus [Supraoptic region]contraSO-0.5
Premammillary nucleus dorsal partcontraPMD-0.5
Premammillary nucleus ventral partcontraPMV-0.5
Supramammillar nucleuscontraSuM-0.5
A8 dopamine cells retrorubral groupcontraRRF0
Retrochiasmatic areacontraRCh-0.5
Central medial thalamic nucleuscontraCM-0.5
Centrolateral thalamic nucleuscontraCL-0.5
Rhomboid thalamic nucleuscontraRh-0.5
Mediodorsal thalamic nucleuscontraMD-0.5
Paraventricular thalamic nucleuscontraPV-0.5
Reuniens thalamic nucleuscontraRe-0.5
Subparafascicular thalamic nucleus caudal partcontraSPFc0.5
Subparafascicular thalamic nucleus medial partcontraSPFme0.5
Subparafascicular thalamic nucleus rostral partcontraSPFr0.5
Zona incertacontraZI-0.5
Tuber cinereum areacontraTC-0.5
Lateral habenular nucleuscontraLHb-0.5
Stria medullaris of the thalamuscontrasm-0.5
Basomedial amygdaloid nucleuscontraBM-0.5
Ventromedial part of the lateral nucleuscontraLaVM-0.5
Bed nucleus of the stria terminaliscontraBST-0.5
Bed nucleus of the stria terminalis intraamygdaloid divisioncontraBSTIA-0.5
Bed nucleus of the stria terminalis lateral divisioncontraBSTL3
Bed nucleus of the stria terminalis lateral division dorsal partcontraBSTLD-0.5
Bed nucleus of the stria terminalis lateral division intermediate partcontraBSTLI-0.5
Bed nucleus of the stria terminalis lateral division ventral partcontraBSTLV-0.5
Bed nucleus of the stria terminalis medial divisioncontraBSTM3
Bed nucleus of the stria terminalis medial division anterior partcontraBSTMA-0.5
Bed nucleus of the stria terminalis medial division posterior partcontraBSTMP-0.5
Bed nucleus of the stria terminalis medial division posterointermediate partcontraBSTMPI-0.5
Bed nucleus of the stria terminalis medial division posterolateral partcontraBSTMPL-0.5
Bed nucleus of the stria terminalis medial division ventral partcontraBSTMV-0.5
Central amygdaloid nucleuscontraCe-1
Central amygdaloid nucleus lateral divisioncontraCeL-1
Central amygdaloid nucleus lateral division capsular partcontraCeC-0.5
Central amygdaloid nucleus medial divisioncontraCeM-0.5
Anterior cortical amygdaloid nucleuscontraACo-0.5
Posterolateral cortical nucleuscontraPLCo-0.5
Medial amygdaloid nucleus anterodorsal partcontraMeAD-0.5
Medial amygdaloid nucleus posterodorsal partcontraMePD-0.5
Medial amygdaloid nucleus posteroventral partcontraMePV-0.5
Amygdalohippocampal areacontraAHi-0.5
Posteromedial cortical nucleuscontraPMCo-0.5
Ventral pallidumcontraVP-0.5
HippocampuscontraHIPP1
Dentate gyruscontraDG-0.5
Field CA1 of hippocampus ventral partcontraCA1v-0.5
Field CA3 of hippocampus ventral partcontraCA3v-0.5
Fimbria of the hippocampuscontrafi-0.5
Piriform cortexcontraPir-0.5
Prelimbic cortexcontraPrL1
Infralimbic cortexcontraIL1
Insular cortexcontraICX1
Motoric regionscontraM1
Sensory regionscontraSR1
Precommissural nucleuscontraPrC-0.5
Anterior olfactory nucleuscontraAON-0.5
Lateral septal nucleuscontraLS1
Lateral septal nucleus dorsal partcontraLSD-0.5
Lateral septal nucleus intermediate partcontraLSI-0.5
Lateral septal nucleus intermediate part ventral subdivisioncontraLSVIV-0.5
Dorsolateral subdivision of the lateral septal nucleus intermediate partcontraLSIDL-0.5
