University of Rostock

Department of Anatomy

Neuroscience Group

  Homepage

 Staff

 neuroVIISAS

 Rat connectome

 Other connectomes

 Neuroimaging

 Neurodegeneration

 Neuroproteomics

 Students

 Links

 Publications

Rat connectome



Paratenial thalamic nucleus right


Abbreviation
PT
Color       
Superior regionsMidline group of the dorsal thalamus

SynonymsAbbr.Language
Nucleus paratenialis Lat
Paratenial nucleusPTEng
Paratenial habenular nucleus Eng
Parataenial nucleus of the thalamus Eng
Parataenial nucleus Eng
Paratenial thalamic nucleusPTEng
Paratenial nucleus  

SubregionsSide
Paratenial thalamic nucleus anterior partright
Paratenial thalamic nucleus caudal partright
Paratenial thalamic nucleus dorsomedial portionright
Paratenial thalamic nucleus rostral partright
Paratenial thalamic nucleus ventrolateral partright
Paratenial thalamic nucleus ventral partright
Paratenial thalamic nucleus dorsal partright

Output to

NameSideAbbr.WeightDetails
A5 noradrenaline cellscontraA50
Inferior salivatory nucleuscontraIS0
Superior salivatory nucleuscontraSuS1
Paraventricular hypothalamic nucleuscontraPa0
Amygdaloid complexcontraAC-0.5
Central division of sublenticular extended amygdalacontraSLEAc-0.5
Accumbens nucleuscontraAc1
Accumbens nucleus shellcontraAcbSh-0.5
Dorsomedial shellcontraAcbShdm-0.5
HippocampuscontraHIPP-0.5
Ammon horncontraAmH-0.5
Field CA1 of hippocampuscontraCA10.5
Subiculum ventral partcontraSv-0.5
Ventral hippocampuscontraHIPPv-0.5
Entorhinal cortexcontraEnt0
Anterior cingulate cortexcontraACC1
Cingulate cortex area 1contraCg1-0.5
Cingulate cortex area 2contraCg2-0.5
Prelimbic cortexcontraPrL2
Infralimbic cortexcontraIL2
Insular cortexcontraICX1
Agranular insular cortex rostral partcontraRAIC1
Dysgranular insular cortexcontraDI-0.5
Medial agranular prefrontal cortexcontraAGm2
Septal regioncontraSER0
Cervical segment 7contraCS7-1
Ventral tegmental area A10ipsiVTA1
A5 noradrenaline cellsipsiA50
Inferior salivatory nucleusipsiIS0
Superior salivatory nucleusipsiSuS1
Endopiriform systemipsiEnN-1
Dorsal endopiriform nucleusipsiDEn-0.5
Ventral endopiriform nucleusipsiVEn1
Diagonal band of BrocaipsiDBB0
Nucleus of the horizontal limb of the diagonal bandipsiHDB1
Nucleus of the vertical limb of the diagonal bandipsiVDB2
Medial septal nucleusipsiMS-0.5
Basal nucleus Meynert medial partipsiBmp2
Substantia innominataipsiSI0
Substantia innominata basal partipsiSIB1
Substantia innominata dorsal partipsiSID-0.5
Substantia innominata sublenticular partipsiSIS1
Substantia innominata ventral partipsiSIV1
Substantia innominata caudoventral partipsiSICV-0.5
Lateral preoptic areaipsiLPO-0.5
Medial preoptic areaipsiMPA1
Medial preoptic nucleusipsiMPO0
Tenia tectaipsiTT1.5
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC1
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR2
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area caudal partipsiLHc1
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0.5
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd0.5
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv0
