University of Rostock

Department of Anatomy

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Rat connectome



Tuber cinereum area left


Abbreviation
TC
Color       
Superior regionsDiencephalon

SynonymsAbbr.Language
Tuber cinereum areaTCEng
Area of the tuber cinereum  
Tuberal hypothalamus  
Tuber cinereum region  
Tuber cinereumTCEng
Area tuber cinereum Eng
Region of the tuber cinereum  
Hypothalamic defence area  
Tuber cinereum hypothalamic areaTCEng

SubregionsSide
Tuber cinereum area caudal partleft

Output to

NameSideAbbr.WeightDetails
Central gray alpha partipsiCGA-0.5
Nucleus of DarkschewitschipsiDk0
Oculomotor nucleusipsi30
Periaqueductal grayipsiPAG-0.5
Dorsal periaqueductal grayipsiDPAG-0.5
Dorsolateral periaqueductal grayipsiDLPAG-0.5
Periaqueductal gray rostral partipsiPAGR3
Microcellular tegmental nucleusipsiMiTg-0.5
Ventral tegmental area A10ipsiVTA1
Parabrachial pigmented nucleusipsiPBP-0.5
Ventrolateral tegmental areaipsiVLTg1
Edinger Westphal nucleusipsiEW1
Paraflocculus ventral partipsiPFlv1
Anterior lobeipsiAnL1
FlocculusipsiFl1
Pontine nucleiipsiPn1
Parabrachial nucleusipsiPB-0.5
Koelliker Fuse nucleusipsiKF-0.5
Gigantocellular reticular nucleus alpha partipsiGiA-0.5
Dorsal raphe nucleusipsiDR2
Dorsal raphe nucleus caudal partipsiDRC1.5
Dorsal raphe nucleus dorsomedial subdivisionipsiDRdm1
Dorsal raphe nucleus dorsomedian partipsiDRdmm1
Dorsal raphe nucleus lateral wingipsiDRlw3
Dorsal raphe nucleus caudal midlineipsiDRcmip0.5
Dorsal raphe nucleus rostral partipsiDRr1.5
Dorsal raphe nucleus ventromedial subdivisionipsiDRvme1
Median raphe nucleusipsiMnR1
Central raphe nucleus dorsal partipsiCRNdp2
Raphe magnus nucleusipsiRMg-0.5
Ventral lateral medulla oblongataipsiMVL1
Caudal ventrolateral medulla lateral partipsiCVLMl1
Paragigantocellular reticular nucleusipsiPGi1
Retrotrapezoid nucleusipsiRTN1
Rostral ventral respiratory groupipsiRVRG-0.5
Median eminence middle portion subependymal layeripsiMEmise0
Diagonal band of BrocaipsiDBB2
Nucleus of the vertical limb of the diagonal bandipsiVDB-0.5
Substantia innominata anterior partipsiSIA2
Substantia innominata posterior partipsiSIP2
Substantia innominata ventral partipsiSIV1
Magnocellular preoptic nucleusipsiMCPO2
Dorsal tenia tectaipsiDTT-0.5
Lateral hypothalamic areaipsiLH-0.5
Arcuate nucleus ventromedial partipsiArcVM0
Paraventricular hypothalamic nucleus medial parvocellular partipsiMPPa3
Paraventricular hypothalamic nucleusipsiPa2
Supramammillar nucleus lateral partipsiSuML-0.5
Reuniens thalamic nucleusipsiRe1
Lateral habenular nucleusipsiLHb-0.5
Intermediate lobe of pituitaryipsiIPit0
Posterior lobe of pituitaryipsiPPit0
Amygdaloid complexipsiAC0.5
Bed nucleus of the stria terminalis caudal part caudoventral regionipsiBSTCacv1
Bed nucleus of the stria terminalis caudal part perifornical regionipsiBSTCapf1
Bed nucleus of the stria terminalis lateral divisionipsiBSTL2
Bed nucleus of the stria terminalis medial divisionipsiBSTM2
Central amygdaloid nucleusipsiCe-0.5
Posterior amygdaloid nucleusipsiCOAp2
Medial amygdaloid nucleusipsiMe2
Accumbens nucleus coreipsiAcbC1
Accumbens nucleus shellipsiAcbSh1
Septohippocampal nucleusipsiSHi-0.5
Prelimbic cortexipsiPrL-0.5
Infralimbic cortex layer 5ipsiILL5-0.5
Infralimbic cortex layer 6ipsiILL6-0.5
Dorsal peduncular cortexipsiDP-0.5
Rostromedial part of the frontal pole regionipsiFPFCRM3
Medial prefrontal cortexipsimPFC0.5
Medial orbital cortexipsiMO-0.5
Lateral septal nucleusipsiLS2
Intermediolateral cell column T2ipsiIMLT2-0.5
Intermediolateral cell column T3ipsiIMLT3-0.5
Intermediolateral cell column T7ipsiIMLT7-0.5
Intermediolateral cell column T8ipsiIMLT8-0.5
Intermediolateral cell column T9ipsiIMLT9-0.5
Intermediolateral cell column T11ipsiIMLT11-0.5
Intermediolateral cell column T12ipsiIMLT12-0.5
Intermediolateral cell column T13ipsiIMLT13-0.5
Intermediolateral cell column L1ipsiIMLL1-0.5
Periaqueductal gray rostral partcontraPAGR-0.5
Ventrolateral tegmental areacontraVLTg1
Gigantocellular reticular nucleus alpha partcontraGiA-0.5
Raphe magnus nucleuscontraRMg-0.5
Ventral lateral medulla oblongatacontraMVL0.5
Paragigantocellular reticular nucleuscontraPGi-0.5
Retrotrapezoid nucleuscontraRTN0.5
Bed nucleus of the stria terminalis caudal part caudoventral regioncontraBSTCacv1
Bed nucleus of the stria terminalis caudal part perifornical regioncontraBSTCapf1
Bed nucleus of the stria terminalis lateral divisioncontraBSTL2
Bed nucleus of the stria terminalis medial divisioncontraBSTM2
Intercapsular brown adipose tissueipsiOrgBATi-10
ClitorisipsiOrgCLi-0.5
KidneyipsiOrgsKid-0.5
KidneycontraOrgsKid-0.5

