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Rat connectome



Spinal cord layer 4 T1 left


Abbreviation
SCL4T1
Color       
Superior regionsNucleus proprius T1

SynonymsAbbr.Language
Spinal cord layer 4 T1SCL4T1Eng

SubregionsSide
Ventral lateralmost region of the spinal cord layer 4 T1left

Output to

NameSideAbbr.WeightDetails
Dorsolateral periaqueductal grayipsiDLPAG1
Lateral periaqueductal grayipsiLPAG1
Periaqueductal gray lateroventral partipsiPAGLV0.5
Ansiform lobule crus 1ipsiCrus10
Simple lobuleipsiSim0
Cerebellar lobule 2ipsiCERL23
Cerebellar lobule 3ipsiCERL33
Cerebellar lobule 1ipsiCERL13
Cerebellar lobule 4ipsiCERL43
Cerebellar lobule 5ipsiCERL53
Paravermal region of anterior lobeipsiPVAnL0
Cerebellar lobule 7ipsiCERL71
Cerebellar lobule 7aipsiCERL7a1
Cerebellar lobule 7bipsiCERL7b1
Cerebellar lobule 8ipsiCERL83
Cerebellar lobule 9ipsiCERL91
Cerebellar lobule 6ipsiCERL61
Cerebellar lobule 6aipsiCERL6a1
Cerebellar lobule 6bipsiCERL6b1
Cerebellar lobule 6cipsiCERL6c1
Cerebellar lobule 6dipsiCERL6d1
Lateral parabrachial nucleus internal partipsiLPBI2
Lateral parabrachial nucleus lateral partipsiLPBL0
Parabrachial nucleus central lateral partipsiPBCeL1
Parabrachial nucleus dorsolateral partipsiPBDL1
Parabrachial nucleus superior lateralipsiPBSL1
Gigantocellular reticular nucleusipsiGi2
Lateral reticular nucleusipsiLRt2
Subnucleus reticularis dorsalisipsiSRD2
Medullary reticular nucleus dorsal partipsiMdDd3
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd3
Spinal vestibular nucleusipsiSpVe-0.5
Nucleus of the solitary tractipsiSol-0.5
Nucleus of the solitary tract lateral partipsiSolL3
Nucleus of the solitary tract medial partipsiSolM2
Dorsal column nucleiipsiDCN3
Cuneate nucleusipsiCu2
Cuneate nucleus lemniscal neuronsipsiCuLem-0.5
Gracile nucleus principal partipsiGr-0.5
Nucleus ZipsiZ3
Lateral paragigantocellular nucleusipsiLPGi2
Medial septal nucleusipsiMS-0.5
Dorsal regionipsiDHR-0.5
Lateral hypothalamic areaipsiLH1.5
Medial division of the hypothalamusipsiMdH1
Dorsal hypothalamic areaipsiDA1.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1.5
Posterior hypothalamic areaipsiPHA-0.5
Paraventricular hypothalamic nucleusipsiPa1.5
Suprachiasmatic nucleusipsiSCh1.5
Supraoptic decussationipsisox-2
Supraoptic nucleus [Supraoptic region]ipsiSO1.5
Centrolateral thalamic nucleusipsiCL1
Ventrobasal complexipsiVB1
Posterior groupipsiPTG1
Caudalmost portion of the optic chiasmipsioxcm-2
TelencephalonipsiTEL-0.5
Amygdaloid complexipsiAC-0.5
Basal gangliaipsiBG-0.5
Medial accumbensipsiAcbM-0.5
Infralimbic cortexipsiIL-0.5
Medial orbital cortexipsiMO-0.5
Cervical segment 1ipsiCS13
Lateral cervical nucleus C1ipsiLatCC1-0.5
Cervical segment 2ipsiCS23
Lateral cervical nucleus C2ipsiLatCC2-0.5
Cervical segment 3ipsiCS33
Lateral cervical nucleus C3ipsiLatCC3-0.5
Cervical segment 4ipsiCS43
