University of Rostock

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Rat connectome



Spinal cord layer 9 L1 left


Abbreviation
SCL9L1
Color       
Superior regionsVentral horn L1

SynonymsAbbr.Language
Spinal cord layer 9 L1SCL9L1Eng

Output to

NameSideAbbr.WeightDetails
Lateral periaqueductal grayipsiLPAG1
CerebellumipsiCERE-0.5
Posterior lobe of the cerebellumipsiCERCPL-0.5
Paramedian lobuleipsiPM3
Lateral portion of the paramedian lobuleipsiLaPM3
Anterior lobeipsiAnL3
Caudal part of cerebellumipsiCERCca3
Cerebellar lobule 7ipsiCERL73
Cerebellar lobule 8ipsiCERL83
Gigantocellular reticular nucleusipsiGi-0.5
Lateral paragigantocellular nucleusipsiLPGi-0.5
Ventrobasal complexipsiVB1
Ventral spinocerebellar tractipsivsc-2
Anterior commissureipsiac-2
Cervical segment 5ipsiCS50.5
Cervical segment 6ipsiCS60.5
Spinal cord layer 9 L2ipsiSCL9L23
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL53
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL63
Paramedian lobulecontraPM3
Anterior lobecontraAnL3
Caudal part of cerebellumcontraCERCca3
Superior cerebellar pedunclecontrasucep-2
Gigantocellular reticular nucleuscontraGi-0.5
Lateral paragigantocellular nucleuscontraLPGi-0.5
Lateral funiculuscontralf-2
Anterior commissurecontraac-2
Ventromedial gray substance at the level of the lumbal segment 4contraL4vmg3
Genitofemoral nerveipsigfem-0.5
Sciatic nerveipsisci0
Tibial nerveipsitibial-0.5
StomachipsiOrgsStomS-1
Oblique internal muscleipsiMuscOBLint3
Inguinal musclesipsiMuscHiig-0.5
Cremaster muscleipsiMuscCrem3
Ischiocavernosus muscleipsiMuscicav-10
Transversospinal muscleipsiMuscTraSpi3
Transversal abdominal muscleipsiMuscTransAbd3
Medial longissimus muscleipsiMuscMeLo3
Lumbar longissimus muscleipsiMuscLuLo3

