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Rat connectome



Somatomotoric regions left


Abbreviation
SMR
Color       
Superior regionsPrefrontal cortex

SynonymsAbbr.Language
Somatomotoric regionsSMR 
Sensorimotoric cortex  
Sensomotor cortex  
Sensorimotor cortex  
Sensorimotor cortex  
Somatic sensorimotor cortex  
Rolandic cortex  
Sensory motor cortex Eng
Dorsolateral cortical region Eng
Frontal sensorimotor cortex Eng
Frontoparietal sensorimotor area Eng
Sensorymotor cortex Eng
Frontoparietal cortex Eng

SubregionsSide
Caudal part of frontoparietal cortexleft
Frontoparietal cortex layersleft
Motoric regionsleft
Sensory regionsleft
Somatomotoric regions layersleft
Anterior part of the sensorimotor cortexleft
Medial sensorimotor cortexleft
Lateral somatomotoric regionsleft
Rostral somatomotoric regionsleft

Output to

NameSideAbbr.WeightDetails
Area medial to the fasciculus retroflexusipsiAMrf3
Area rostral to the fasciculus reflexusipsiARrf3
Brachium pontis stem of middle cerebellar peduncleipsibp-2
Perilemniscal zoneipsiPLZ-0.5
Periaqueductal grayipsiPAG-0.5
Red nucleusipsiR-0.5
Red nucleus parvicellular partipsiROC3
Intermediate gray layer of the superior colliculusipsiInG-0.5
Ventral tegmental area A10ipsiVTA-0.5
PonsipsiP-0.5
Lateral ponsipsiLaP3
Pons medial partipsiPme3
Pons ventral partipsiPve3
Reticulotegmental nucleus of the ponsipsiRtTg2
Pontine nucleiipsiPn3
Mesencephalic reticular formationipsiMRF-0.5
Deep mesencephalic nucleusipsiDpMe-0.5
Lateral reticular nucleusipsiLRt0
Nucleus of the solitary tractipsiSol2
Dorsal motor nucleus of vagusipsi10-0.5
Superior central raphe nucleusipsiCS-0.5
Raphe magnus nucleusipsiRMg1
Raphe obscurus nucleusipsiROb1
Rostral ventrolateral medullaipsiRVLM2
Dorsal column nucleiipsiDCN-0.5
Inferior oliveipsiIO-0.5
ThalamusipsiT3
Ventrolateral thalamic nucleusipsiVL-0.5
Ventrobasal complexipsiVB-0.5
Subparafascicular thalamic nucleus caudal partipsiSPFc1
Subparafascicular thalamic nucleus rostral partipsiSPFr1
Zona incertaipsiZI1
Pretectal regionipsiPRT-0.5
Internal capsuleipsiic-2
Corpus callosumipsicc-2
Dorsal columnipsidoco-2
Dorsolateral funiculusipsidlft-2
Dorsal part of the lateral funiculusipsilfd-2
Dorsomedial funiculusipsidmft-2
Medial lemniscusipsiml-2
Caudate putamenipsiCPu3
Central striatumipsiCPuce-0.5
Dorsal striatumipsiCPud-0.5
Dorsolateral striatumipsiCPudl3
Lateral striatumipsiCPul-0.5
Subthalamic nucleus central partipsiSThCe1
Subthalamic nucleus middle partipsiSThm1
Dorsal peduncular cortexipsiDP2