Lateral cervical nucleus C4ipsiLatCC4-0.5
Area X C4ipsiSCL10C4-0.5
Spinal cord layer 5 C4ipsiSCL5C4-0.5
Spinal cord layer 6 C4ipsiSCL6C4-0.5
Spinal cord layer 3 C4ipsiSCL3C4-0.5
Spinal cord layer 4 C4ipsiSCL4C4-0.5
Spinal cord layer 7 C4ipsiSCL7C4-0.5
Spinal cord layer 8 C4ipsiSCL8C4-0.5
Spinal cord layer 9 C4ipsiSCL9C4-0.5
Cervical segment 5ipsiCS53
Area X C5ipsiSCL10C5-0.5
Spinal cord layer 5 C5ipsiSCL5C5-0.5
Spinal cord layer 6 C5ipsiSCL6C5-0.5
Spinal cord layer 3 C5ipsiSCL3C5-0.5
Spinal cord layer 4 C5ipsiSCL4C5-0.5
Spinal cord layer 7 C5ipsiSCL7C5-0.5
Spinal cord layer 8 C5ipsiSCL8C5-0.5
Spinal cord layer 9 C5ipsiSCL9C5-0.5
Cervical segment 6ipsiCS63
Area X C6ipsiSCL10C6-0.5
Spinal cord layer 5 C6ipsiSCL5C6-0.5
Spinal cord layer 6 C6ipsiSCL6C6-0.5
Spinal cord layer 3 C6ipsiSCL3C6-0.5
Spinal cord layer 4 C6ipsiSCL4C6-0.5
Spinal cord layer 7 C6ipsiSCL7C6-0.5
Spinal cord layer 8 C6ipsiSCL8C6-0.5
Spinal cord layer 9 C6ipsiSCL9C6-0.5
Cervical segment 7ipsiCS73
Area X C7ipsiSCL10C7-0.5
Spinal cord layer 5 C7ipsiSCL5C7-0.5
Spinal cord layer 6 C7ipsiSCL6C7-0.5
Spinal cord layer 3 C7ipsiSCL3C7-0.5
Spinal cord layer 4 C7ipsiSCL4C7-0.5
Spinal cord layer 7 C7ipsiSCL7C7-0.5
Spinal cord layer 8 C7ipsiSCL8C7-0.5
Spinal cord layer 9 C7ipsiSCL9C7-0.5
Cervical segment 8ipsiCS83
Area X C8ipsiSCL10C8-0.5
Spinal cord layer 5 C8ipsiSCL5C8-0.5
Spinal cord layer 6 C8ipsiSCL6C8-0.5
Spinal cord layer 3 C8ipsiSCL3C8-0.5
Spinal cord layer 4 C8ipsiSCL4C8-0.5
Spinal cord layer 7 C8ipsiSCL7C8-0.5
Spinal cord layer 8 C8ipsiSCL8C8-0.5
Spinal cord layer 9 C8ipsiSCL9C8-0.5
Thoracal segment 1ipsiT13
Thoracal segment 2ipsiT23
Area X T2ipsiSCL10T2-0.5
Spinal cord layer 5 T2ipsiSCL5T2-0.5
Spinal cord layer 6 T2ipsiSCL6T2-0.5
Spinal cord layer 3 T2ipsiSCL3T2-0.5
Spinal cord layer 4 T2ipsiSCL4T2-0.5
Spinal cord layer 7 T2ipsiSCL7T2-0.5
Spinal cord layer 8 T2ipsiSCL8T2-0.5
Spinal cord layer 9 T2ipsiSCL9T2-0.5
Thoracal segment 3ipsiT33
Area X T3ipsiSCL10T3-0.5
Spinal cord layer 5 T3ipsiSCL5T3-0.5
Spinal cord layer 6 T3ipsiSCL6T3-0.5
Spinal cord layer 3 T3ipsiSCL3T3-0.5
Spinal cord layer 4 T3ipsiSCL4T3-0.5
Spinal cord layer 7 T3ipsiSCL7T3-0.5
Spinal cord layer 8 T3ipsiSCL8T3-0.5
Spinal cord layer 9 T3ipsiSCL9T3-0.5
Thoracal segment 4ipsiT43
Area X T4ipsiSCL10T4-0.5
Spinal cord layer 5 T4ipsiSCL5T4-0.5
Spinal cord layer 6 T4ipsiSCL6T4-0.5
Spinal cord layer 3 T4ipsiSCL3T4-0.5
Spinal cord layer 4 T4ipsiSCL4T4-0.5
Spinal cord layer 7 T4ipsiSCL7T4-0.5
Spinal cord layer 8 T4ipsiSCL8T4-0.5
Spinal cord layer 9 T4ipsiSCL9T4-0.5
Thoracal segment 5ipsiT53
Area X T5ipsiSCL10T5-0.5
Spinal cord layer 5 T5ipsiSCL5T5-0.5
Spinal cord layer 6 T5ipsiSCL6T5-0.5
Spinal cord layer 3 T5ipsiSCL3T5-0.5
Spinal cord layer 4 T5ipsiSCL4T5-0.5
Spinal cord layer 7 T5ipsiSCL7T5-0.5
Spinal cord layer 8 T5ipsiSCL8T5-0.5
Spinal cord layer 9 T5ipsiSCL9T5-0.5
Thoracal segment 6ipsiT63