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
Red nucleusipsiR2
Ventrolateral tegmental areaipsiVLTg1.5
Laterodorsal tegmental nucleusipsiLDTg1
Dorsal tegmental nucleus lateral partipsiDLTN2
Interstitial nucleus of CajalipsiInC1.5
A5 noradrenaline cellsipsiA52
Locus coeruleusipsiLC3
Caudal part of ventral locus coeruleusipsiLCveca3
Reticular systemipsiRF3
Medial reticular formationipsiRFm-0.5
Paramedian reticular nucleusipsiPMn3
Ventrolateral reticular formationipsiVLRF-0.5
Pontine reticular nucleusipsiPRN3
Dorsolateral pontine reticular formationipsiPRNDL1
Pontine reticular nucleus oral partipsiPnO2
Pontine reticular nucleus oral part caudal partipsiPnOc2.5
Pontine reticular nucleus oral part dorsolateral partipsiPnODL2.5
Pontine reticular nucleus oral part lateral partipsiPnOL2.5
Pontine reticular nucleus caudal partipsiPNC-0.5
Pontine reticular nucleus caudal part ventrolateral partipsiPNCvL2.5
Cuneiforme nucleusipsiCnF2.5
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi3
Gigantocellular reticular nucleus dorsal partipsiGidp3
Gigantocellular reticular nucleus medial partipsiGiM-0.5
Gigantocellular reticular nucleus rostral partipsiGiRo-0.5
Lateral reticular nucleusipsiLRt1
Lateral reticular nucleus rostral partipsiLRtr2
Medial subnucleus reticularis ventralis caudal partipsiMSRVc1
Medial subnucleus reticularis ventralis rostral partipsiMSRVr1
Medullary reticular nucleus lateral partipsiMdL1
Subcoeruleus nucleusipsiSubC3
Spinal trigeminal nucleus interpolar partipsiSp5I2
Raphe magnus nucleusipsiRMg2
Raphe obscurus nucleusipsiROb3
Raphe pallidus nucleusipsiRPa3
Lateral paragigantocellular nucleusipsiLPGi-0.5
Retroambiguus nucleusipsiRAmb1
Rostral part of the ventromedial medulla oblongataipsiRMeObvm1
Lateral hypothalamic areaipsiLH1
Paraventricular hypothalamic nucleusipsiPa0.5
Zona incerta rostromedial partipsiZIrm0
Lateral agranular prefrontal cortexipsiAGl1
Medial agranular prefrontal cortexipsiAGm1
Primary somatosensory cortexipsiS11
Secondary somatosensory cortexipsiS21
Somatomotoric regions layer 5ipsiSMRL53
Area X C2ipsiSCL10C22
Spinal cord layer 5 C2ipsiSCL5C21
Spinal cord layer 6 C2ipsiSCL6C21
Spinal cord layer 4 C2ipsiSCL4C21
Spinal cord layer 7 C2ipsiSCL7C23
Spinal cord layer 8 C2ipsiSCL8C23
Spinal cord layer 9 C2ipsiSCL9C22
Area X C3ipsiSCL10C32
Spinal cord layer 5 C3ipsiSCL5C31
Spinal cord layer 6 C3ipsiSCL6C31
Spinal cord layer 4 C3ipsiSCL4C31
Spinal cord layer 7 C3ipsiSCL7C33
Spinal cord layer 8 C3ipsiSCL8C33
Spinal cord layer 9 C3ipsiSCL9C32
Area X C4ipsiSCL10C42
Spinal cord layer 5 C4ipsiSCL5C41
Spinal cord layer 6 C4ipsiSCL6C41
Spinal cord layer 4 C4ipsiSCL4C41
Spinal cord layer 7 C4ipsiSCL7C43
Spinal cord layer 8 C4ipsiSCL8C43
Spinal cord layer 9 C4ipsiSCL9C42
Area X C5ipsiSCL10C52
Spinal cord layer 5 C5ipsiSCL5C51
Spinal cord layer 6 C5ipsiSCL6C51
Spinal cord layer 4 C5ipsiSCL4C51
Spinal cord layer 7 C5ipsiSCL7C53
Spinal cord layer 8 C5ipsiSCL8C53
Spinal cord layer 9 C5ipsiSCL9C52
Area X C6ipsiSCL10C62
Spinal cord layer 5 C6ipsiSCL5C61
Spinal cord layer 6 C6ipsiSCL6C61
Spinal cord layer 4 C6ipsiSCL4C61
Spinal cord layer 7 C6ipsiSCL7C63
Spinal cord layer 8 C6ipsiSCL8C63
Spinal cord layer 9 C6ipsiSCL9C62
Area X C7ipsiSCL10C72
Spinal cord layer 5 C7ipsiSCL5C71
Spinal cord layer 6 C7ipsiSCL6C71
Spinal cord layer 4 C7ipsiSCL4C71
Spinal cord layer 7 C7ipsiSCL7C73
Spinal cord layer 8 C7ipsiSCL8C73
Spinal cord layer 9 C7ipsiSCL9C72
Area X C8ipsiSCL10C82
Spinal cord layer 5 C8ipsiSCL5C81
Spinal cord layer 6 C8ipsiSCL6C81
Spinal cord layer 4 C8ipsiSCL4C81
Spinal cord layer 7 C8ipsiSCL7C83
Spinal cord layer 8 C8ipsiSCL8C83
Spinal cord layer 9 C8ipsiSCL9C82
Area X T9ipsiSCL10T9-0.5
Spinal cord layer 5 T9ipsiSCL5T9-0.5
Spinal cord layer 6 T9ipsiSCL6T9-0.5
Spinal cord layer 3 T9ipsiSCL3T9-0.5
Spinal cord layer 4 T9ipsiSCL4T9-0.5
Spinal cord layer 1 T9ipsiSCL1T9-0.5
Spinal cord layer 2 T9ipsiSCL2T9-0.5
Spinal cord layer 7 T9ipsiSCL7T9-0.5
Spinal cord layer 8 T9ipsiSCL8T9-0.5
