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Rat connectome



Spinal cord layer 3 T1 left


Abbreviation
SCL3T1
Color       
Superior regionsNucleus proprius T1

SynonymsAbbr.Language
Spinal cord layer 3 T1SCL3T1Eng

Output to

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG0.5
Dorsolateral periaqueductal grayipsiDLPAG1
Lateral periaqueductal grayipsiLPAG1
Periaqueductal gray lateroventral partipsiPAGLV0.5
Cerebellar lobule 4ipsiCERL40
Cerebellar lobule 5ipsiCERL51
Cerebellar lobule 7ipsiCERL71
Cerebellar lobule 7aipsiCERL7a1
Cerebellar lobule 7bipsiCERL7b1
Cerebellar lobule 8ipsiCERL81
Cerebellar lobule 9ipsiCERL91
Cerebellar lobule 6ipsiCERL61
Cerebellar lobule 6aipsiCERL6a1
Cerebellar lobule 6bipsiCERL6b1
Cerebellar lobule 6cipsiCERL6c1
Cerebellar lobule 6dipsiCERL6d1
Pontine medullary junctionipsiPMJ-0.5
Lateral parabrachial nucleusipsiLPB0.5
Lateral parabrachial nucleus internal partipsiLPBI2
Lateral parabrachial nucleus lateral partipsiLPBL0
Parabrachial nucleus central lateral partipsiPBCeL1
Parabrachial nucleus dorsolateral partipsiPBDL1
Parabrachial nucleus superior lateralipsiPBSL1
Gigantocellular reticular nucleusipsiGi2
Lateral reticular nucleusipsiLRt2
Lateral reticular nucleus lateral partipsiLRtL1
Subnucleus reticularis dorsalisipsiSRD2
Medullary reticular nucleus dorsal partipsiMdDd2
Nucleus of the solitary tract lateral partipsiSolL2
Caudal ventrolateral medullaipsiCVLM0.5
Dorsal column nucleiipsiDCN2
Cuneate nucleusipsiCu2
Gracile nucleus principal partipsiGr-0.5
Lateral paragigantocellular nucleusipsiLPGi2
Dorsal regionipsiDHR-0.5
Lateral hypothalamic areaipsiLH1.5
Dorsal hypothalamic areaipsiDA1.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1.5
Posterior hypothalamic areaipsiPHA-0.5
Paraventricular hypothalamic nucleusipsiPa1.5
Suprachiasmatic nucleusipsiSCh1.5
Supraoptic nucleus [Supraoptic region]ipsiSO1.5
ThalamusipsiT0.5
Centrolateral thalamic nucleusipsiCL1
Posterior thalamic nuclear group triangular partipsiPoT0.5
Ventrobasal complexipsiVB1
Posterior groupipsiPTG1
TelencephalonipsiTEL-0.5
Amygdaloid complexipsiAC-0.5
Basal gangliaipsiBG-0.5
Infralimbic cortexipsiIL-0.5
Medial orbital cortexipsiMO-0.5
Cervical segment 1ipsiCS11
Lateral cervical nucleus C1ipsiLatCC1-0.5
Cervical segment 2ipsiCS21
Lateral cervical nucleus C2ipsiLatCC2-0.5
Cervical segment 3ipsiCS31
Lateral cervical nucleus C3ipsiLatCC3-0.5
Cervical segment 4ipsiCS41
Lateral cervical nucleus C4ipsiLatCC4-0.5
Area X C4ipsiSCL10C4-0.5
Spinal cord layer 5 C4ipsiSCL5C4-0.5
Spinal cord layer 6 C4ipsiSCL6C4-0.5
Spinal cord layer 3 C4ipsiSCL3C4-0.5
Spinal cord layer 4 C4ipsiSCL4C4-0.5
Spinal cord layer 7 C4ipsiSCL7C4-0.5
Spinal cord layer 8 C4ipsiSCL8C4-0.5
Spinal cord layer 9 C4ipsiSCL9C4-0.5