Area X T6ipsiSCL10T6-0.5
Spinal cord layer 5 T6ipsiSCL5T6-0.5
Spinal cord layer 6 T6ipsiSCL6T6-0.5
Spinal cord layer 3 T6ipsiSCL3T6-0.5
Spinal cord layer 4 T6ipsiSCL4T6-0.5
Spinal cord layer 7 T6ipsiSCL7T6-0.5
Spinal cord layer 8 T6ipsiSCL8T6-0.5
Spinal cord layer 9 T6ipsiSCL9T6-0.5
Thoracal segment 7ipsiT73
Thoracal segment 8ipsiT83
Thoracal segment 9ipsiT93
Thoracal segment 10ipsiT103
Thoracal segment 11ipsiT113
Thoracal segment 12ipsiT123
Thoracal segment 13ipsiT133
Lumbar segment 1ipsiL13
Lumbar segment 2ipsiL23
Lumbar segment 3ipsiL33
Lumbar segment 4ipsiL43
Lumbar segment 5ipsiL53
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL51
Lumbar segment 6ipsiL63
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL61
Sacral segment 1ipsiSa13
Sacral segment 2ipsiSa23
Sacral segment 3ipsiSa33
Sacral segment 4ipsiSa43
MesencephaloncontraMEC0.5
Nucleus of DarkschewitschcontraDk-0.5
Oculomotor nucleuscontra3-0.5
Periaqueductal graycontraPAG-0.5
Dorsolateral periaqueductal graycontraDLPAG3
Lateral periaqueductal graycontraLPAG3
Periaqueductal gray dorsal partcontraPAGd1
Periaqueductal gray lateroventral partcontraPAGLV1
Red nucleuscontraR-0.5
Intercollicular nucleuscontraInCo-0.5
Superior colliculuscontraSC-0.5
Edinger Westphal nucleuscontraEW-0.5
Interstitial nucleus of CajalcontraInC-0.5
Ansiform lobule crus 1contraCrus10
Simple lobulecontraSim0
Cerebellar lobule 2contraCERL21
Cerebellar lobule 3contraCERL31
Cerebellar lobule 1contraCERL11
Cerebellar lobule 4contraCERL41.5
Cerebellar lobule 5contraCERL51.5
Paravermal region of anterior lobecontraPVAnL0
Cerebellar lobule 7contraCERL71.5
Cerebellar lobule 7acontraCERL7a1.5
Cerebellar lobule 7bcontraCERL7b1.5
Cerebellar lobule 8contraCERL81.5
Cerebellar lobule 9contraCERL91.5
Cerebellar lobule 6contraCERL61.5
Cerebellar lobule 6acontraCERL6a1.5
Cerebellar lobule 6bcontraCERL6b1.5
Cerebellar lobule 6ccontraCERL6c1.5
Cerebellar lobule 6dcontraCERL6d1.5
Deep mesencephalic nucleuscontraDpMe1
Cuneiforme nucleuscontraCnF3
Lateral parabrachial nucleus lateral partcontraLPBL0
Parabrachial nucleus central lateral partcontraPBCeL0
Parabrachial nucleus dorsolateral partcontraPBDL0
Parabrachial nucleus superior lateralcontraPBSL0
Lateral reticular nucleuscontraLRt-0.5
Medullary reticular nucleus dorsal partcontraMdDd0.5
Spinal vestibular nucleuscontraSpVe-0.5
Nucleus of the solitary tractcontraSol-0.5
Nucleus of the solitary tract lateral partcontraSolL2
Nucleus of the solitary tract medial partcontraSolM2
Caudal ventrolateral medullacontraCVLM1
Dorsal column nucleicontraDCN0.5
Cuneate nucleuscontraCu-0.5
Nucleus ZcontraZ1
Lateral paragigantocellular nucleuscontraLPGi-0.5
Paragigantocellular reticular nucleus medial partcontraPGiM-0.5
Nucleus of the vertical limb of the diagonal bandcontraVDB-0.5
Medial septal nucleuscontraMS-0.5
Lateral hypothalamic areacontraLH3