Area X T10ipsiSCL10T10-0.5
Spinal cord layer 5 T10ipsiSCL5T10-0.5
Spinal cord layer 6 T10ipsiSCL6T10-0.5
Spinal cord layer 3 T10ipsiSCL3T10-0.5
Spinal cord layer 4 T10ipsiSCL4T10-0.5
Spinal cord layer 1 T10ipsiSCL1T10-0.5
Spinal cord layer 2 T10ipsiSCL2T10-0.5
Spinal cord layer 7 T10ipsiSCL7T10-0.5
Spinal cord layer 8 T10ipsiSCL8T10-0.5
Area X T11ipsiSCL10T11-0.5
Spinal cord layer 5 T11ipsiSCL5T11-0.5
Spinal cord layer 6 T11ipsiSCL6T11-0.5
Spinal cord layer 3 T11ipsiSCL3T11-0.5
Spinal cord layer 4 T11ipsiSCL4T11-0.5
Spinal cord layer 1 T11ipsiSCL1T11-0.5
Spinal cord layer 2 T11ipsiSCL2T11-0.5
Spinal cord layer 7 T11ipsiSCL7T11-0.5
Spinal cord layer 8 T11ipsiSCL8T11-0.5
Area X T12ipsiSCL10T12-0.5
Spinal cord layer 5 T12ipsiSCL5T12-0.5
Spinal cord layer 6 T12ipsiSCL6T12-0.5
Spinal cord layer 3 T12ipsiSCL3T12-0.5
Spinal cord layer 4 T12ipsiSCL4T12-0.5
Spinal cord layer 1 T12ipsiSCL1T12-0.5
Spinal cord layer 2 T12ipsiSCL2T12-0.5
Spinal cord layer 7 T12ipsiSCL7T12-0.5
Spinal cord layer 8 T12ipsiSCL8T12-0.5
Area X T13ipsiSCL10T13-0.5
Spinal cord layer 5 T13ipsiSCL5T13-0.5
Spinal cord layer 6 T13ipsiSCL6T13-0.5
Spinal cord layer 3 T13ipsiSCL3T13-0.5
Spinal cord layer 4 T13ipsiSCL4T13-0.5
Spinal cord layer 1 T13ipsiSCL1T13-0.5
Spinal cord layer 2 T13ipsiSCL2T13-0.5
Spinal cord layer 7 T13ipsiSCL7T13-0.5
Spinal cord layer 8 T13ipsiSCL8T13-0.5
Dorsal root ganglion L1ipsiDRGL13
Dorsal root ganglion L2ipsiDRGL23
Dorsal root ganglion L3ipsiDRGL31
Dorsal root ganglion L4ipsiDRGL41
Dorsal root ganglion L5ipsiDRGL51
Dorsal root ganglion L6ipsiDRGL60
Locus coeruleuscontraLC0.5
Caudal part of ventral locus coeruleuscontraLCveca0.5
Reticular systemcontraRF3
Medial reticular formationcontraRFm-0.5
Paramedian reticular nucleuscontraPMn3
Pontine reticular nucleus oral partcontraPnO0.5
Gigantocellular reticular nucleuscontraGi1
Gigantocellular reticular nucleus medial partcontraGiM-0.5
Raphe obscurus nucleuscontraROb3
Lateral paragigantocellular nucleuscontraLPGi-0.5
Somatomotoric regions layer 5contraSMRL53
Area X C2contraSCL10C21
Spinal cord layer 5 C2contraSCL5C20.5
Spinal cord layer 6 C2contraSCL6C20.5
Spinal cord layer 4 C2contraSCL4C20.5
Spinal cord layer 7 C2contraSCL7C22
Spinal cord layer 8 C2contraSCL8C22
Spinal cord layer 9 C2contraSCL9C21
Area X C3contraSCL10C31
Spinal cord layer 5 C3contraSCL5C30.5
Spinal cord layer 6 C3contraSCL6C30.5
Spinal cord layer 4 C3contraSCL4C30.5
Spinal cord layer 7 C3contraSCL7C32
Spinal cord layer 8 C3contraSCL8C32
Spinal cord layer 9 C3contraSCL9C31
Area X C4contraSCL10C41
Spinal cord layer 5 C4contraSCL5C40.5
Spinal cord layer 6 C4contraSCL6C40.5
Spinal cord layer 4 C4contraSCL4C40.5
Spinal cord layer 7 C4contraSCL7C42
Spinal cord layer 8 C4contraSCL8C42
Spinal cord layer 9 C4contraSCL9C41
Area X C5contraSCL10C51
Spinal cord layer 5 C5contraSCL5C50.5
Spinal cord layer 6 C5contraSCL6C50.5
Spinal cord layer 4 C5contraSCL4C50.5
Spinal cord layer 7 C5contraSCL7C52
Spinal cord layer 8 C5contraSCL8C52
Spinal cord layer 9 C5contraSCL9C51
Area X C6contraSCL10C61
Spinal cord layer 5 C6contraSCL5C60.5
Spinal cord layer 6 C6contraSCL6C60.5
Spinal cord layer 4 C6contraSCL4C60.5
Spinal cord layer 7 C6contraSCL7C62
Spinal cord layer 8 C6contraSCL8C62
Spinal cord layer 9 C6contraSCL9C61
Area X C7contraSCL10C71
Spinal cord layer 5 C7contraSCL5C70.5
Spinal cord layer 6 C7contraSCL6C70.5
Spinal cord layer 4 C7contraSCL4C70.5
Spinal cord layer 7 C7contraSCL7C72
Spinal cord layer 8 C7contraSCL8C72
Spinal cord layer 9 C7contraSCL9C71
Area X C8contraSCL10C81
Spinal cord layer 5 C8contraSCL5C80.5
Spinal cord layer 6 C8contraSCL6C80.5
Spinal cord layer 4 C8contraSCL4C80.5
Spinal cord layer 7 C8contraSCL7C82
Spinal cord layer 8 C8contraSCL8C82
Spinal cord layer 9 C8contraSCL9C81
Dorsal root ganglion L1contraDRGL12
Ventromedial nucleus of lumbar segment 1contraVML13

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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