Cervical segment 5ipsiCS51
Area X C5ipsiSCL10C5-0.5
Spinal cord layer 5 C5ipsiSCL5C5-0.5
Spinal cord layer 6 C5ipsiSCL6C5-0.5
Spinal cord layer 3 C5ipsiSCL3C5-0.5
Spinal cord layer 4 C5ipsiSCL4C5-0.5
Spinal cord layer 7 C5ipsiSCL7C5-0.5
Spinal cord layer 8 C5ipsiSCL8C5-0.5
Spinal cord layer 9 C5ipsiSCL9C5-0.5
Cervical segment 6ipsiCS61
Area X C6ipsiSCL10C6-0.5
Spinal cord layer 5 C6ipsiSCL5C6-0.5
Spinal cord layer 6 C6ipsiSCL6C6-0.5
Spinal cord layer 3 C6ipsiSCL3C6-0.5
Spinal cord layer 4 C6ipsiSCL4C6-0.5
Spinal cord layer 7 C6ipsiSCL7C6-0.5
Spinal cord layer 8 C6ipsiSCL8C6-0.5
Spinal cord layer 9 C6ipsiSCL9C6-0.5
Cervical segment 7ipsiCS71
Area X C7ipsiSCL10C7-0.5
Spinal cord layer 5 C7ipsiSCL5C7-0.5
Spinal cord layer 6 C7ipsiSCL6C7-0.5
Spinal cord layer 3 C7ipsiSCL3C7-0.5
Spinal cord layer 4 C7ipsiSCL4C7-0.5
Spinal cord layer 7 C7ipsiSCL7C7-0.5
Spinal cord layer 8 C7ipsiSCL8C7-0.5
Spinal cord layer 9 C7ipsiSCL9C7-0.5
Cervical segment 8ipsiCS81
Area X C8ipsiSCL10C8-0.5
Spinal cord layer 5 C8ipsiSCL5C8-0.5
Spinal cord layer 6 C8ipsiSCL6C8-0.5
Spinal cord layer 3 C8ipsiSCL3C8-0.5
Spinal cord layer 4 C8ipsiSCL4C8-0.5
Spinal cord layer 7 C8ipsiSCL7C8-0.5
Spinal cord layer 8 C8ipsiSCL8C8-0.5
Spinal cord layer 9 C8ipsiSCL9C8-0.5
Thoracal segment 1ipsiT11
Thoracal segment 2ipsiT21
Area X T2ipsiSCL10T2-0.5
Spinal cord layer 5 T2ipsiSCL5T2-0.5
Spinal cord layer 6 T2ipsiSCL6T2-0.5
Spinal cord layer 3 T2ipsiSCL3T2-0.5
Spinal cord layer 4 T2ipsiSCL4T2-0.5
Spinal cord layer 7 T2ipsiSCL7T2-0.5
Spinal cord layer 8 T2ipsiSCL8T2-0.5
Spinal cord layer 9 T2ipsiSCL9T2-0.5
Thoracal segment 3ipsiT31
Area X T3ipsiSCL10T3-0.5
Spinal cord layer 5 T3ipsiSCL5T3-0.5
Spinal cord layer 6 T3ipsiSCL6T3-0.5
Spinal cord layer 3 T3ipsiSCL3T3-0.5
Spinal cord layer 4 T3ipsiSCL4T3-0.5
Spinal cord layer 7 T3ipsiSCL7T3-0.5
Spinal cord layer 8 T3ipsiSCL8T3-0.5
Spinal cord layer 9 T3ipsiSCL9T3-0.5
Thoracal segment 4ipsiT41
Area X T4ipsiSCL10T4-0.5
Spinal cord layer 5 T4ipsiSCL5T4-0.5
Spinal cord layer 6 T4ipsiSCL6T4-0.5
Spinal cord layer 3 T4ipsiSCL3T4-0.5
Spinal cord layer 4 T4ipsiSCL4T4-0.5
Spinal cord layer 7 T4ipsiSCL7T4-0.5
Spinal cord layer 8 T4ipsiSCL8T4-0.5
Spinal cord layer 9 T4ipsiSCL9T4-0.5
Thoracal segment 5ipsiT51
Area X T5ipsiSCL10T5-0.5
Spinal cord layer 5 T5ipsiSCL5T5-0.5
Spinal cord layer 6 T5ipsiSCL6T5-0.5
Spinal cord layer 3 T5ipsiSCL3T5-0.5
Spinal cord layer 4 T5ipsiSCL4T5-0.5
Spinal cord layer 7 T5ipsiSCL7T5-0.5
Spinal cord layer 8 T5ipsiSCL8T5-0.5
Spinal cord layer 9 T5ipsiSCL9T5-0.5
Thoracal segment 6ipsiT61
Area X T6ipsiSCL10T6-0.5
Spinal cord layer 5 T6ipsiSCL5T6-0.5
Spinal cord layer 6 T6ipsiSCL6T6-0.5
Spinal cord layer 3 T6ipsiSCL3T6-0.5
Spinal cord layer 4 T6ipsiSCL4T6-0.5
Spinal cord layer 7 T6ipsiSCL7T6-0.5