Medial division of the hypothalamuscontraMdH1
Dorsal hypothalamic areacontraDA3
Dorsomedial hypothalamic nucleus [Medial zone]contraDM3
Paraventricular hypothalamic nucleuscontraPa3
Suprachiasmatic nucleuscontraSCh3
Supraoptic nucleus [Supraoptic region]contraSO3
Centrolateral thalamic nucleuscontraCL3
Posterior thalamic nuclear groupcontraPo2
Medial part of posterior thalamic nuclear groupcontraPoM-0.5
Posterior thalamic nuclear group triangular partcontraPoT2
Mediodorsal thalamic nucleuscontraMD2
Ventrobasal complexcontraVB3
Ventral posterolateral thalamic nucleus parvicellular partcontraVPLpc-0.5
Posterior intralaminar thalamic nucleuscontraPIL-0.5
Posterior groupcontraPTG3
Pretectal regioncontraPRT-0.5
Anterior pretectal nucleuscontraAPT-0.5
Posterior pretectal nucleuscontraPPT-0.5
Dorsolateral funiculuscontradlft-2
Cervical segment 1contraCS11
Cervical segment 2contraCS21
Cervical segment 3contraCS31
Cervical segment 4contraCS41
Cervical segment 5contraCS51
Cervical segment 6contraCS61
Cervical segment 7contraCS71
Cervical segment 8contraCS81
Thoracal segment 1contraT11
Thoracal segment 2contraT21
Thoracal segment 3contraT31
Thoracal segment 4contraT41
Thoracal segment 5contraT51
Thoracal segment 6contraT61
Thoracal segment 7contraT71
Thoracal segment 8contraT81
Thoracal segment 9contraT91
Thoracal segment 10contraT101
Thoracal segment 11contraT111
Thoracal segment 12contraT121
Thoracal segment 13contraT131
Lumbar segment 1contraL11
Lumbar segment 2contraL21
Lumbar segment 3contraL31
Lumbar segment 4contraL41
Lumbar segment 5contraL51
Lumbar segment 6contraL61
Sacral segment 1contraSa11
Sacral segment 2contraSa21
Sacral segment 3contraSa31
Sacral segment 4contraSa41
Median nerveipsimen1
Tibial nerveipsitibial1
Ulnar nerveipsiuln1
CoripsiOrgsCor-0.5
StomachipsiOrgsStomS-1
Femoral bone marrowipsiOrgSkFemM-0.5
TestisipsiOrgTest1

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
Pedunculopontine tegmental nucleusipsiPPTg3
A5 noradrenaline cellsipsiA52
A7 noradrenaline cellsipsiA73
Locus coeruleusipsiLC3
Caudal part of ventral locus coeruleusipsiLCveca0.5
Ventrolateral reticular formationipsiVLRF-0.5
Dorsolateral pontine reticular formationipsiPRNDL1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi1
Dorsal half of the subnucleus reticularis dorsalisipsiSRDDh-0.5
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd-0.5
Subcoeruleus nucleusipsiSubC3
Raphe magnus nucleusipsiRMg-0.5
Cuneate nucleus dorsal partipsiCuD-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm1
Lateral hypothalamic areaipsiLH1
A11 dopamine cellsipsiA11-0.5
Zona incertaipsiZI-0.5
Zona incerta medial partipsiZIm-0.5
Zona incerta rostromedial partipsiZIrm0
Somatomotoric regionsipsiSMR-0.5
Lateral agranular prefrontal cortexipsiAGl3
Medial agranular prefrontal cortexipsiAGm3
Primary somatosensory cortexipsiS13