Lateroanterior hypothalamic nucleusipsiLAH-0.5
Medial division of the hypothalamusipsiMdH0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM0
Posterior hypothalamic areaipsiPHA0
Ventromedial hypothalamic nucleusipsiVMH2
Arcuate nucleusipsiArc0
Paraventricular hypothalamic nucleusipsiPa2
Suprachiasmatic nucleusipsiSCh1
Supraoptic nucleus [Supraoptic region]ipsiSO2
Supraoptic nucleus dorsal partipsiSOd-0.5
Perinuclear zone dorsal to the supraoptic regionipsiSoRpnzd0
Premammillary nucleus ventral partipsiPMV0.5
Supramammillar nucleusipsiSuM0
Dorsal thalamusipsiDOR-0.5
Anterior group of the dorsal thalamusipsiATN1
Anteromedial thalamic nucleusipsiAM1
Interoanteromedial thalamic nucleusipsiIAM0
Central medial thalamic nucleusipsiCM-0.5
Parafascicular thalamic nucleusipsiPF0
Rhomboid thalamic nucleusipsiRh0
Mediodorsal thalamic nucleusipsiMD0
Intermediodorsal thalamic nucleusipsiIMD-0.5
Paratenial thalamic nucleusipsiPT0
Paraventricular thalamic nucleusipsiPV1
Reuniens thalamic nucleusipsiRe1
Ventral posterolateral thalamic nucleusipsiVPL-0.5
Ventral thalamusipsiVNT-0.5
Reticular thalamic nucleusipsiRt1
Reticular thalamic nucleus medial partipsiRtm3
Posteromedial sector of the reticular thalamic nucleusipsiRtpm3
Ventral medial nucleus of the thalamusipsiVMT3
Zona incertaipsiZI3
Medial forebrain bundle at the level of the anterior commissureipsimfbac-2
Medial forebrain bundle at the level of the lateral preoptic areraipsimfbLpa-2
Medial forebrain bundle at the level of the anterior hypothalamic nucleusipsimfbahn-2
Medial forebrain bundle at the level of the lateral hypothalamusipsimfbLH-2
Medial forebrain bundle at the level of the posterior hypothalamic nucleusipsimfbPH0
Dorsal bank of the anterior portion of the rhinal fissureipsidarf0
Amygdaloid complexipsiAC2
Basal nucleusipsiBnc2
Accessory basal nucleusipsiAB2
Basal dorsal nucleusipsiBnD3
Basal nucleus anterior subdivisionipsiBncA2
Basal nucleus ventral divisonipsiBncV2
Basal nucleus ventral divison posterior partipsiBncVp-0.5
Basolateral amygdaloid nucleusipsiBL2
Anterior basolateral nucleusipsiBLA2.5
Basolateral nucleus rostral partipsiBLRP1
Posterior basolateral nucleusipsiBLP-0.5
Basomedial amygdaloid nucleusipsiBM3
Anterior basomedial nucleusipsiBMA1
Lateral amygdaloid nucleusipsiLA2
Dorsolateral part of the lateral nucleusipsiLaDL2
Posterior part of the lateral nucleusipsiLAP-0.5
Ventromedial part of the lateral nucleusipsiLaVM2
Bed nucleus of the stria terminalisipsiBST3
Bed nucleus of the stria terminalis anterior medial partipsiBSTAM3
Bed nucleus of the stria terminalis intraamygdaloid divisionipsiBSTIA2
Bed nucleus of the stria terminalis lateral divisionipsiBSTL1
Bed nucleus of the stria terminalis medial divisionipsiBSTM1
Bed nucleus of the stria terminalis medial division posterior partipsiBSTMP3
Bed nucleus of the stria terminalis medial division ventral partipsiBSTMV3
Bed nucleus of the stria terminalis posterior division intermediate partipsiBSTPi3
Bed nucleus of the stria terminalis preoptic partipsiBSTPO3