Secondary somatosensory cortexipsiS2-0.5
Somatomotoric regions layer 2ipsiSMRL22
Somatomotoric regions layer 3ipsiSMRL33
Somatomotoric regions layer 4ipsiSMRL43
Somatomotoric regions layer 5ipsiSMRL53
Spinal cordipsiMES3
Dorsal horn of spinal cordipsiDHMES-0.5
Gray matter of spinal cordipsiGMES0.5
Ventral gray of spinal cordipsiVGMES1
Intermediate zone of spinal cordipsiIzMES3
Pyramidal tractipsipy-2
Ventral funiculusipsivf-2
Ventromedial funiculusipsivemef-2
Cervical segmentsipsiCSeg3
Area X C1ipsiSCL10C11.5
Spinal cord layer 5 C1ipsiSCL5C1-0.5
Spinal cord layer 6 C1ipsiSCL6C1-0.5
Spinal cord layer 3 C1ipsiSCL3C1-0.5
Spinal cord layer 4 C1ipsiSCL4C1-0.5
Cervical segment 2ipsiCS23
Spinal cord layer 5 C2ipsiSCL5C2-0.5
Spinal cord layer 6 C2ipsiSCL6C2-0.5
Spinal cord layer 3 C2ipsiSCL3C2-0.5
Spinal cord layer 4 C2ipsiSCL4C2-0.5
Spinal cord layer 5 C3ipsiSCL5C3-0.5
Spinal cord layer 6 C3ipsiSCL6C3-0.5
Spinal cord layer 3 C3ipsiSCL3C3-0.5
Spinal cord layer 4 C3ipsiSCL4C3-0.5
Spinal cord layer 5 C4ipsiSCL5C4-0.5
Spinal cord layer 6 C4ipsiSCL6C4-0.5
Spinal cord layer 3 C4ipsiSCL3C4-0.5
Spinal cord layer 4 C4ipsiSCL4C4-0.5
Cervical segment 5ipsiCS52
Spinal cord layer 5 C5ipsiSCL5C5-0.5
Spinal cord layer 6 C5ipsiSCL6C5-0.5
Spinal cord layer 3 C5ipsiSCL3C5-0.5
Spinal cord layer 4 C5ipsiSCL4C5-0.5
Ventral horn C5ipsiVHC53
Spinal cord layer 9 C5ipsiSCL9C53
Spinal cord layer 5 C6ipsiSCL5C6-0.5
Spinal cord layer 6 C6ipsiSCL6C6-0.5
Spinal cord layer 3 C6ipsiSCL3C6-0.5
Spinal cord layer 4 C6ipsiSCL4C6-0.5
Spinal cord layer 5 C7ipsiSCL5C7-0.5
Spinal cord layer 6 C7ipsiSCL6C7-0.5
Spinal cord layer 3 C7ipsiSCL3C7-0.5
Spinal cord layer 4 C7ipsiSCL4C7-0.5
Spinal cord layer 5 C8ipsiSCL5C8-0.5
Spinal cord layer 6 C8ipsiSCL6C8-0.5
Spinal cord layer 3 C8ipsiSCL3C8-0.5
Spinal cord layer 4 C8ipsiSCL4C8-0.5
Thoracal segmentsipsiTSeg3
Spinal cord layers T1ipsiSCLT13
Area X T1ipsiSCL10T11.5
Spinal cord layer 5 T1ipsiSCL5T1-0.5
Spinal cord layer 6 T1ipsiSCL6T1-0.5
Spinal cord layer 3 T1ipsiSCL3T1-0.5
Spinal cord layer 4 T1ipsiSCL4T1-0.5
Spinal cord layer 5 T2ipsiSCL5T2-0.5
Spinal cord layer 6 T2ipsiSCL6T2-0.5
Spinal cord layer 3 T2ipsiSCL3T2-0.5
Spinal cord layer 4 T2ipsiSCL4T2-0.5
Spinal cord layer 5 T3ipsiSCL5T3-0.5
Spinal cord layer 6 T3ipsiSCL6T3-0.5
Spinal cord layer 3 T3ipsiSCL3T3-0.5
Spinal cord layer 4 T3ipsiSCL4T3-0.5
Spinal cord layer 5 T4ipsiSCL5T4-0.5
Spinal cord layer 6 T4ipsiSCL6T4-0.5
Spinal cord layer 3 T4ipsiSCL3T4-0.5
Spinal cord layer 4 T4ipsiSCL4T4-0.5
Spinal cord layer 5 T5ipsiSCL5T5-0.5