Spinal cord layer 8 T6ipsiSCL8T6-0.5
Spinal cord layer 9 T6ipsiSCL9T6-0.5
Thoracal segment 7ipsiT71
Thoracal segment 8ipsiT81
Thoracal segment 9ipsiT91
Thoracal segment 10ipsiT101
Thoracal segment 11ipsiT111
Thoracal segment 12ipsiT121
Thoracal segment 13ipsiT131
Lumbar segment 1ipsiL11
Lumbar segment 2ipsiL21
Lumbar segment 3ipsiL31
Lumbar segment 4ipsiL41
Lumbar segment 5ipsiL51
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL50
Lumbar segment 6ipsiL61
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL60
Sacral segment 1ipsiSa11
Sacral segment 2ipsiSa21
Sacral segment 3ipsiSa31
Sacral segment 4ipsiSa41
MesencephaloncontraMEC0.5
Nucleus of DarkschewitschcontraDk-0.5
Oculomotor nucleuscontra3-0.5
Periaqueductal graycontraPAG3
Dorsolateral periaqueductal graycontraDLPAG3
Lateral periaqueductal graycontraLPAG3
Periaqueductal gray dorsal partcontraPAGd1
Periaqueductal gray laterodorsal partcontraPAGLD1
Periaqueductal gray lateroventral partcontraPAGLV1
Ventrolateral periaqueductal graycontraVLPAG2
Intercollicular nucleuscontraInCo-0.5
Superior colliculuscontraSC-0.5
Superior colliculus intermediate layerscontraSCi-0.5
Superior colliculus deep layerscontraSCd-0.5
Edinger Westphal nucleuscontraEW-0.5
Interstitial nucleus of CajalcontraInC-0.5
Cerebellar lobule 4contraCERL40
Cerebellar lobule 5contraCERL51.5
Cerebellar lobule 7contraCERL71.5
Cerebellar lobule 7acontraCERL7a1.5
Cerebellar lobule 7bcontraCERL7b1.5
Cerebellar lobule 8contraCERL81.5
Cerebellar lobule 9contraCERL91.5
Cerebellar lobule 6contraCERL61.5
Cerebellar lobule 6acontraCERL6a1.5
Cerebellar lobule 6bcontraCERL6b1.5
Cerebellar lobule 6ccontraCERL6c1.5
Cerebellar lobule 6dcontraCERL6d1.5
Deep mesencephalic nucleuscontraDpMe1
Cuneiforme nucleuscontraCnF3
Koelliker Fuse nucleuscontraKF0.5
Lateral parabrachial nucleuscontraLPB3
Lateral parabrachial nucleus crescent partcontraLPBCr2
Lateral parabrachial nucleus dorsolateral partcontraLPBdL3
Lateral parabrachial nucleus external part inner portioncontraLPBEip1
Lateral parabrachial nucleus external part outer portioncontraLPBEop2
Lateral parabrachial nucleus internal partcontraLPBI0
Lateral parabrachial nucleus lateral partcontraLPBL0
Lateral parabrachial nucleus superior partcontraLPBS2
Parabrachial nucleus central lateral partcontraPBCeL0.5
Parabrachial nucleus dorsolateral partcontraPBDL0
Parabrachial nucleus medialcontraPBnMe0
Medial parabrachial nucleus external partcontraMPBE1
Parabrachial nucleus superior lateralcontraPBSL0
Lateral reticular nucleuscontraLRt0.5
Lateral reticular nucleus lateral partcontraLRtL1
Medullary reticular nucleus dorsal partcontraMdDd0.5
Nucleus of the solitary tract lateral partcontraSolL0.5
Caudal ventrolateral medullacontraCVLM3
Dorsal column nucleicontraDCN0.5