Central amygdaloid nucleusipsiCe2
Capsule like area surrounding central amygdaloid nucleusipsiCec2
Central amygdaloid nucleus caudal divisionipsiCeCD-0.5
Central amygdaloid nucleus intermediate divisionipsiCeI-0.5
Central amygdaloid nucleus lateral divisionipsiCeL-0.5
Central amygdaloid nucleus medial divisionipsiCeM3
Central amygdaloid nucleus ventral partipsiCeV-0.5
Interstitial nucleus of the posterior limb of the anterior commissure medial partipsiIPACM2
Central division of sublenticular extended amygdalaipsiSLEAc-0.5
Amygdalopiriform transition areaipsiAPir2
Anterior amygdaloid areaipsiAA1.5
Cortical amygdaloid nucleusipsiCAn2
Anterior cortical amygdaloid nucleusipsiACo2
Posterior amygdaloid nucleusipsiCOAp1.5
Posterolateral cortical nucleusipsiPLCo2
Periamygdaloid complexipsiPAC1
Medial amygdaloid nucleusipsiMe3
Medial amygdaloid nucleus anterior partipsiMeAn0.5
Medial amygdaloid nucleus dorsal tipipsiMeDT-0.5
Amygdalohippocampal areaipsiAHi2
Posteromedial cortical nucleusipsiPMCo2
ClaustrumipsiCl1.5
Globus pallidusipsiGP0
Peripallidal regionipsiPePa2
Subpallidal regionipsiSuPa1
Ventral pallidumipsiVP-0.5
Accumbens nucleusipsiAc4
Accumbens nucleus anteromedial partipsiAcAM2
Accumbens nucleus coreipsiAcbC2
Lateral coreipsiAcbCl2
Rostral pole of the accumbens nucleusipsiAcbRP2
Accumbens nucleus shellipsiAcbSh4
Dorsomedial shellipsiAcbShdm-0.5
Lateral accumbens shellipsiAcbShl2
Medial accumbens shellipsiAcbShm3
Rostral accumbens shellipsiAcbShr2
Ventral shellipsiAcbShv2
Ventromedial shellipsiAcbShvm-0.5
Accumbens nucleus ventral regionsipsiAcV1
Lateral nucleus accumbensipsiAcl1
Medial accumbensipsiAcbM3
Medial two-thirds of the accumbens nucleusipsiAcbMtt4
Border between shell and core of the accumbens nucleusipsiAcbsc1
Caudate putamenipsiCPu3
Anterior striatumipsiAStri3
Anteromedial striatumipsiCPuam-0.5
Anteromedial margin of the striatumipsiCPuamm-0.5
Medial striatumipsiCPum-0.5
Medialmost caudate putamenipsiCPumm2
Dorsal striatumipsiCPud1
Rostral striatumipsiCPur-0.5
Striatal matrix compartmentipsiSMC-0.5
Striatal patch compartmentipsiSPC-0.5
Ventral striatumipsiCPuv2
Ventrolateral striatumipsiCPuvl2
Ventromedial striatumipsiCPuvm2
Fundus of the striatumipsiFS2
Cerebral cortexipsiCEC-0.5
HippocampusipsiHIPP3
Dentate gyrusipsiDG0
Ammon hornipsiAmH3
Field CA1 of hippocampusipsiCA11
SubiculumipsiS2
Subiculum dorsal partipsiSd-0.5
Subiculum ventral partipsiSv2
Subiculum ventral part caudal subdivisionipsiSvc0
Subiculum ventral part molecular layeripsiSvML1
Subiculum ventral part pyramidal layeripsiSvPy1
Posterior ventral subiculumipsiSpv-0.5
Ventral hippocampusipsiHIPPv3
Entorhinal cortexipsiEnt3
Lateral entorhinal cortexipsiLEnt1.5
Lateral entorhinal cortex layer 5ipsiLEntL51.5
Lateral entorhinal cortex layer 6ipsiLEntL61.5
Lateral entorhinal cortex ventral partipsiVLEA3
Lateral entorhinal cortex ventromedial partipsiVMEAL1
Entorhinal cortex layer 3ipsiEntL32
Entorhinal cortex layer 4ipsiEntL42
Piriform cortexipsiPir2
Prepiriform cortexipsiPRPIR1
Retrosplenial regionsipsiRS1
Cingulate cortexipsiCg3