Input from

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG0.5
Dorsal periaqueductal gray caudal partipsiDPAGC0
Dorsolateral periaqueductal gray caudal partipsiPAGdlc0.5
Dorsolateral periaqueductal gray rostral partipsiPAGdlr0.5
Ventrolateral periaqueductal gray caudal partipsiPAGvlc0.5
Ventrolateral periaqueductal gray rostral partipsiPAGvlr2
Ventral tegmental area A10ipsiVTA4
Median eminence middle portion subependymal layeripsiMEmise1
Substantia innominataipsiSI-0.5
Magnocellular preoptic nucleusipsiMCPO-0.5
Lateral hypothalamic areaipsiLH4
Lateral hypothalamic area perifornical partipsiPFx4
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM4
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM4
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL1
Arcuate nucleus ventromedial partipsiArcVM2
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP-0.5
Ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsivPaAP-0.5
Adjacent to the ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAPav-0.5
Anterior part of periventricular parvocellular subdivision of paraventricular hypothalamic nucleusipsiPVPapvA-0.5
Perifornical nucleusipsiPeF-0.5
Medial group of the dorsal thalamusipsiMED1.5
Mediodorsal thalamic nucleusipsiMD1.5
Paraventricular thalamic nucleusipsiPV2
Reuniens thalamic nucleusipsiRe1
Posterior intralaminar thalamic nucleusipsiPIL3
Subparafascicular thalamic nucleusipsiSPF3
Medial habenular nucleusipsiMHb1.5
RetinaipsiRET-0.5
Internal capsuleipsiic-2
Basolateral amygdaloid nucleusipsiBL0
Bed nucleus of the stria terminalis intraamygdaloid divisionipsiBSTIA1.5
Central amygdaloid nucleusipsiCe3
Central amygdaloid nucleus lateral divisionipsiCeL0.5
Central amygdaloid nucleus medial divisionipsiCeM1.5
Medial amygdaloid nucleusipsiMe3
Globus pallidusipsiGP0.5
Caudate putamenipsiCPu0.5
Dentate gyrusipsiDG1
Lateral geniculate complexipsiLG1
Lateral septal nucleus dorsal partipsiLSD0
Lateral septal nucleus intermediate partipsiLSI0
Lateral septal nucleus ventral partipsiLSV0
Anteroposterior extension of the lateral septal nucleusipsiLSap0
Ventroposterior extension of the lateral septal nucleusipsiLSvp0
Periaqueductal graycontraPAG0
Dorsal periaqueductal gray caudal partcontraDPAGC0
Dorsolateral periaqueductal gray caudal partcontraPAGdlc0
Dorsolateral periaqueductal gray rostral partcontraPAGdlr0
Ventrolateral periaqueductal gray caudal partcontraPAGvlc0
Ventrolateral periaqueductal gray rostral partcontraPAGvlr0.5
Ventral tegmental area A10contraVTA4
Ventromedial hypothalamic nucleus ventrolateral partcontraVMHVL0.5
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]contraPaAP-0.5
Ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]contravPaAP-0.5
Adjacent to the ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]contraPaAPav-0.5
Anterior part of periventricular parvocellular subdivision of paraventricular hypothalamic nucleuscontraPVPapvA-0.5
Perifornical nucleuscontraPeF-0.5
Medial group of the dorsal thalamuscontraMED0
Mediodorsal thalamic nucleuscontraMD0
Paraventricular thalamic nucleuscontraPV1.5
Medial habenular nucleuscontraMHb0
RetinacontraRET-0.5
Central amygdaloid nucleuscontraCe-1
Dentate gyruscontraDG0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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