University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Septohippocampal nucleus left


Abbreviation
SHi
Color       
Superior regionsHippocampal regions

SynonymsAbbr.Language
Septohippocampal nucleusShiEng
Septohippocampal nucleusSHiEng
 SHEng
Septohippocampal complex Eng
Septohippocampal nucleusSHiEng

SubregionsSide
Septohippocampal nucleus anterior partleft

Output to

NameSideAbbr.WeightDetails
Ventral periaqueductal grayipsiVPAG1
Ventral tegmental area A10ipsiVTA1
Mesencephalic reticular formationipsiMRF1
Nucleus of the diagonal band of Broca ventral partipsiVDBV3
Angular part of the ventral diagonal bandipsiVDBVA3
Medial septal nucleusipsiMS1
Basal nucleus MeynertipsiB3
Substantia innominataipsiSI2
Caudolateral region of the lateral preoptic areaipsiLPOcL3
Magnocellular preoptic nucleusipsiMCPO-0.5
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0.5
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area juxtadorsomedial regionipsiJDM1
Lateral hypothalamic area rostral partipsiLHro1
Supramammillar nucleusipsiSuM3
Central amygdaloid nucleus rostral partipsiCerp1
Anterior amygdaloid areaipsiAA1
Fundus of the striatum medial partipsiFSm2
Parasubthalamic nucleusipsiPSTh0.5
Medial prefrontal cortexipsimPFC1
Olfactory tubercle lateral partipsiTuOL0.5
Lateral septal nucleus rostral partipsiLSr2

Input from

NameSideAbbr.WeightDetails
Ventrolateral periaqueductal grayipsiVLPAG-0.5
Prelocus coeruleus nucleusipsiPLC1
Parabrachial nucleus medialipsiPBnMe1
Parabrachial nucleus waist partipsiPBW1
Mesencephalic trigeminal nucleusipsiMe51
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus caudal part non serotoninergic populationipsiDRCnsp0.5
Dorsal raphe nucleus dorsal part non serotoninergic populationipsiDRDnsp0.5
Dorsal raphe nucleus interfascicular part non serotoninergic populationipsiDRInsp0.5
Dorsal raphe nucleus lateral wing non serotoninergic populationipsiDRIwnsp0.5
Dorsal raphe nucleus midrostrocaudal part non serotoninergic populationipsiDRmrcnsp0.5
Dorsal raphe nucleus rostral part non serotoninergic populationipsiDRrnsp0.5
Dorsal raphe nucleus ventral part non serotoninergic populationipsiDRVnsp0.5
Dorsal raphe nucleus ventrolateral part non serotoninergic populationipsiDRVLnsp0.5
Rostral linear nucleus of the rapheipsiRLi1
Median raphe nucleusipsiMnR3
Nucleus of the vertical limb of the diagonal bandipsiVDB-0.5
Medial septal nucleus medial partipsiMSm-0.5
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral hypothalamic areaipsiLH1
Lateral hypothalamic area anterior partipsiLHAa1
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0.5
Lateral hypothalamic area perifornical partipsiPFx1
Lateral hypothalamic area posterior partipsiLHAp1
Tuberal division of the lateral hypothalamic areaipsiLHTC1
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM1
Posterior hypothalamic nucleus caudal partipsiPHCa1
Posterior hypothalamic nucleus rostral partipsiPHRo1
Supramammillar nucleus lateral part lateral subpartipsiSuMLL2
Supramammillar nucleus lateral part medial subpartipsiSuMLM3
Supramammillar nucleus medial partipsiSuMM2
Tuber cinereum areaipsiTC-0.5
Dentate gyrusipsiDG0.5
Infralimbic cortexipsiIL2
Medullary reticular nucleus dorsal partcontraMdDd1
Dentate gyruscontraDG0

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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