Anterior cingulate cortexipsiACC1
Cingulate cortex area 1ipsiCg1-0.5
Cingulate cortex area 1 caudal partipsiCg1c-0.5
Cingulate cortex area 2ipsiCg2-0.5
Cingulate cortex area 2 caudal partipsiCg2c-0.5
Cingulate cortex area 3ipsiCg31
Dorsal anterior cingulate cortexipsiDACC2
Ventral anterior cingulate cortexipsiVACC1.5
Cingulumipsicg-0.5
Prelimbic cortexipsiPrL2
Prelimbic cortex layer 2ipsiPrLL23
Prelimbic cortex layer 3ipsiPrLL33
Prelimbic cortex layer 4ipsiPrLL43
Prelimbic cortex ventral partipsiPrLv2
Infralimbic cortexipsiIL3
Infralimbic cortex layer 2ipsiILL22
Infralimbic cortex layer 3ipsiILL32
Infralimbic cortex rostral partipsiILR2
Infralimbic cortex anterior part layer 5ipsiILAnL53
Infralimbic cortex anterior part layer 6ipsiILAnL63
Frontal association cortexipsiFrA4
Most ventral part of the pregenual part of the anteromedial cortexipsiFr2mvpg0
Parietal association cortexipsiPtA0
Frontal polar cortexipsiFP0
Frontal polar cortex lateral partipsiFPl0
Frontal polar cortex medial partipsiFPm2
Insular cortexipsiICX3
Agranular insular cortexipsiAI1
Agranular insular cortex dorsal partipsiAID2
Agranular insular cortex layer 1ipsiAIL11
Agranular insular cortex layer 3ipsiAIL32
Agranular insular cortex layer 4ipsiAIL42
Agranular insular cortex posterior partipsiAIP1
Agranular insular cortex rostral partipsiRAIC2
Agranular insular cortex ventral partipsiAIV1
Dysgranular insular cortexipsiDI-0.5
Granular insular cortexipsiGI0
Border region of the agranular and granular insular cortex ventral partipsiAGbGICXv3
Perirhinal cortexipsiA352
Ectorhinal cortexipsiA361
Prefrontal cortexipsiPFC4
Prefrontal cortex supragenual partipsisgPFC2
Pregenual sector of the prefrontal cortexipsipgPFC-0.5
Ventral part of the pregenual sector of the prefrontal cortexipsivpgPFC4
Dorsal part of the pregenual sector of the prefrontal cortexipsidpgPFC2
Lateral agranular prefrontal cortexipsiAGl0
Medial prefrontal cortexipsimPFC2
Medial prefrontal cortex layer 3ipsimPFCL33
Medial prefrontal cortex layer 4ipsimPFCL42
Medial prefrontal cortex layer 1ipsimPFCL13
Medial prefrontal cortex posterior partipsimPFCp2
Medial agranular prefrontal cortexipsiAGm-0.5
Primary somatosensory cortexipsiS10
Secondary somatosensory cortexipsiS22
Anterior medial frontal cortexipsiAMFC1
Lateral orbital cortexipsiLO2
Medial orbital cortexipsiMO3
Medial orbital cortex dorsal partipsiMOd2.5
Medial orbital cortex rostral partipsiMORo2
Ventral orbital cortexipsiVO2
Ventrolateral orbital areaipsiVLO-1
Ventrolateral orbital area posterior partipsiVLOp1
Anterior olfactory nucleusipsiAON1
Olfactory tubercleipsiTuO3
Olfactory tubercle lateral partipsiTuOL0.5
Olfactory tubercle deep layersipsiTuODL2
Olfactory tubercle medial partipsiTuOMP0.5
Septal regionipsiSER1
Dorsal medial septumipsiDMS-1
Lateral septal nucleusipsiLS1
Lateral septal nucleus rostral partipsiLSr-0.5
Lateral septal nucleus ventral partipsiLSV3
Ventral medial septumipsiVMSe1
Intermediomedial cell column C1ipsiIMMC1-0.5
Dorsal horn C1ipsiDHC1-0.5
Dorsal horn C2ipsiDHC2-0.5
Cervical segment 7ipsiCS7-1