Spinal cord layer 6 T5ipsiSCL6T5-0.5
Spinal cord layer 3 T5ipsiSCL3T5-0.5
Spinal cord layer 4 T5ipsiSCL4T5-0.5
Spinal cord layer 5 T6ipsiSCL5T6-0.5
Spinal cord layer 6 T6ipsiSCL6T6-0.5
Spinal cord layer 3 T6ipsiSCL3T6-0.5
Spinal cord layer 4 T6ipsiSCL4T6-0.5
Spinal cord layer 5 T7ipsiSCL5T7-0.5
Spinal cord layer 6 T7ipsiSCL6T7-0.5
Spinal cord layer 3 T7ipsiSCL3T7-0.5
Spinal cord layer 4 T7ipsiSCL4T7-0.5
Spinal cord layer 5 T8ipsiSCL5T8-0.5
Spinal cord layer 6 T8ipsiSCL6T8-0.5
Spinal cord layer 3 T8ipsiSCL3T8-0.5
Spinal cord layer 4 T8ipsiSCL4T8-0.5
Spinal cord layer 5 T9ipsiSCL5T9-0.5
Spinal cord layer 6 T9ipsiSCL6T9-0.5
Spinal cord layer 3 T9ipsiSCL3T9-0.5
Spinal cord layer 4 T9ipsiSCL4T9-0.5
Thoracal segment 10ipsiT10-0.5
Spinal cord layer 5 T10ipsiSCL5T10-0.5
Spinal cord layer 6 T10ipsiSCL6T10-0.5
Spinal cord layer 3 T10ipsiSCL3T10-0.5
Spinal cord layer 4 T10ipsiSCL4T10-0.5
Spinal cord layer 5 T11ipsiSCL5T11-0.5
Spinal cord layer 6 T11ipsiSCL6T11-0.5
Spinal cord layer 3 T11ipsiSCL3T11-0.5
Spinal cord layer 4 T11ipsiSCL4T11-0.5
Spinal cord layer 5 T12ipsiSCL5T12-0.5
Spinal cord layer 6 T12ipsiSCL6T12-0.5
Spinal cord layer 3 T12ipsiSCL3T12-0.5
Spinal cord layer 4 T12ipsiSCL4T12-0.5
Spinal cord layer 5 T13ipsiSCL5T13-0.5
Spinal cord layer 6 T13ipsiSCL6T13-0.5
Spinal cord layer 3 T13ipsiSCL3T13-0.5
Spinal cord layer 4 T13ipsiSCL4T13-0.5
Lumbar segmentsipsiLSeg-1
Lumbar segment 1ipsiL13
Area X L1ipsiSCL10L11.5
Spinal cord layer 5 L1ipsiSCL5L1-0.5
Spinal cord layer 6 L1ipsiSCL6L1-0.5
Spinal cord layer 3 L1ipsiSCL3L1-0.5
Spinal cord layer 4 L1ipsiSCL4L1-0.5
Lumbar segment 2ipsiL23
Spinal cord layer 5 L2ipsiSCL5L2-0.5
Spinal cord layer 6 L2ipsiSCL6L2-0.5
Spinal cord layer 3 L2ipsiSCL3L2-0.5
Spinal cord layer 4 L2ipsiSCL4L2-0.5
Spinal cord layer 5 L3ipsiSCL5L3-0.5
Spinal cord layer 6 L3ipsiSCL6L3-0.5
Spinal cord layer 3 L3ipsiSCL3L3-0.5
Spinal cord layer 4 L3ipsiSCL4L3-0.5
Spinal cord layer 5 L4ipsiSCL5L4-0.5
Spinal cord layer 6 L4ipsiSCL6L4-0.5
Spinal cord layer 3 L4ipsiSCL3L4-0.5
Spinal cord layer 4 L4ipsiSCL4L4-0.5
Spinal cord layer 5 L5ipsiSCL5L5-0.5
Spinal cord layer 6 L5ipsiSCL6L5-0.5
Spinal cord layer 3 L5ipsiSCL3L5-0.5
Spinal cord layer 4 L5ipsiSCL4L5-0.5
Spinal cord layer 5 L6ipsiSCL5L6-0.5
Spinal cord layer 6 L6ipsiSCL6L6-0.5
Spinal cord layer 3 L6ipsiSCL3L6-0.5
Spinal cord layer 4 L6ipsiSCL4L6-0.5
Area X S1ipsiSCL10S11.5
Spinal cord layer 5 S1ipsiSCL5S1-0.5
Spinal cord layer 6 S1ipsiSCL6S1-0.5
Spinal cord layer 3 S1ipsiSCL3S1-0.5
Spinal cord layer 4 S1ipsiSCL4S1-0.5
