University of Rostock

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Rat connectome



Spinal cord layer 9 C5 left


Abbreviation
SCL9C5
Color       
Superior regionsVentral horn C5

SynonymsAbbr.Language
Spinal cord layer 9 C5SCL9C5Eng

Output to

NameSideAbbr.WeightDetails
Lateral periaqueductal grayipsiLPAG1
Gigantocellular reticular nucleusipsiGi-0.5
Raphe pallidus nucleusipsiRPa1
Lateral paragigantocellular nucleusipsiLPGi-0.5
Ventrobasal complexipsiVB1
Cervical segment 7ipsiCS7-1
Spinal cord layers T2ipsiSCLT20
Lumbar segmentsipsiLSeg0
Lumbar segment 1ipsiL11
Spinal cord layer 9 L1ipsiSCL9L12
Lumbar segment 2ipsiL21
Spinal cord layer 9 L2ipsiSCL9L22
Spinal cord layer 9 L3ipsiSCL9L32
Raphe pallidus nucleuscontraRPa1
Cervical segment 7contraCS7-1
Spinal cord layers T2contraSCLT20
Lumbar segmentscontraLSeg0
Lumbar segment 1contraL12
Spinal cord layer 9 L1contraSCL9L11
Lumbar segment 2contraL22
Spinal cord layer 9 L2contraSCL9L21
Spinal cord layer 9 L3contraSCL9L31
Ventromedial gray substance at the level of the lumbal segment 4contraL4vmg3
Median nerveipsimen-0.5
Musculocutaneous nerveipsimuscut-2
Phrenic nerveipsiphren-0.5
Radial nerveipsirad-2
Deep muscle branch of the radial nerveipsiraddm2
Ulnar nerveipsiuln-0.5
Suprascapular nerveipsiPNSLsc-2
Subscapular nerveipsiPNSLscn-2
Lateral anterior thoracic nerveipsiPNSLatn-2
Median nervecontramen-0.5
Ulnar nervecontrauln-0.5
Cervical oesophagusipsiOrgsOesC2
Cervical oesophaguscontraOrgsOesC2
DiaphragmaipsiMuscDia-0.5
Biceps brachii muscleipsiMuscFxFoBB3
Forelimb extensor digitorum communisipsiMuscFoEDC-0.5
Rhomboid muscleipsiMuscRho-0.5
Acromiotrapezius muscleipsiMuscAcrot-0.5
Scalene muscleipsiMuscSca-0.5
Trachea sideipsiOrgsTras2
Trachea sidecontraOrgsTras1

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
Red nucleusipsiR2.5
Red nucleus caudal partipsiRnCa3
Red nucleus rostral partipsiRnRo3
Ventrolateral tegmental areaipsiVLTg2
Laterodorsal tegmental nucleusipsiLDTg-0.5
Interstitial nucleus of CajalipsiInC1.5
A5 noradrenaline cellsipsiA52
Locus coeruleusipsiLC3
Caudal part of ventral locus coeruleusipsiLCveca3
Magnocellular reticular nucleusipsiNRMC-0.5
Medial reticular formationipsiRFm-0.5
Ventral reticular formationipsiVRF2
Ventrolateral reticular formationipsiVLRF-0.5
Pontine reticular nucleusipsiPRN3
Dorsolateral pontine reticular formationipsiPRNDL1
Pontine reticular nucleus oral partipsiPnO0.5
Pontine reticular nucleus caudal partipsiPNC1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi3
Gigantocellular reticular nucleus medial partipsiGiM-0.5
Gigantocellular reticular nucleus rostral partipsiGiRo-0.5
Subcoeruleus nucleusipsiSubC3
Boetzinger complexipsiBo0
Dorsal part of spinal trigeminal nucleus oral partipsiSp5OD-0.5
Ventral part of spinal trigeminal nucleus oral partipsiSp5OV-0.5
Raphe magnus nucleusipsiRMg3
Raphe pallidus nucleusipsiRPa3
Rostral ventrolateral medullaipsiRVLM3
Rostral part of the ventromedial medulla oblongataipsiRMeObvm2
Lateral hypothalamic areaipsiLH1
Paraventricular hypothalamic nucleusipsiPa0.5
Zona incerta rostromedial partipsiZIrm0
Somatomotoric regionsipsiSMR3
Lateral agranular prefrontal cortexipsiAGl1
Medial agranular prefrontal cortexipsiAGm1
Primary somatosensory cortexipsiS11
Secondary somatosensory cortexipsiS21
Dorsal root ganglion C5ipsiDRGC5-0.5
Area X T1ipsiSCL10T1-0.5
Spinal cord layer 5 T1ipsiSCL5T1-0.5
Spinal cord layer 6 T1ipsiSCL6T1-0.5
Spinal cord layer 3 T1ipsiSCL3T1-0.5
Spinal cord layer 4 T1ipsiSCL4T1-0.5
Spinal cord layer 1 T1ipsiSCL1T1-0.5
Spinal cord layer 2 T1ipsiSCL2T1-0.5
Spinal cord layer 7 T1ipsiSCL7T1-0.5
Spinal cord layer 8 T1ipsiSCL8T1-0.5
Area X T2ipsiSCL10T2-0.5
Spinal cord layer 5 T2ipsiSCL5T2-0.5
Spinal cord layer 6 T2ipsiSCL6T2-0.5
Spinal cord layer 3 T2ipsiSCL3T2-0.5
Spinal cord layer 4 T2ipsiSCL4T2-0.5
Spinal cord layer 1 T2ipsiSCL1T2-0.5
Spinal cord layer 2 T2ipsiSCL2T2-0.5
Spinal cord layer 7 T2ipsiSCL7T2-0.5
Spinal cord layer 8 T2ipsiSCL8T2-0.5
Superior colliculus lateral partcontraSCL-0.5
Locus coeruleuscontraLC2
Caudal part of ventral locus coeruleuscontraLCveca0.5
Magnocellular reticular nucleuscontraNRMC-0.5
Medial reticular formationcontraRFm-0.5
Pontine reticular nucleus oral partcontraPnO0.5
Pontine reticular nucleus caudal partcontraPNC0.5
Gigantocellular reticular nucleuscontraGi1
Gigantocellular reticular nucleus medial partcontraGiM-0.5
Dorsal part of spinal trigeminal nucleus oral partcontraSp5OD-0.5
Ventral part of spinal trigeminal nucleus oral partcontraSp5OV-0.5
Somatomotoric regionscontraSMR3
Lateral agranular prefrontal cortexcontraAGl-0.5
Forelimb motor cortexcontraFMCx3
Primary somatosensory cortexcontraS11
Primary somatosensory cortex forelimb regioncontraS1FL1
Phrenic nerveipsiphren-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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