Input from

NameSideAbbr.WeightDetails
Deep mesencephalic nucleuscontraDpMe0.5
Intermediate hypothalamic cell groupscontraIHCG-0.5
Medial preoptic areacontraMPA-0.5
Medial preoptic nucleuscontraMPO-0.5
Dorsomedial hypothalamic nucleuscontraDMHy-0.5
Anterior hypothalamic areacontraAHA-0.5
Anterior hypothalamic area immediately caudal to the suprachiasmatic areacontraAHAcSCh-0.5
Anterior hypothalamic nucleuscontraAHn-2
Dorsal hypothalamic areacontraDA-0.5
Ventromedial hypothalamic nucleuscontraVMH-0.5
Ventromedial hypothalamic nucleus central partcontraVMHC0.5
Ventromedial hypothalamic nucleus ventrolateral partcontraVMHVL-0.5
Paraventricular hypothalamic nucleuscontraPa-0.5
Preoptic periventricular nucleuscontraPePO-0.5
Suprachiasmatic nucleuscontraSCh2
Suprachiasmatic nucleus dorsal divisioncontraSChd-0.5
Suprachiasmatic nucleus dorsomedial partcontraSCnDM-0.5
Suprachiasmatic nucleus ventrolateral partcontraSCnVL-0.5
Region dorsal to suprachiasmatic nucleuscontraSChDT-0.5
Suprachiasmatic preoptic nucleuscontraPSCh-0.5
Retrochiasmatic area immediately caudal to the suprarchiasmatic areacontraRChcSCh-0.5
Reticular thalamic nucleuscontraRt-0.5
Caudal part of reticular thalamic nucleus rostral partcontraRtrC1
Ventral part of reticular thalamic nucleus rostral partcontraRtrVe1.5
Centromedial part of the rostral reticular thalamic nucleuscontraRtrCM-0.5
Caudal part of reticular thalamic nucleus ventromedial partcontraRtvmC1.5
Bed nucleus of the stria terminalis medial division posterior partcontraBSTMP-0.5
Subiculum ventral partcontraSv1
Agranular insular cortex rostral partcontraRAIC1
Lateral septal nucleus caudal partcontraLSc2
Cervical segment 1contraCS14
Cervical segment 2contraCS24
Cervical segment 3contraCS33
Cervical segment 4contraCS42
Cervical segment 5contraCS52
Cervical segment 6contraCS61
Cervical segment 7contraCS72
Cervical segment 8contraCS82
Thoracal segment 1contraT11
Thoracal segment 2contraT21
Thoracal segment 3contraT31
Thoracal segment 4contraT40.5
Thoracal segment 5contraT50.5
Thoracal segment 6contraT60.5
Thoracal segment 7contraT71
Thoracal segment 8contraT80.5
Thoracal segment 9contraT92
Thoracal segment 10contraT102
Thoracal segment 11contraT112
Thoracal segment 12contraT121
Thoracal segment 13contraT131
Lumbar segment 1contraL13
Lumbar segment 2contraL23
Lumbar segment 3contraL33
Lumbar segment 4contraL42
Lumbar segment 5contraL52
Lumbar segment 6contraL63
Sacral segment 1contraSa13
Sacral segment 2contraSa23
Sacral segment 3contraSa31
Sacral segment 4contraSa41
Coccygeal segment 1contraCo11
Coccygeal segment 2contraCo21
Coccygeal segment 3contraCo31
MesencephalonipsiMEC0
Central grayipsiCG3
Paralemniscal nucleusipsiPL0
Interstitial nucleus of medial longitudinal fasciculusipsiIMLF1
Nucleus of DarkschewitschipsiDk2
Periaqueductal grayipsiPAG2
Lateral periaqueductal grayipsiLPAG1
Periaqueductal gray dorsal partipsiPAGd1
Periaqueductal gray rostrolateral partipsiPAGRL1
Ventral periaqueductal grayipsiVPAG2
Periventricular gray matteripsiPVG0
Superior colliculus lateral partipsiSCL3
Tegmental areaipsiTGA2
Central tegmental fieldipsiTGAC0
Subpeduncular tegmental nucleusipsiSPTg1
Substantia nigra A9ipsiSN1
Substantia nigra compact partipsiSNC1
Substantia nigra reticular partipsiSNR1
Ventral tegmental area A10ipsiVTA1
Parabrachial pigmented nucleusipsiPBP0
Caudal linear nucleus of the rapheipsiCLi1
Laterodorsal tegmental nucleusipsiLDTg2
Dorsal tegmental nucleusipsiDTg3
Pedunculopontine tegmental nucleusipsiPPTg0
Interstitial nucleus of CajalipsiInC-0.5