Lateral hypothalamic areacontraLH3
Dorsal hypothalamic areacontraDA3
Dorsomedial hypothalamic nucleus [Medial zone]contraDM3
Paraventricular hypothalamic nucleuscontraPa3
Suprachiasmatic nucleuscontraSCh3
Supraoptic nucleus [Supraoptic region]contraSO3
ThalamuscontraT3
Centrolateral thalamic nucleuscontraCL3
Posterior thalamic nuclear groupcontraPo2
Medial part of posterior thalamic nuclear groupcontraPoM-0.5
Posterior thalamic nuclear group triangular partcontraPoT3
Mediodorsal thalamic nucleuscontraMD2
Ventrobasal complexcontraVB3
Ventral posterolateral thalamic nucleus parvicellular partcontraVPLpc-0.5
Posterior groupcontraPTG3
Pretectal regioncontraPRT-0.5
Dorsolateral funiculuscontradlft-2
Lateral funiculuscontralf-2
Cervical segment 1contraCS11
Cervical segment 2contraCS21
Cervical segment 3contraCS31
Cervical segment 4contraCS41
Cervical segment 5contraCS51
Cervical segment 6contraCS61
Cervical segment 7contraCS71
Cervical segment 8contraCS81
Thoracal segment 1contraT11
Thoracal segment 2contraT21
Thoracal segment 3contraT31
Thoracal segment 4contraT41
Thoracal segment 5contraT51
Thoracal segment 6contraT61
Thoracal segment 7contraT71
Thoracal segment 8contraT81
Thoracal segment 9contraT91
Thoracal segment 10contraT101
Thoracal segment 11contraT111
Thoracal segment 12contraT121
Thoracal segment 13contraT131
Lumbar segment 1contraL11
Lumbar segment 2contraL21
Lumbar segment 3contraL31
Lumbar segment 4contraL41
Lumbar segment 5contraL51
Lumbar segment 6contraL61
Sacral segment 1contraSa11
Sacral segment 2contraSa21
Sacral segment 3contraSa31
Sacral segment 4contraSa41
Median nerveipsimen1
Tibial nerveipsitibial1
Ulnar nerveipsiuln1
StomachipsiOrgsStomS-1

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
Pedunculopontine tegmental nucleusipsiPPTg3
A5 noradrenaline cellsipsiA52
A7 noradrenaline cellsipsiA73
Locus coeruleusipsiLC3
Locus coeruleus ventral partipsiLCv1
Caudal part of ventral locus coeruleusipsiLCveca0.5
Ventrolateral reticular formationipsiVLRF-0.5
Dorsolateral pontine reticular formationipsiPRNDL1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi-0.5
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd-0.5
Subcoeruleus nucleusipsiSubC3
Raphe magnus nucleusipsiRMg-0.5
Cuneate nucleus dorsal partipsiCuD-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm-0.5
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area posterior partipsiLHAp3
Tuberal division of the lateral hypothalamic areaipsiLHTC3
Paraventricular hypothalamic nucleus dorsal partipsiPaD-0.5
Zona incerta rostromedial partipsiZIrm0
Somatomotoric regionsipsiSMR-0.5
Lateral agranular prefrontal cortexipsiAGl3
Medial agranular prefrontal cortexipsiAGm3
Primary somatosensory cortexipsiS13