Spinal cord layer 5 S2ipsiSCL5S2-0.5
Spinal cord layer 6 S2ipsiSCL6S2-0.5
Spinal cord layer 3 S2ipsiSCL3S2-0.5
Spinal cord layer 4 S2ipsiSCL4S2-0.5
Spinal cord layer 5 S3ipsiSCL5S3-0.5
Spinal cord layer 6 S3ipsiSCL6S3-0.5
Spinal cord layer 3 S3ipsiSCL3S3-0.5
Spinal cord layer 4 S3ipsiSCL4S3-0.5
Spinal cord layer 5 S4ipsiSCL5S4-0.5
Spinal cord layer 6 S4ipsiSCL6S4-0.5
Spinal cord layer 3 S4ipsiSCL3S4-0.5
Spinal cord layer 4 S4ipsiSCL4S4-0.5
Red nucleus parvicellular partcontraROC1
PonscontraP-0.5
Caudal two third of the lateral reticular nucleuscontraCaTTLRt0
Rostromedial part of the lateral reticular nucleus magnocellular partcontraRMLRtMC0.5
Lateral reticular nucleus subtrigeminal partcontraLRtS50
Ventromedial hypothalamic nucleuscontraVMH-0.5
Subparafascicular thalamic nucleus caudal partcontraSPFc0.5
Subparafascicular thalamic nucleus rostral partcontraSPFr0.5
Corpus callosumcontracc-2
Dorsomedial funiculuscontradmft-2
Caudate putamencontraCPu0.5
Dorsolateral striatumcontraCPudl1
Somatomotoric regionscontraSMR3
Spinal cordcontraMES3
Pyramidal tractcontrapy-2
Cervical segment 2contraCS2-0.5
Cervical segment 3contraCS3-0.5
Cervical segment 5contraCS52
Ventral horn C5contraVHC53
Spinal cord layer 9 C5contraSCL9C53
Sciatic nerveipsisci3

Input from

NameSideAbbr.WeightDetails
Substantia nigra A9ipsiSN-0.5
PonsipsiP-0.5
Locus coeruleusipsiLC1
Locus coeruleus caudal partipsiLCca-0.5
Dorsal division of the caudal locus coeruleusipsiLCcaD-0.5
Locus coeruleus caudal part ventral partipsiLCcV0
Locus coeruleus rostral partipsiLCRo0
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus caudal partipsiDRC1
Dorsal raphe nucleus dorsal partipsiDRD3
Dorsal raphe nucleus intermediate partipsiDRim3
Dorsal raphe nucleus medial partipsiDRNM-0.5
Dorsal raphe nucleus ventral partipsiDRV3
Median raphe nucleusipsiMnR3
B6 subnucleusipsiB63
B7 cell groupipsiB7CG3
B8 cell groupipsiB8CG0.5
Basal forebrainipsiBAF-0.5
Nucleus of the horizontal limb of the diagonal bandipsiHDB-0.5
Medial septal nucleusipsiMS-0.5
Basal nucleus MeynertipsiB-0.5
HypothalamusipsiHYPO0
Lateral hypothalamic areaipsiLH1
Lateral hypothalamic area [Lateral zone tuberal level]ipsiLHtu1
Dorsomedial hypothalamic nucleus laterodorsal partipsiDMLD1
Supramammillar nucleus lateral partipsiSuML-0.5
ThalamusipsiT3
Anterodorsal thalamic nucleusipsiAD1
Anteromedial thalamic nucleus ventral partipsiAMV1
Anteroventral thalamic nucleusipsiAV1
Centrolateral thalamic nucleusipsiCL-0.5
Centrolateral thalamic nucleus dorsal partipsiCLD-0.5
