University of Rostock

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Rat connectome



Spinal cord layers T2 left


Abbreviation
SCLT2
Color       
Superior regionsThoracal segment 2

SynonymsAbbr.Language
Spinal cord layers T2SCLT2Eng

SubregionsSide
Area X T2left
Dorsal horn T2left
Ventral horn T2left

Output to

NameSideAbbr.WeightDetails
CerebellumipsiCERE2
Lateral parabrachial nucleus lateral partipsiLPBL0.5
Ventral part of spinal trigeminal nucleus oral partipsiSp5OV-0.5
Nucleus ZipsiZ2
Dorsal thalamusipsiDOR1
Submedius thalamic nucleusipsiSub0
Ventrobasal complex medial partipsiVBM1
Lateral posterior thalamic nucleusipsiLP1
Intercalated nucleus T2ipsiIClT2-0.5
Intermediolateral cell column pars funicularis T2ipsiILFT2-0.5
Autonomic cell column T2ipsiAutoT2-0.5
Lateral parabrachial nucleus lateral partcontraLPBL1
Ventral part of spinal trigeminal nucleus oral partcontraSp5OV-0.5
Dorsal thalamuscontraDOR2
Submedius thalamic nucleuscontraSub0
Superior cervical ganglionipsiAutoSCeG3
Bulbocavernosus muscleipsiMuscBCV-10
Ischiocavernosus muscleipsiMuscicav-10