Secondary somatosensory cortexipsiS23
Dorsal root ganglion C2ipsiDRGC2-0.5
Dorsal root ganglion C3ipsiDRGC3-0.5
Dorsal root ganglion C4ipsiDRGC4-0.5
Dorsal root ganglion C6ipsiDRGC6-0.5
Dorsal root ganglion C7ipsiDRGC7-0.5
Dorsal root ganglion C8ipsiDRGC8-0.5
Dorsal root ganglion T1ipsiDRGT1-0.5
Area X T2ipsiSCL10T2-0.5
Spinal cord layer 5 T2ipsiSCL5T2-0.5
Spinal cord layer 6 T2ipsiSCL6T2-0.5
Spinal cord layer 3 T2ipsiSCL3T2-0.5
Spinal cord layer 4 T2ipsiSCL4T2-0.5
Spinal cord layer 1 T2ipsiSCL1T2-0.5
Spinal cord layer 2 T2ipsiSCL2T2-0.5
Spinal cord layer 7 T2ipsiSCL7T2-0.5
Spinal cord layer 8 T2ipsiSCL8T2-0.5
Area X T3ipsiSCL10T3-0.5
Spinal cord layer 5 T3ipsiSCL5T3-0.5
Spinal cord layer 6 T3ipsiSCL6T3-0.5
Spinal cord layer 3 T3ipsiSCL3T3-0.5
Spinal cord layer 4 T3ipsiSCL4T3-0.5
Spinal cord layer 1 T3ipsiSCL1T3-0.5
Spinal cord layer 2 T3ipsiSCL2T3-0.5
Spinal cord layer 7 T3ipsiSCL7T3-0.5
Spinal cord layer 8 T3ipsiSCL8T3-0.5
Area X T4ipsiSCL10T4-0.5
Spinal cord layer 5 T4ipsiSCL5T4-0.5
Spinal cord layer 6 T4ipsiSCL6T4-0.5
Spinal cord layer 3 T4ipsiSCL3T4-0.5
Spinal cord layer 4 T4ipsiSCL4T4-0.5
Spinal cord layer 1 T4ipsiSCL1T4-0.5
Spinal cord layer 2 T4ipsiSCL2T4-0.5
Spinal cord layer 7 T4ipsiSCL7T4-0.5
Spinal cord layer 8 T4ipsiSCL8T4-0.5
Area X T5ipsiSCL10T5-0.5
Spinal cord layer 5 T5ipsiSCL5T5-0.5
Spinal cord layer 6 T5ipsiSCL6T5-0.5
Spinal cord layer 3 T5ipsiSCL3T5-0.5
Spinal cord layer 4 T5ipsiSCL4T5-0.5
Spinal cord layer 1 T5ipsiSCL1T5-0.5
Spinal cord layer 2 T5ipsiSCL2T5-0.5
Spinal cord layer 7 T5ipsiSCL7T5-0.5
Spinal cord layer 8 T5ipsiSCL8T5-0.5
Area X T6ipsiSCL10T6-0.5
Spinal cord layer 5 T6ipsiSCL5T6-0.5
Spinal cord layer 6 T6ipsiSCL6T6-0.5
Spinal cord layer 3 T6ipsiSCL3T6-0.5
Spinal cord layer 4 T6ipsiSCL4T6-0.5
Spinal cord layer 1 T6ipsiSCL1T6-0.5
Spinal cord layer 2 T6ipsiSCL2T6-0.5
Spinal cord layer 7 T6ipsiSCL7T6-0.5
Spinal cord layer 8 T6ipsiSCL8T6-0.5
Dorsal root ganglion L2ipsiDRGL2-0.5
Pedunculopontine tegmental nucleuscontraPPTg3
A7 noradrenaline cellscontraA70.5
Locus coeruleuscontraLC3
Caudal part of ventral locus coeruleuscontraLCveca0.5
Cuneiforme nucleuscontraCnF-2
Gigantocellular reticular nucleuscontraGi0.5
Zona incerta medial partcontraZIm-0.5
Dorsolateral funiculuscontradlft-2
Frontal cortex area 2contraFr23
Parietal association cortexcontraPtA0.5
Insular cortexcontraICX0.5
Prefrontal cortexcontraPFC0.5
Lateral agranular prefrontal cortexcontraAGl3
Primary somatosensory cortexcontraS13
Secondary somatosensory cortexcontraS23
Secondary visual cortexcontraV20.5
Greater splanchnic nerveipsiAutoNGS1
Greater occipital nerveipsiPNSgo-0.5
Median nerveipsimen-0.5
Superficial cutaneous part of the radial nerveipsiradsc2
Ulnar nerveipsiuln-0.5
Forelimb extensor digitorum communisipsiMuscFoEDC2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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