A5 noradrenaline cellsipsiA50
Barringtons nucleusipsiBar0
Locus coeruleusipsiLC4
Nucleus incertusipsiNI0
Nucleus incertus pars compactaipsiNIc3
Dorsomedial tegmental areaipsiDMTg1
Prepositus nucleusipsiPr0
Intermediate reticular nucleusipsiIRt0
Deep mesencephalic nucleusipsiDpMe1
Pontine reticular nucleus oral partipsiPnO0
Pontine reticular nucleus ventral partipsiPnV0
Pontine reticular nucleus caudal partipsiPNC0
Cuneiforme nucleusipsiCnF0
Parabrachial nucleusipsiPB3
Gigantocellular reticular nucleusipsiGi-0.5
Gigantocellular reticular nucleus alpha partipsiGiA0
Lateral reticular nucleusipsiLRt2
Medullary reticular nucleusipsiMdD0
Subnucleus reticularis dorsalisipsiSRD0
Medullary reticular nucleus ventral partipsiMdV0
Parvicellular reticular nucleusipsiPCRt0
Subcoeruleus nucleusipsiSubC0
Mesencephalic trigeminal nucleusipsiMe53
Principal sensory trigeminal nucleusipsiPr50
Spinal trigeminal nucleus caudal partipsiSp5C0
Spinal trigeminal nucleus interpolar partipsiSp5I0
Spinal trigeminal nucleus oral partipsiSp5O0
Vestibular nucleiipsiVnc0
Nucleus of the solitary tractipsiSol1
Parasolitary nucleusipsiPSol0
Dorsal motor nucleus of vagusipsi100
Raphe nucleiipsiRAN-0.5
Dorsal raphe nucleusipsiDR2
Dorsal raphe nucleus caudal partipsiDRC3
Dorsal raphe nucleus dorsal partipsiDRD3
Dorsal raphe nucleus ventral partipsiDRV2
Dorsal raphe nucleus ventrolateral partipsiDRVL2
Rostral linear nucleus of the rapheipsiRLi0
Median raphe nucleusipsiMnR2
Superior central raphe nucleusipsiCS1
Paramedian raphe nucleusipsiPMnR0
Pontine raphe nucleusipsiPnR1
Raphe interpositus nucleusipsiRIP0
Raphe magnus nucleusipsiRMg1
Raphe obscurus nucleusipsiROb1
Raphe pallidus nucleusipsiRPa0
Rostral ventrolateral medullaipsiRVLM0
Cuneate nucleusipsiCu0
Gracile nucleus principal partipsiGr0
Inferior oliveipsiIO1
Paragigantocellular reticular nucleusipsiPGi2
Dorsal paragigantocellular nucleusipsiDPGi-0.5
Lateral paragigantocellular nucleusipsiLPGi0
Diagonal band of BrocaipsiDBB2
Nucleus of the horizontal limb of the diagonal bandipsiHDB2
Lateral part of the nucleus of the horizontal limb of the diagonal bandipsiLPHDB0
Nucleus of the vertical limb of the diagonal bandipsiVDB2
Nucleus of the vertical limb of the diagonal band lateral partipsiVDBL2
Medial septal nucleusipsiMS2
Medial septal nucleus medial partipsiMSm-0.5
Substantia innominataipsiSI2
Intermediate hypothalamic cell groupsipsiIHCG2.5
Lateral preoptic areaipsiLPO2
Medial preoptic areaipsiMPA4
Medial preoptic area periventricular partipsiMPApv1
Medial preoptic area rostral partipsiMPAR2
Medial preoptic area dorsolateral partipsiMPADL2
Medial preoptic nucleusipsiMPO1
HypothalamusipsiHYPO-0.5
Dorsomedial hypothalamic nucleusipsiDMHy1
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC3
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR2
Lateral hypothalamic area anterior part [Preoptic anterior region]ipsiLHAapar0
Lateral hypothalamic area posterior part [Preoptic anterior region]ipsiLHApPAR0
Lateral hypothalamic area premammillary subfornical region [Preoptic anterior region]ipsiLHAsfp0
Lateral zoneipsiLHA-0.5
Lateral hypothalamic areaipsiLH1
Lateral hypothalamic area anterior partipsiLHAa-0.5
Lateral hypothalamic area juxtadorsomedial regionipsiJDM2
Lateral hypothalamic area motor related juxtaventromedial regionipsiLHAjvm2
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd2
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv2
Lateral hypothalamic area subfornical region anterior zoneipsiLHAsfa2