Input from

NameSideAbbr.WeightDetails
Red nucleusipsiR-0.5
Red nucleus magnocellular partipsiRMC-0.5
Red nucleus parvicellular partipsiROC-0.5
Dorsolateral pontine tegmentumipsiDLPT-0.5
Peduncularpontine nucleusipsiPPN-0.5
Laterodorsal tegmental nucleusipsiLDTg3
Sublaterodorsal tegmental nucleusipsiSLD-0.5
Dorsal tegmental nucleusipsiDTg1
Pedunculopontine tegmental nucleusipsiPPTg2
A5 noradrenaline cellsipsiA52
A7 noradrenaline cellsipsiA7-0.5
Locus coeruleusipsiLC3
Locus coeruleus caudal part ventral partipsiLCcV1
Ventral half of the locus coeruleusipsiLCvh-0.5
Prepositus nucleusipsiPr2
Medial reticular formationipsiRFm-0.5
Midline reticular formationipsiMiRF1
Peribrachial regionipsiPBR-0.5
Koelliker Fuse nucleusipsiKF1
Gigantocellular reticular nucleusipsiGi2
Lateral reticular nucleusipsiLRt-0.5
Medullary reticular nucleus ventral partipsiMdV2
Subcoeruleus nucleusipsiSubC-0.5
C1 adrenaline cellsipsiC12
C2 adrenaline cellsipsiC22
C3 adrenaline cellsipsiC32
Ambiguus nucleusipsiAmb3
Motor trigeminal nucleusipsiMo53
Vestibular nucleiipsiVnc2
Medial vestibular nucleusipsiMVe2
Nucleus of the solitary tractipsiSol-0.5
Nucleus of the solitary tract lateral partipsiSolL1
Nucleus of the solitary tract ventrolateral partipsiSolVL1
Raphe nucleiipsiRAN-0.5
Caudal raphe nucleiipsiRANc-0.5
Raphe magnus nucleusipsiRMg3
Raphe obscurus nucleusipsiROb2
Raphe pallidus nucleusipsiRPa2
Rostral ventrolateral medullaipsiRVLM1
A1 noradrenergic cellsipsiA10.5
A2 noradrenergic cellsipsiA21
Paragigantocellular reticular nucleusipsiPGi-0.5
Lateral paragigantocellular nucleusipsiLPGi2
Rostral part of the ventromedial medulla oblongataipsiRMeObvm-0.5
Dorsomedial hypothalamic nucleusipsiDMHy-0.5
Lateral zoneipsiLHA-0.5
Lateral hypothalamic areaipsiLH-0.5
Lateral hypothalamic area rostral partipsiLHro3
Ventromedial hypothalamic nucleusipsiVMH3
Ventromedial hypothalamic nucleus ventral partipsiVMHV1
Arcuate nucleusipsiArc1
Paraventricular nucleus of the hypothalamus magnocellular division posterior magnocellular partipsiPaAMp1
Paraventricular hypothalamic nucleus lateral magnocellular part [Periventricular zone anterior region]ipsiPaLM0.5
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP3
Paraventricular hypothalamic nucleus parvicellular division periventricular partipsiPaPP1
Paraventricular hypothalamic nucleus lateral parvocellular partipsiLPPa3
Paraventricular hypothalamic nucleus medial parvocellular partipsiMPPa1
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP3
Paraventricular hypothalamic nucleus ventral part [Periventricular zone anterior region]ipsiPaV0.5
Paraventricular hypothalamic nucleusipsiPa2
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag1
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo3
Paraventricular hypothalamic nucleus dorsal parvocellular divisionipsiPavPoD3
Paraventricular nucleus ventromedial parvocellular partipsiPaVMp3
Paraventricular hypothalamic nucleus periventricular partipsiPapv3
Paraventricular nucleus dorsal partipsiPaDo2.5
Retrochiasmatic areaipsiRCh1
Ventromedial thalamic nucleus dorsolateral partipsiVMDL3
Zona incertaipsiZI2
Zona incerta rostral partipsiZIR2
Region around the fornixipsiraf-0.5
Spinal cord layer 5 C1ipsiSCL5C12
Spinal cord layer 6 C1ipsiSCL6C12
Spinal cord layer 3 C1ipsiSCL3C11
Spinal cord layer 4 C1ipsiSCL4C13
Spinal cord layer 1 C1ipsiSCL1C13
Spinal cord layer 2 C1ipsiSCL2C11
Spinal cord layer 7 C1ipsiSCL7C12
Spinal cord layer 8 C1ipsiSCL8C12
Spinal cord layer 9 C1ipsiSCL9C10
Spinal cord layer 5 C2ipsiSCL5C22
Spinal cord layer 6 C2ipsiSCL6C22
Spinal cord layer 3 C2ipsiSCL3C21
Spinal cord layer 4 C2ipsiSCL4C23
Spinal cord layer 1 C2ipsiSCL1C23
Spinal cord layer 2 C2ipsiSCL2C21
Spinal cord layer 7 C2ipsiSCL7C22
Spinal cord layer 8 C2ipsiSCL8C22
Spinal cord layer 9 C2ipsiSCL9C20
Spinal cord layer 5 C3ipsiSCL5C32
Spinal cord layer 6 C3ipsiSCL6C32
Spinal cord layer 3 C3ipsiSCL3C31
Spinal cord layer 4 C3ipsiSCL4C33
Spinal cord layer 1 C3ipsiSCL1C33
Spinal cord layer 2 C3ipsiSCL2C31
Spinal cord layer 7 C3ipsiSCL7C32
Spinal cord layer 8 C3ipsiSCL8C32
Spinal cord layer 9 C3ipsiSCL9C30
Spinal cord layer 5 C4ipsiSCL5C42
Spinal cord layer 6 C4ipsiSCL6C42
Spinal cord layer 3 C4ipsiSCL3C41
Spinal cord layer 4 C4ipsiSCL4C43
Spinal cord layer 1 C4ipsiSCL1C43
Spinal cord layer 2 C4ipsiSCL2C41
Spinal cord layer 7 C4ipsiSCL7C42