Centrolateral thalamic nucleus ventral portionipsiCLV-0.5
Posterior thalamic nuclear groupipsiPo2
Mediodorsal thalamic nucleus caudal two thirdsipsiMDCtt-0.5
Mediodorsal thalamic nucleus dorsal two thirdsipsiMDDtt-0.5
Ventro anterior thalamic nucleusipsiVA2
Ventrolateral thalamic nucleusipsiVL2
Ventrolateral thalamic nucleus dorsolateral partipsiVLdL1
Ventrolateral thalamic nucleus anteroventral partipsiVLav1
Ventral posterolateral thalamic nucleusipsiVPL2
Ventral posteromedial thalamic nucleusipsiVPM2
Ventromedial thalamic nucleusipsiVM2
Central ventromedial thalamic nucleusipsiCeVM-0.5
Ventromedial thalamic nucleus dorsomedial partipsiVMDM-0.5
Ventromedial thalamic nucleus ventral partipsiVMV-0.5
Lateral posterior thalamic nucleus mediorostral partipsiLPMR1
Ventral thalamusipsiVNT3
Subparafascicular thalamic nucleusipsiSPF1
Subparafascicular thalamic nucleus rostral partipsiSPFr0
Lateral habenular nucleusipsiLHb-0.5
Medial habenular nucleusipsiMHb-0.5
Internal capsuleipsiic-2
Corpus callosumipsicc-2
Basolateral amygdaloid nucleusipsiBL1
ClaustrumipsiCl3
Anterior part of the claustrumipsiACl1.5
Anterodorsal part of the claustrumipsiADCl4
Anteroposterior part of the claustrumipsiClAP3
Central part of claustrumipsiCeCl2
Dorsal part of claustrumipsiDCl3
Mediolateral part of the claustrumipsiClML3
Posterior part of the claustrumipsiClP1
Globus pallidusipsiGP2
Lateral globus pallidusipsiLGP2
Medial globus pallidusipsiMGP1
Caudate putamenipsiCPu2
Dorsal striatumipsiCPud1
Dorsolateral striatumipsiCPudl2
Parasubthalamic nucleusipsiPSTh1
Field CA1 of hippocampusipsiCA11
Dorsal anterior cingulate cortexipsiDACC1
NeocortexipsiNEOCX3
Frontal cortex area 2ipsiFr21
Sensory regionsipsiSR0.5
Commissural systemsipsicos-2
Locus coeruleuscontraLC1
Dorsolateral funiculus cervical part C7contradlftC7-2
Dorsolateral funiculus cervical part C8contradlftC8-2
ClaustrumcontraCl2
Anterior part of the claustrumcontraACl0.5
Anterodorsal part of the claustrumcontraADCl1
Anteroposterior part of the claustrumcontraClAP1
Central part of claustrumcontraCeCl0.5
Mediolateral part of the claustrumcontraClML1
Posterior part of the claustrumcontraClP0.5
Dorsal striatumcontraCPud1
Dorsolateral striatumcontraCPudl1
NeocortexcontraNEOCX2
Somatomotoric regionscontraSMR3
Somatomotoric regions layer 2contraSMRL2-0.5
Somatomotoric regions layer 6contraSMRL6-0.5
Commissural systemscontracos-2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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