Lateral hypothalamic area perifornical partipsiPFx1
Lateral hypothalamic area posterior partipsiLHAp2
Tuberal division of the lateral hypothalamic areaipsiLHTC-0.5
Anterior hypothalamic areaipsiAHA3
Anterior hypothalamic area central partipsiAHAC-2
Anterior hypothalamic nucleus ventromedial partipsiAHAvm1
Anterior hypothalamic area immediately caudal to the suprachiasmatic areaipsiAHAcSCh4
Anterior hypothalamic nucleusipsiAHn-0.5
Anterior part of the anterior hypothalamic nucleusipsiAHna-2
Dorsal hypothalamic areaipsiDA1
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM1
Posterior hypothalamic areaipsiPHA3
Midlateral posterior hypothalamic areaipsiPHAmL-0.5
Subparaventricular zoneipsiSuPZ-0.5
Lateral part of ventral subparaventricular zoneipsiSuPZvL2
Subparaventricular zone ventromedial partipsiSuPZvm2
Subparaventricular zone dorsomedial partipsiSuPZdm1
Subparaventricular zone dorsolateral partipsiSuPZdL2
Ventromedial hypothalamic nucleusipsiVMH1
Ventromedial hypothalamic nucleus central partipsiVMHC-0.5
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL1
Paraventricular hypothalamic nucleusipsiPa1
Paraventricular hypothalamic nucleus periventricular partipsiPapv3
Paraventricular hypothalamic nucleus surrounding regionipsiPaSurr3
Preoptic periventricular nucleusipsiPePO4
Subparaventricular zone of the hypothalamus perisuprachiasmatic regionipsiSBPVps1
Suprachiasmatic nucleusipsiSCh3
Suprachiasmatic nucleus dorsal divisionipsiSChd4
Suprachiasmatic nucleus dorsomedial partipsiSCnDM3
Suprachiasmatic nucleus ventral divisionipsiSChv2
Suprachiasmatic nucleus ventrolateral partipsiSCnVL3
Region dorsal to suprachiasmatic nucleusipsiSChDT4
Suprachiasmatic nucleus shell regionipsiSChS-0.5
Suprachiasmatic nucleus core regionipsiSChCo-0.5
Suprachiasmatic preoptic nucleusipsiPSCh4
Incerto hypothalamic areaipsiicHYPO1
Lateral mammillary nucleusipsiLM3
Medial mammillary nucleusipsiMMn3
Premammillary nucleus dorsal partipsiPMD0.5
Supramammillar nucleusipsiSuM-0.5
A8 dopamine cells retrorubral groupipsiRRF0
Perifornical nucleusipsiPeF0
Perifornical nucleus medial partipsiPeFM-2
Basal retrochiasmatic areaipsiBRCh1
Retrochiasmatic area lateral partipsiRChL-2
Retrochiasmatic area immediately caudal to the suprarchiasmatic areaipsiRChcSCh4
ThalamusipsiT-0.5
Rhomboid thalamic nucleusipsiRh-0.5
Mediodorsal thalamic nucleusipsiMD-0.5
Paratenial thalamic nucleusipsiPT0
Paraventricular thalamic nucleus anterior partipsiPVA0
Paraventricular thalamic nucleus caudal partipsiPVca1
Paraventricular thalamic nucleus dorsal partipsiPVdo1
Paraventricular thalamic nucleus posterior partipsiPVP0
Paraventricular thalamic nucleus rostral partipsiPVr1
Paraventricular thalamic nucleus ventral partipsiPVV1
Reuniens thalamic nucleusipsiRe1
Reticular thalamic nucleusipsiRt1
Reticular thalamic nucleus medial partipsiRtm3
Reticular thalamic nucleus rostral partipsiRtr1.5
Caudal part of reticular thalamic nucleus rostral partipsiRtrC1
Medial subdivision of the rostral part of the reticular thalamic nucleusipsiRtrM-0.5
Ventral part of reticular thalamic nucleus rostral partipsiRtrVe-0.5
Reticular thalamic nucleus rostroventral partipsiRtrv2
Reticular thalamic nucleus ventral partipsiRtV3
Reticular thalamic nucleus ventromedial partipsiRtvm2
Subparafascicular thalamic nucleusipsiSPF1
Subparafascicular thalamic nucleus rostral partipsiSPFr1
Zona incertaipsiZI3
Pretectal regionipsiPRT1
Anterior basomedial nucleusipsiBMA0.5
Bed nucleus of the stria terminalisipsiBST2