Dorsomedial subdivision of the lateral septal nucleus intermediate partcontraLSIDM-0.5
Lateral subdivision of the lateral septal nucleus intermediate partcontraLSIL-0.5
Medial subdivision of the lateral septal nucleus intermediate partcontraLSIm-0.5
Lateral septal nucleus ventral partcontraLSV-0.5
Stria terminaliscontrast-0.5
Zona limitanscontraZL-0.5
Intermediolateral cell column T1contraIMLT13
Intermediolateral cell column T2contraIMLT23
Intermediolateral cell column T3contraIMLT33
Intermediolateral cell column T4contraIMLT43
Intermediolateral cell column T5contraIMLT52.5
Intermediolateral cell column T6contraIMLT62.5
Intermediolateral cell column T7contraIMLT72.5
Intermediolateral cell column T8contraIMLT82.5
Intermediolateral cell column T9contraIMLT92.5
Intermediolateral cell column T10contraIMLT102.5
Intermediolateral cell column T11contraIMLT112
Intermediolateral cell column T12contraIMLT122
Intermediolateral cell column T13contraIMLT132
Intermediolateral cell column L1contraIMLL12
Pterygopalatine ganglionipsiAutoPpG-0.5
Brown adipose tissueipsiOrgBAT-0.5
Adrenal glandipsiADRE-0.5
Submandibular glandipsiOrgsSubg-10
Gastrocnemius muscleipsiMuscGC-0.5
Lumbar epaxial musclesipsiMuscLep-0.5
KidneyipsiOrgsKid-0.5
SpleenipsiOrgSPL2
Submandibular glandcontraOrgsSubg-10
KidneycontraOrgsKid-0.5
SpleencontraOrgSPL-0.5

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG3
Medial longitudinal fasciculusipsimlf2
Periaqueductal grayipsiPAG0.5
Dorsal periaqueductal gray caudal partipsiDPAGC0
Dorsolateral periaqueductal gray caudal partipsiPAGdlc0
Dorsolateral periaqueductal gray rostral partipsiPAGdlr0
Ventrolateral periaqueductal gray caudal partipsiPAGvlc1
Ventrolateral periaqueductal gray rostral partipsiPAGvlr1
Laterodorsal tegmental nucleusipsiLDTg1
Ventral tegmental nucleusipsiVTg-0.5
Pedunculopontine tegmental nucleusipsiPPTg-0.5
Pedunculopontine tegmental nucleus pars compactaipsiPPNC2
Edinger Westphal nucleusipsiEW1.5
C3-zoneipsiC3ZO1
Locus coeruleusipsiLC-0.5
Nucleus incertus pars dissipataipsiNId3
Parabrachial nucleusipsiPB-0.5
Nucleus of the solitary tractipsiSol2
Nucleus of the solitary tract commissural partipsiSolC3
Nucleus of the solitary tract dorsal partipsiSolD0.5
Nucleus of the solitary tract medial partipsiSolM2
Nucleus of the solitary tract rostral partipsiSolro0.5
Dorsal raphe nucleusipsiDR3
Median raphe nucleusipsiMnR2
Ventral lateral medulla oblongataipsiMVL3
Caudal part of the paragigantocellular reticular nucleusipsiCPGi2
Lamina terminalisipsiLTer-0.5
Diagonal band of BrocaipsiDBB3
Nucleus of the horizontal limb of the diagonal bandipsiHDB-2
Nucleus of the vertical limb of the diagonal bandipsiVDB-2
Medial septal nucleusipsiMS-0.5
Substantia innominataipsiSI1
Medial preoptic areaipsiMPA3
Magnocellular preoptic nucleusipsiMCPO1
Median preoptic nucleusipsiMnPO-0.5
Dorsal median preoptic nucleusipsiMnPOD-0.5
Ventrolateral preoptic nucleusipsiVLPO3
Dorsolateral preoptic regionipsiPREOdL3
Dorsomedial hypothalamic nucleusipsiDMHy-0.5
Caudal part of the dorsomedial hypothalamic nucleusipsiDMHyC3
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area perifornical partipsiPFx2
Lateral hypothalamic area posterior partipsiLHAp-0.5
Tuberal division of the lateral hypothalamic areaipsiLHTC-0.5