Secondary somatosensory cortexipsiS23
Dorsal root ganglion C6ipsiDRGC6-0.5
Dorsal root ganglion C7ipsiDRGC7-0.5
Dorsal root ganglion C8ipsiDRGC8-0.5
Dorsal root ganglion T1ipsiDRGT1-0.5
Area X T2ipsiSCL10T2-0.5
Spinal cord layer 5 T2ipsiSCL5T2-0.5
Spinal cord layer 6 T2ipsiSCL6T2-0.5
Spinal cord layer 3 T2ipsiSCL3T2-0.5
Spinal cord layer 4 T2ipsiSCL4T2-0.5
Spinal cord layer 1 T2ipsiSCL1T2-0.5
Spinal cord layer 2 T2ipsiSCL2T2-0.5
Spinal cord layer 7 T2ipsiSCL7T2-0.5
Spinal cord layer 8 T2ipsiSCL8T2-0.5
Area X T3ipsiSCL10T3-0.5
Spinal cord layer 5 T3ipsiSCL5T3-0.5
Spinal cord layer 6 T3ipsiSCL6T3-0.5
Spinal cord layer 3 T3ipsiSCL3T3-0.5
Spinal cord layer 4 T3ipsiSCL4T3-0.5
Spinal cord layer 1 T3ipsiSCL1T3-0.5
Spinal cord layer 2 T3ipsiSCL2T3-0.5
Spinal cord layer 7 T3ipsiSCL7T3-0.5
Spinal cord layer 8 T3ipsiSCL8T3-0.5
Area X T4ipsiSCL10T4-0.5
Spinal cord layer 5 T4ipsiSCL5T4-0.5
Spinal cord layer 6 T4ipsiSCL6T4-0.5
Spinal cord layer 3 T4ipsiSCL3T4-0.5
Spinal cord layer 4 T4ipsiSCL4T4-0.5
Spinal cord layer 1 T4ipsiSCL1T4-0.5
Spinal cord layer 2 T4ipsiSCL2T4-0.5
Spinal cord layer 7 T4ipsiSCL7T4-0.5
Spinal cord layer 8 T4ipsiSCL8T4-0.5
Area X T5ipsiSCL10T5-0.5
Spinal cord layer 5 T5ipsiSCL5T5-0.5
Spinal cord layer 6 T5ipsiSCL6T5-0.5
Spinal cord layer 3 T5ipsiSCL3T5-0.5
Spinal cord layer 4 T5ipsiSCL4T5-0.5
Spinal cord layer 1 T5ipsiSCL1T5-0.5
Spinal cord layer 2 T5ipsiSCL2T5-0.5
Spinal cord layer 7 T5ipsiSCL7T5-0.5
Spinal cord layer 8 T5ipsiSCL8T5-0.5
Area X T6ipsiSCL10T6-0.5
Spinal cord layer 5 T6ipsiSCL5T6-0.5
Spinal cord layer 6 T6ipsiSCL6T6-0.5
Spinal cord layer 3 T6ipsiSCL3T6-0.5
Spinal cord layer 4 T6ipsiSCL4T6-0.5
Spinal cord layer 1 T6ipsiSCL1T6-0.5
Spinal cord layer 2 T6ipsiSCL2T6-0.5
Spinal cord layer 7 T6ipsiSCL7T6-0.5
Spinal cord layer 8 T6ipsiSCL8T6-0.5
Pedunculopontine tegmental nucleuscontraPPTg3
A7 noradrenaline cellscontraA70.5
Locus coeruleuscontraLC3
Locus coeruleus ventral partcontraLCv0.5
Caudal part of ventral locus coeruleuscontraLCveca0.5
Cuneiforme nucleuscontraCnF-2
Dorsolateral funiculuscontradlft-2
Cerebral cortexcontraCEC3
Frontal cortex area 2contraFr23
Parietal association cortexcontraPtA0.5
Insular cortexcontraICX0.5
Prefrontal cortexcontraPFC0.5
Lateral agranular prefrontal cortexcontraAGl3
Medial agranular prefrontal cortexcontraAGm-0.5
Primary somatosensory cortexcontraS13
Secondary somatosensory cortexcontraS23
Secondary visual cortexcontraV20.5
Greater splanchnic nerveipsiAutoNGS1
Greater occipital nerveipsiPNSgo-0.5
Median nerveipsimen-0.5
Superficial cutaneous part of the radial nerveipsiradsc2
Ulnar nerveipsiuln-0.5
Forelimb extensor digitorum communisipsiMuscFoEDC2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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