University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Medial septal nucleus medial part left


Abbreviation
MSm
Color       
Superior regionsMedial septal nucleus

SynonymsAbbr.Language
Medial aspect of the medial septal nucleus Eng
Medial septal nucleus middle part Eng
Medial part of the medial septum Eng
Medial septal nucleus medial partMSmEng

Output to

NameSideAbbr.WeightDetails
Ventral tegmental area A10ipsiVTA1
MyelencephalonipsiMYC-0.5
Dorsal linear nucleus of the rapheipsiLIRD1
Median raphe nucleusipsiMnR1
Dorsal fornixipsidf-0.5
Medial preoptic areaipsiMPA-0.5
Median preoptic nucleusipsiMnPO-2
Tenia tectaipsiTT2
DiencephalonipsiDEC-0.5
Lateral hypothalamic area [Lateral zone mammillary level]ipsiLHLZM-0.5
Ventromedial hypothalamic nucleusipsiVMH1
Lateral mammillary nucleusipsiLM-0.5
Medial mammillary nucleus medial partipsiMM-0.5
Supramammillar nucleus ventral partipsiSuMV-0.5
Paratenial thalamic nucleusipsiPT-0.5
Lateral habenular nucleusipsiLHb-0.5
Medial habenular nucleusipsiMHb-0.5
Genu of the corpus callosumipsigcc-2
Stria medullaris of the thalamusipsism-0.5
HippocampusipsiHIPP-0.5
Dorsal hippocampusipsiHIPPd-0.5
Frontal pole of the hippocampusipsiHIPPFr-0.5
Dentate gyrusipsiDG-0.5
Dorsal hippocampus dentate gyrusipsiDDG2.5
Ventral hippocampus dentate gyrusipsiVDG3
Dentate gyrus molecular layeripsiDGmL1
Hilus of the dentate gyrus subgranular layeripsiHilsg-0.5
Hilus of the dentate gyrus at temporal levelsipsiHiltL-0.5
Field CA1 of hippocampusipsiCA1-0.5
Field CA1 of hippocampus dorsalipsiCA1d2.5
Field CA1 of hippocampus ventral partipsiCA1v3
Field CA2 of hippocampus dorsal partipsiCA2D2.5
Field CA2 of hippocampus ventral partipsiCA2V3
Field CA3 of hippocampus dorsal partipsiCA3d2.5
Field CA3 of hippocampus layer stratum radiatumipsiCA3rad-0.5
Field CA3 of hippocampus layer stratum oriensipsiCA3or-0.5
Field CA3 of hippocampus ventral partipsiCA3v3
Septal part of the field CA3 of hippocampusipsiSCA3-0.5
SubiculumipsiS-0.5
Subiculum dorsal partipsiSd2
Subiculum deep part of layer 1ipsiSudL1-0.5
Subiculum ventral partipsiSv2
Septohippocampal nucleusipsiSHi-0.5
Fimbria fornix regionipsififo-0.5
PresubiculumipsiPrS-0.5
Presubiculum dorsal partipsiPrD2
Presubiculum ventral partipsiPrSv2.5
ParasubiculumipsiPaS2.5
Parasubiculum superficial layersipsiPaSsL-0.5
Dorsolateral entorhinal cortexipsiDLEnt3
Lateral entorhinal cortexipsiLEnt-0.5
Medial entorhinal cortexipsiMEnt1.5
Ventrolateral entorhinal cortexipsiVLENT2
Ventromedial entorhinal cortexipsiVMEA1.5
Retrosplenial agranular cortexipsiRSA1
Retrosplenial granular cortexipsiRSGra2
Cingulate cortexipsiCg-0.5
Dorsal anterior cingulate cortexipsiDACC1
Ventral anterior cingulate cortexipsiVACC1
Prelimbic cortexipsiPrL1
Infralimbic cortexipsiIL1.5
Visual regionsipsiVR1
Medial orbital cortexipsiMO1.5
Anterior olfactory nucleusipsiAON1.5
Septofimbrial nucleusipsiSFi-2
Triangular septal nucleusipsiTS-2
Dorsal linear nucleus of the raphecontraLIRD0.5

Input from

NameSideAbbr.WeightDetails
Ventral tegmental area A10ipsiVTA-0.5
Median raphe nucleus medial partipsiMnRm-0.5
Lateral median raphe nucleusipsiLMnR-0.5
Supramammillar nucleusipsiSuM1
Supramammillar nucleus lateral partipsiSuML-0.5
Supramammillar nucleus lateral part medial subpartipsiSuMLM-0.5
Supramammillar nucleus lateral two-thirdsipsiSuMLtt3
Supramammillar nucleus rostrocaudal levelipsiSuMrc-0.5
Intermediate supramammillar nucleus at caudal levelsipsiSuMic-0.5
Medial habenular nucleus lateral partipsiMHbL-0.5
Medial habenular nucleus medial partipsiMHbm-0.5
Field CA2 of hippocampus septal partipsiCA2s-0.5
Septal part of the field CA3 of hippocampusipsiSCA3-0.5
Interpeduncular nucleus dorsal subnucleusipsiIPRd-0.5
Interpeduncular nucleus ventral partipsiIPv-0.5
Lateral septal nucleus dorsal partipsiLSD-0.5
Lateral septal nucleus ventral partipsiLSV-0.5
Septofimbrial nucleusipsiSFi3
Supramammillar nucleuscontraSuM0.5
Supramammillar nucleus rostrocaudal levelcontraSuMrc-0.5
Field CA2 of hippocampus septal partcontraCA2s-0.5
Septal part of the field CA3 of hippocampuscontraSCA3-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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