University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Trachea side right


Abbreviation
OrgsTras
Color       
Superior regionsTrachea

SynonymsAbbr.Language
Trachea sideOrgsTrasEng

SubregionsSide
Extrathoracic trachearight
Trachea lateral wallright
Trachea ventral wallright
Trachea wallright
Tracheal adventitiaright

Output to

NameSideAbbr.WeightDetails
Locus coeruleuscontraLC3
Trapezoid bodycontratz3
Caudal commissural nucleus of the solitary tractcontraSolCC3
Rostral part of the ventrolateral nucleus of the solitary tractcontraSolVLR3
Rostromedial nucleus of the solitary tractcontraSolRM3
Inferior olivecontraIO4
Anterior hypothalamic areacontraAHA-0.5
Zona incertacontraZI4
Cingulate cortexcontraCg2
Interstitial nucleus of medial longitudinal fasciculusipsiIMLF2
Periaqueductal grayipsiPAG-10
Lateral periaqueductal grayipsiLPAG2
Ventrolateral periaqueductal grayipsiVLPAG3
Inferior colliculusipsiICOL4
Tegmental areaipsiTGA4
Locus coeruleusipsiLC-10
Prepositus nucleusipsiPr2
Intermediate reticular nucleusipsiIRt4
Pontine reticular nucleusipsiPRN2
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB3
Parabrachial nucleus medialipsiPBnMe3
Gigantocellular reticular nucleusipsiGi4
Lateral reticular nucleusipsiLRt4
Medullary reticular nucleusipsiMdD4
Parvicellular reticular nucleusipsiPCRt4
Subcoeruleus nucleusipsiSubC4
Facial nucleusipsi72
Paratrigeminal nucleusipsiPa5-10
Motor trigeminal nucleusipsiMo52
Principal sensory trigeminal nucleusipsiPr52
Principal sensory trigeminal nucleus dorsomedial partipsiPr5DM2
Spinal trigeminal nucleusipsiSp5nc4
Spinal trigeminal tractipsisp5-10
Peritrigeminal zoneipsiP52
Nucleus of the solitary tractipsiSol4
Caudal commissural nucleus of the solitary tractipsiSolCC3
Nucleus of the solitary tract interstitial partipsiSoli3
Rostral part of the ventrolateral nucleus of the solitary tractipsiSolVLR3
Rostromedial nucleus of the solitary tractipsiSolRM3
Dorsal motor nucleus of vagusipsi10-0.5
Median raphe nucleusipsiMnR1
Raphe interpositus nucleusipsiRIP2
Raphe magnus nucleusipsiRMg2
Raphe obscurus nucleusipsiROb2
Rostral ventrolateral medullaipsiRVLM2
External cuneate nucleusipsiECu1
Rostral preolivary regionipsiRPON2
Medial superior oliveipsiMSO2
Dorsal paragigantocellular nucleusipsiDPGi4
Lateral paragigantocellular nucleusipsiLPGi4
Medial septal nucleusipsiMS2
Lateral preoptic areaipsiLPO1
Dorsomedial hypothalamic nucleusipsiDMHy4
Lateral hypothalamic areaipsiLH3
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM-10
Posterior hypothalamic areaipsiPHA1
Paraventricular hypothalamic nucleus ventral part [Periventricular zone anterior region]ipsiPaV3
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP3
Supraoptic nucleus [Supraoptic region]ipsiSO2
Parafascicular thalamic nucleusipsiPF2
Posterior thalamic nuclear groupipsiPo-10
Mediodorsal thalamic nucleusipsiMD2
Submedius thalamic nucleusipsiSub3
Paraventricular thalamic nucleusipsiPV2
Ventrolateral thalamic nucleusipsiVL2
Ventral posterior thalamic nucleus parvicellular partipsiVPPC2
Ventral posterolateral thalamic nucleusipsiVPL2
Ventral posteromedial thalamic nucleusipsiVPM4
Ventromedial thalamic nucleusipsiVM3
Posterior groupipsiPTG2
Reticular thalamic nucleusipsiRt4
Zona incertaipsiZI-10
Medial habenular nucleusipsiMHb2
Anterior pretectal nucleusipsiAPT2
Lateral lemniscusipsill3
Medial lemniscusipsiml-10
Amygdaloid complexipsiAC-10
Bed nucleus of the stria terminalisipsiBST3
Central amygdaloid nucleusipsiCe2
Amygdalopiriform transition areaipsiAPir2
Anterior amygdaloid areaipsiAA2
Globus pallidusipsiGP-10
Lateral globus pallidusipsiLGP2
Ventral pallidumipsiVP2
Accumbens nucleus coreipsiAcbC2
Caudate putamenipsiCPu4
Dentate gyrusipsiDG2
Cingulate cortexipsiCg-10
Prelimbic cortexipsiPrL2
Agranular insular cortexipsiAI2
Agranular insular cortex rostral partipsiRAIC-10
Dysgranular insular cortexipsiDI-10
Granular insular cortexipsiGI-10
Lateral agranular prefrontal cortexipsiAGl-10
Medial agranular prefrontal cortexipsiAGm2
Primary somatosensory cortexipsiS12
Secondary somatosensory cortexipsiS22
Lateral orbital cortexipsiLO2
Lateral septal nucleusipsiLS2
Dorsal root ganglion C2ipsiDRGC2-0.5
Dorsal root ganglion C3ipsiDRGC3-0.5
Dorsal root ganglion C4ipsiDRGC4-0.5
Dorsal root ganglion C5ipsiDRGC5-0.5
Dorsal root ganglion C6ipsiDRGC6-0.5
Dorsal root ganglion C7ipsiDRGC7-0.5
Dorsal root ganglion C8ipsiDRGC8-0.5
Dorsal root gangliaipsiDRG1
Stellate ganglionipsiAutoSteG2
Superior cervical ganglionipsiAutoSCeG1
Jugular ganglionipsiAutoJG-0.5
Sensory vagal gangliaipsiAutoSVG1
Petrosal ganglionipsiAutoPetroG-0.5
Nodose ganglionipsiAutoNoG-0.5