Bed nucleus of the stria terminalis anterior division dorsomedial nucleusipsiBSTdm1
Bed nucleus of the stria terminalis anterior medial partipsiBSTAM2
Bed nucleus of the stria terminalis anterior ventral areaipsiBSTAV1
Bed nucleus of the stria terminalis magnocellular nucleusipsiBSTmc1
Bed nucleus of the stria terminalis lateral divisionipsiBSTL-1
Bed nucleus of the stria terminalis lateral division dorsal partipsiBSTLD-0.5
Bed nucleus of the stria terminalis medial divisionipsiBSTM-0.5
Bed nucleus of the stria terminalis medial division posterior partipsiBSTMP-0.5
Bed nucleus of the stria terminalis posterior divisionipsiBSTP-0.5
Bed nucleus of the stria terminalis ventral tipipsiBNSTvt2
Anterior cortical amygdaloid nucleusipsiACo2
Posterior amygdaloid nucleusipsiCOAp0.5
Posterolateral cortical nucleusipsiPLCo1
Medial amygdaloid nucleusipsiMe2
Medial amygdaloid nucleus anterodorsal partipsiMeAD0.5
Amygdalohippocampal areaipsiAHi2
ClaustrumipsiCl1
Peripallidal regionipsiPePa3
Subpallidal regionipsiSuPa2
Ventral pallidumipsiVP3
Accumbens nucleusipsiAc3
Accumbens nucleus coreipsiAcbC-0.5
Medial accumbensipsiAcbM-0.5
Anteroventral segment of the striatumipsiCPuav-0.5
Bed nucleus of the anterior commissureipsiBAC0
HippocampusipsiHIPP-0.5
Dorsal hippocampusipsiHIPPd3
Hilus of the dentate gyrusipsiHil0
Field CA1 of hippocampusipsiCA10
Field CA1 of hippocampus ventral poleipsiCA1vp0.5
Field CA2 of hippocampusipsiCA20
Field CA3 of hippocampusipsiCA30
Subiculum dorsal partipsiSd-0.5
Subiculum dorsal halfipsiSdh3
Subiculum ventral partipsiSv2
Subiculum ventral halfipsiSvh0.5
Subiculum ventral part polymorph layeripsiSvPM1
Fornixipsif3
Lamina principalis externa of the presubiculumipsiPrSLpe1
Lamina principalis interna of the presubiculumipsiPrSLpi3
Dorsal one half of the lamina principalis interna of the presubiculumipsiPrSdhLpi0.5
Lateral entorhinal cortexipsiLEnt1
Entorhinal cortex layer 4ipsiEntL4-2
Limbic regionsipsiLR-0.5
Anterior cingulate cortexipsiACC3
Cingulate cortex area 1 caudal partipsiCg1c0.5
Cingulate cortex area 2 caudal partipsiCg2c0.5
Cingulate cortex agranular partipsiCgag3
Prelimbic cortexipsiPrL3
Prelimbic cortex dorsal partipsiPrLd1
Prelimbic cortex layer 6ipsiPrLL63
Prelimbic cortex ventral partipsiPrLv3
Infralimbic cortexipsiIL3
Infralimbic cortex rostral partipsiILR2.5
Frontal cortex area 2ipsiFr21
Insular cortexipsiICX-0.5
Agranular insular cortexipsiAI-0.5
Agranular insular cortex rostral partipsiRAIC2
Granular insular cortexipsiGI2
Dorsal peduncular cortexipsiDP1
Prefrontal cortexipsiPFC3
Medial prefrontal cortexipsimPFC2
Medial prefrontal cortex layer 5ipsimPFCL53
Medial prefrontal cortex layer 6ipsimPFCL63
Medial agranular prefrontal cortexipsiAGm1
Ventral medial prefrontal cortexipsivmPFC-0.5
Orbital cortexipsiOrC-0.5
Medial orbital cortexipsiMO3
Ventral orbital cortexipsiVO3
Ventral lateral geniculate nucleusipsiVLG1
Interpeduncular nucleusipsiIP1
Septal regionipsiSER-0.5
Dorsal medial septumipsiDMS0
Dorsolateral septumipsiDLSER0
Lateral septal nucleusipsiLS-0.5
Lateral septal nucleus caudal partipsiLSc-0.5
Lateral septal nucleus rostral part dorsolateral zoneipsiLSrdl3
Ventrally lateral septal nucleus rostral part medial zoneipsiLSrmV2
Septofimbrial nucleusipsiSFi-0.5
Ventral medial septumipsiVMSe2
Ventrolateral septal regionipsiVLSER0
Caudoventral septal regionipsiCVSER-2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





Homepage | Staff | neuroVIISAS | Rat connectome | Other connectomes | Neuroimaging | Neurodegeneration | Students | Links | Publications