Spinal cord layer 8 C4ipsiSCL8C42
Spinal cord layer 9 C4ipsiSCL9C40
Spinal cord layer 5 C5ipsiSCL5C52
Spinal cord layer 6 C5ipsiSCL6C52
Spinal cord layer 3 C5ipsiSCL3C51
Spinal cord layer 4 C5ipsiSCL4C53
Spinal cord layer 1 C5ipsiSCL1C53
Spinal cord layer 2 C5ipsiSCL2C51
Spinal cord layer 7 C5ipsiSCL7C52
Spinal cord layer 8 C5ipsiSCL8C52
Spinal cord layer 9 C5ipsiSCL9C50
Spinal cord layer 5 C6ipsiSCL5C62
Spinal cord layer 6 C6ipsiSCL6C62
Spinal cord layer 3 C6ipsiSCL3C61
Spinal cord layer 4 C6ipsiSCL4C63
Spinal cord layer 1 C6ipsiSCL1C63
Spinal cord layer 2 C6ipsiSCL2C61
Spinal cord layer 7 C6ipsiSCL7C62
Spinal cord layer 8 C6ipsiSCL8C62
Spinal cord layer 9 C6ipsiSCL9C60
Spinal cord layer 5 C7ipsiSCL5C72
Spinal cord layer 6 C7ipsiSCL6C72
Spinal cord layer 3 C7ipsiSCL3C71
Spinal cord layer 4 C7ipsiSCL4C73
Spinal cord layer 1 C7ipsiSCL1C73
Spinal cord layer 2 C7ipsiSCL2C71
Spinal cord layer 7 C7ipsiSCL7C72
Spinal cord layer 8 C7ipsiSCL8C72
Spinal cord layer 9 C7ipsiSCL9C70
Spinal cord layer 5 C8ipsiSCL5C82
Spinal cord layer 6 C8ipsiSCL6C82
Spinal cord layer 3 C8ipsiSCL3C81
Spinal cord layer 4 C8ipsiSCL4C83
Spinal cord layer 1 C8ipsiSCL1C83
Spinal cord layer 2 C8ipsiSCL2C81
Spinal cord layer 7 C8ipsiSCL7C82
Spinal cord layer 8 C8ipsiSCL8C82
Spinal cord layer 9 C8ipsiSCL9C80
Red nucleus magnocellular partcontraRMC-0.5
Red nucleus parvicellular partcontraROC-0.5
Red nucleus rostral partcontraRnRo3
Lateral hypothalamic areacontraLH-0.5
Ventromedial hypothalamic nucleus ventral partcontraVMHV0.5
Paraventricular hypothalamic nucleuscontraPa0.5
Retrochiasmatic areacontraRCh0.5
Zona incertacontraZI-0.5
Spinal cord layer 5 C1contraSCL5C11
Spinal cord layer 6 C1contraSCL6C11
Spinal cord layer 3 C1contraSCL3C12
Spinal cord layer 4 C1contraSCL4C11
Spinal cord layer 1 C1contraSCL1C12
Spinal cord layer 2 C1contraSCL2C12
Spinal cord layer 7 C1contraSCL7C13
Spinal cord layer 8 C1contraSCL8C13
Spinal cord layer 9 C1contraSCL9C10
Spinal cord layer 5 C2contraSCL5C21
Spinal cord layer 6 C2contraSCL6C21
Spinal cord layer 3 C2contraSCL3C22
Spinal cord layer 4 C2contraSCL4C21
Spinal cord layer 1 C2contraSCL1C22
Spinal cord layer 2 C2contraSCL2C22
Spinal cord layer 7 C2contraSCL7C23
Spinal cord layer 8 C2contraSCL8C23
Spinal cord layer 9 C2contraSCL9C20
Spinal cord layer 5 C3contraSCL5C31
Spinal cord layer 6 C3contraSCL6C31
Spinal cord layer 3 C3contraSCL3C32
Spinal cord layer 4 C3contraSCL4C31
Spinal cord layer 1 C3contraSCL1C32
Spinal cord layer 2 C3contraSCL2C32
Spinal cord layer 7 C3contraSCL7C33
Spinal cord layer 8 C3contraSCL8C33
Spinal cord layer 9 C3contraSCL9C30
Spinal cord layer 5 C4contraSCL5C41
Spinal cord layer 6 C4contraSCL6C41
Spinal cord layer 3 C4contraSCL3C42
Spinal cord layer 4 C4contraSCL4C41
Spinal cord layer 1 C4contraSCL1C42
Spinal cord layer 2 C4contraSCL2C42
Spinal cord layer 7 C4contraSCL7C43
Spinal cord layer 8 C4contraSCL8C43
Spinal cord layer 9 C4contraSCL9C40
Spinal cord layer 5 C5contraSCL5C51
Spinal cord layer 6 C5contraSCL6C51
Spinal cord layer 3 C5contraSCL3C52
Spinal cord layer 4 C5contraSCL4C51
Spinal cord layer 1 C5contraSCL1C52
Spinal cord layer 2 C5contraSCL2C52
Spinal cord layer 7 C5contraSCL7C53
Spinal cord layer 8 C5contraSCL8C53
Spinal cord layer 9 C5contraSCL9C50
Spinal cord layer 5 C6contraSCL5C61
Spinal cord layer 6 C6contraSCL6C61
Spinal cord layer 3 C6contraSCL3C62
Spinal cord layer 4 C6contraSCL4C61
Spinal cord layer 1 C6contraSCL1C62
Spinal cord layer 2 C6contraSCL2C62
Spinal cord layer 7 C6contraSCL7C63
Spinal cord layer 8 C6contraSCL8C63
Spinal cord layer 9 C6contraSCL9C60
Spinal cord layer 5 C7contraSCL5C71
Spinal cord layer 6 C7contraSCL6C71
Spinal cord layer 3 C7contraSCL3C72
Spinal cord layer 4 C7contraSCL4C71
Spinal cord layer 1 C7contraSCL1C72
Spinal cord layer 2 C7contraSCL2C72
Spinal cord layer 7 C7contraSCL7C73
Spinal cord layer 8 C7contraSCL8C73
Spinal cord layer 9 C7contraSCL9C70
Spinal cord layer 5 C8contraSCL5C81
Spinal cord layer 6 C8contraSCL6C81
Spinal cord layer 3 C8contraSCL3C82
Spinal cord layer 4 C8contraSCL4C81
Spinal cord layer 1 C8contraSCL1C82
Spinal cord layer 2 C8contraSCL2C82
Spinal cord layer 7 C8contraSCL7C83
Spinal cord layer 8 C8contraSCL8C83
Spinal cord layer 9 C8contraSCL9C80

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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