Input from

NameSideAbbr.WeightDetails
Medullary reticular nucleus ventral partcontraMdV-0.5
Ambiguus nucleus compact partcontraAmbC2
Ambiguus nucleus dorsal divisioncontraAMBd1
Ambiguus nucleus external formationcontraAmbEx1.5
Ambiguus nucleus ventral divisioncontraAMBv1
Ambiguus nucleus medial partcontraAmbMe1.5
Facial nucleus caudal partcontra7c-0.5
Nucleus of the solitary tract medial part rostral zonecontraNTSm-r0.5
Dorsal motor nucleus of vaguscontra100.5
Ventral respiratory group caudal partcontraVCReG-0.5
Spinal cord layer 9 C1contraSCL9C11
Spinal cord layer 9 C2contraSCL9C21
Spinal cord layer 9 C3contraSCL9C31
Spinal cord layer 9 C4contraSCL9C41
Spinal cord layer 9 C5contraSCL9C51
Spinal cord layer 9 C6contraSCL9C61
Medullary reticular nucleusipsiMdD-10
Medullary reticular nucleus ventral partipsiMdV-0.5
Ambiguus nucleusipsiAmb0
Ambiguus nucleus compact partipsiAmbC2
Ambiguus nucleus dorsal divisionipsiAMBd2
Ambiguus nucleus external formationipsiAmbEx1.5
Airway vagal preganglionic neuronipsiAVPN-0.5
Ambiguus nucleus ventral divisionipsiAMBv2
Ambiguus nucleus medial partipsiAmbMe3
Facial nucleus caudal partipsi7c-0.5
Nucleus of the solitary tract medial part rostral zoneipsiNTSm-r1
Dorsal motor nucleus of vagusipsi100.5
Raphe magnus nucleusipsiRMg-10
Ventral respiratory group caudal partipsiVCReG-0.5
Ventromedial medulla oblongataipsiMeObvm-10
Intermediomedial cell column C1ipsiIMMC11
Spinal cord layer 7 C1ipsiSCL7C11
Spinal cord layer 9 C1ipsiSCL9C13
Spinal cord layer 9 C2ipsiSCL9C23
Spinal cord layer 9 C3ipsiSCL9C32
Spinal cord layer 9 C4ipsiSCL9C42
Spinal cord layer 9 C5ipsiSCL9C52
Spinal cord layer 9 C6ipsiSCL9C62
Cervical segment 7ipsiCS71
Nodose ganglionipsiAutoNoG-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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