Anterior hypothalamic areaipsiAHA3
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM2
Posterior hypothalamic areaipsiPHA-0.5
Ventromedial hypothalamic nucleusipsiVMH-0.5
Ventromedial hypothalamic nucleus central partipsiVMHC1
Arcuate nucleusipsiArc-0.5
Suprachiasmatic nucleusipsiSCh1
Suprachiasmatic nucleus dorsomedial partipsiSCnDM0.5
Suprachiasmatic nucleus ventrolateral partipsiSCnVL0
Supraoptic nucleus [Supraoptic region]ipsiSO3
Premammillary nucleus ventral partipsiPMV-0.5
Subfornical organipsiSFO-0.5
Subparafascicular thalamic nucleusipsiSPF3
Subparafascicular thalamic nucleus rostral partipsiSPFr2
RetinaipsiRET-10
Internal capsuleipsiic-2
Basolateral amygdaloid nucleusipsiBL0.5
Bed nucleus of the stria terminalisipsiBST-0.5
Bed nucleus of the stria terminalis fusiform partipsiFu-0.5
Bed nucleus of the stria terminalis intraamygdaloid divisionipsiBSTIA1.5
Bed nucleus of the stria terminalis lateral division dorsal partipsiBSTLD-0.5
Bed nucleus of the stria terminalis medial divisionipsiBSTM1
Central amygdaloid nucleusipsiCe4
Central amygdaloid nucleus lateral divisionipsiCeL1
Central amygdaloid nucleus lateral division medial partipsiCeLm1
Central amygdaloid nucleus medial divisionipsiCeM2
Central amygdaloid nucleus ventral partipsiCeV2
Interstitial nucleus of the posterior limb of the anterior commissure medial partipsiIPACM-0.5
Medial amygdaloid nucleusipsiMe2
Globus pallidusipsiGP0.5
Ventral pallidum rostral partipsiVPr1
Accumbens nucleusipsiAc3
Posteromedial accumbensipsiAcbPM3
Caudate putamenipsiCPu0.5
Prelimbic cortexipsiPrL2
Infralimbic cortexipsiIL3
Around anterior commissureipsiAac0
Intergeniculate leaf rostrocaudal partipsiIGLR3
Ventral lateral geniculate nucleusipsiVLG-0.5
Interpeduncular nucleusipsiIP-0.5
Olfactory tubercle medial partipsiTuOMP3
Olfactory tubercle ventral partipsiTuOV1
Lateral septal nucleusipsiLS3
Lateral septal nucleus caudal partipsiLSc1
Lateral septal nucleus intermediate partipsiLSI-2
Lateral septal nucleus rostral partipsiLSr2
Lateral septal nucleus mediolateral partipsiLSML3
Septofimbrial nucleusipsiSFi-2
Triangular septal nucleusipsiTS-2
Medial longitudinal fasciculuscontramlf1
Periaqueductal graycontraPAG0
Dorsal periaqueductal gray caudal partcontraDPAGC0
Dorsolateral periaqueductal gray caudal partcontraPAGdlc0
Dorsolateral periaqueductal gray rostral partcontraPAGdlr0
Ventrolateral periaqueductal gray caudal partcontraPAGvlc0.5
Ventrolateral periaqueductal gray rostral partcontraPAGvlr0.5
Laterodorsal tegmental nucleuscontraLDTg0.5
C3-zonecontraC3ZO-0.5
Prepositus nucleuscontraPr1.5
Nucleus of the solitary tractcontraSol1
Nucleus of the solitary tract commissural partcontraSolC2
Nucleus of the solitary tract medial partcontraSolM0.5
Ventral lateral medulla oblongatacontraMVL-0.5
Caudal part of the dorsomedial hypothalamic nucleuscontraDMHyC3
Ventromedial hypothalamic nucleus central partcontraVMHC0.5
Suprachiasmatic nucleus dorsomedial partcontraSCnDM-0.5
Stomach wallipsiOrgsStomWS-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





Homepage | Staff | neuroVIISAS | Rat connectome | Other connectomes | Neuroimaging | Neurodegeneration | Students | Links | Publications