University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Ventral medial septum right


Abbreviation
VMSe
Color       
Superior regionsSeptal region

SynonymsAbbr.Language
Ventral septal nucleus  
Ventral medial septumVMSeEng
Ventromedial septum Eng

SubregionsSide
Intermediate part of the ventral medial septumright

Output to

NameSideAbbr.WeightDetails
Paraflocculus ventral partipsiPFlv1
FlocculusipsiFl1
Paraventricular hypothalamic nucleus perinuclear zoneipsiPapnz4
Paraventricular hypothalamic nucleus periventricular partipsiPapv-0.5
Suprachiasmatic nucleus perinuclear zoneipsiSChpnz4
Supraoptic nucleus [Supraoptic region]ipsiSO1
Supraoptic nucleus perinuclear zoneipsiSOpnz4
Anteromedial thalamic nucleusipsiAM-0.5
Anteroventral thalamic nucleusipsiAV-0.5
Paratenial thalamic nucleusipsiPT2
Paraventricular thalamic nucleusipsiPV2
Reuniens thalamic nucleusipsiRe-0.5
Reticular thalamic nucleusipsiRt-0.5
Medial habenular nucleusipsiMHb3
Dentate gyrusipsiDG-0.5
Dentate gyrus molecular layeripsiDGmL1
Supragranular layer of the dentate gyrusipsiDGsga3
Dentate gyrus subgranule zoneipsiDsGz3
Olfactory bulb A16ipsiMOB-0.5

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG-1
Peduncularpontine nucleusipsiPPN-1
Ventral tegmental area A10ipsiVTA-1
Retrorubral nucleusipsiRR2
Laterodorsal tegmental nucleusipsiLDTg0.5
Locus coeruleusipsiLC-1
Dorsal raphe nucleusipsiDR-1
Median raphe nucleusipsiMnR-1
Nucleus of the diagonal band mid-dorsoventral partipsiDBBmdv-2
Lateral preoptic areaipsiLPO-1
Medial preoptic areaipsiMPA1
Lateral hypothalamic areaipsiLH3
Anterior hypothalamic areaipsiAHA3
Posterior hypothalamic areaipsiPHA1
Posterior hypothalamic nucleusipsiPH-1
Ventromedial hypothalamic nucleusipsiVMH-1
Perichiasmatic regionipsiPeCC2
Premammillary nucleus dorsal partipsiPMD3
Premammillary nucleus ventral partipsiPMV3
Supramammillar nucleusipsiSuM3
Paratenial thalamic nucleusipsiPT1
Paraventricular thalamic nucleusipsiPV3
Bed nucleus of the stria terminalisipsiBST1
Central amygdaloid nucleusipsiCe-1
Medial amygdaloid nucleusipsiMe-1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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