University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Thymus left


Abbreviation
Thym
Color       
Superior regionsImmune system

SynonymsAbbr.Language
ThymusThymEng

Input from

NameSideAbbr.WeightDetails
Dorsal medullary tegmentumipsiDMeTe1
A5 noradrenaline cellsipsiA5-0.5
Locus coeruleusipsiLC-0.5
Pontine reticular nucleusipsiPRN-0.5
Pontine reticular nucleus oral partipsiPnO-0.5
Gigantocellular reticular nucleusipsiGi2
Gigantocellular reticular nucleus anterior partipsiGiAn2
Gigantocellular reticular nucleus ventral partipsiGiV3
Subcoeruleus nucleus dorsal partipsiSubCD-0.5
Subcoeruleus nucleus ventral partipsiSubCV-0.5
Ambiguus nucleusipsiAmb3
Ambiguus nucleus compact partipsiAmbC-0.5
Dorsal motor nucleus of vagusipsi100.5
Caudal raphe nucleiipsiRANc3
Rostral ventrolateral medullaipsiRVLM2
Lateral paragigantocellular nucleusipsiLPGi1
Retroambiguus nucleusipsiRAmb-0.5
Retrofacial nucleusipsiRFN3
Ventromedial medulla oblongataipsiMeObvm-0.5
Tuberomammillary nucleusipsiTuM-0.5
Lateral hypothalamic areaipsiLH3
Dorsomedial hypothalamic areaipsiDMHyA1
Posterior hypothalamic areaipsiPHA1
Ventromedial hypothalamic nucleusipsiVMH-0.5
Arcuate nucleusipsiArc1
Paraventricular hypothalamic nucleus lateral partipsiPaLa3
Paraventricular hypothalamic nucleusipsiPa2
Paraventricular nucleus anterior partipsiPaan1
Paraventricular nucleus dorsal partipsiPaDo2
Paraventricular nucleus medial partipsiPame2
Paraventricular nucleus posterior partipsiPaPos1
Retrochiasmatic areaipsiRCh1
Dorsal root ganglion C1ipsiDRGC13
Spinal cord layer 5 medial part C1ipsiSCL5mpC11
Dorsal root ganglion C2ipsiDRGC23
Spinal cord layer 5 medial part C2ipsiSCL5mpC21
Dorsal root ganglion C3ipsiDRGC33
Spinal cord layer 5 lateral part C3ipsiSCL5lpC33
Spinal cord layer 5 medial part C3ipsiSCL5mpC31.5
Dorsal root ganglion C4ipsiDRGC43
Spinal cord layer 5 lateral part C4ipsiSCL5lpC41.5
Spinal cord layer 5 medial part C4ipsiSCL5mpC41.5
Dorsal root ganglion C5ipsiDRGC53
Dorsal root ganglion C6ipsiDRGC63
Dorsal root ganglion C7ipsiDRGC73
Central autonomic area of thoracal segment 1ipsiCAAT13
Intercalated nucleus T1ipsiICLT11
Intermediolateral cell column T1ipsiIMLT13
Lateral funiculus of thoracal segment 1ipsiLfT1-0.5
Central autonomic area of thoracal segment 2ipsiCAAT23
Intercalated nucleus T2ipsiIClT23
Intermediolateral cell column T2ipsiIMLT23
Lateral funiculus of thoracal segment 2ipsiLfT2-0.5
Central autonomic area of thoracal segment 3ipsiCAAT32
Intercalated nucleus T3ipsiIClT32
Intermediolateral cell column T3ipsiIMLT32
Lateral funiculus of thoracal segment 3ipsiLfT3-0.5
Central autonomic area of thoracal segment 4ipsiCAAT42
Intercalated nucleus T4ipsiIClT41
Intermediolateral cell column T4ipsiIMLT42
Lateral funiculus of thoracal segment 4ipsiLfT4-0.5
Central autonomic nucleus of thoracal segment 5ipsiCAAT52
Intercalated nucleus T5ipsiIClT52
Intermediolateral cell column T5ipsiIMLT51
Lateral funiculus of thoracal segment 5ipsiLfT5-0.5
Central autonomic nucleus of thoracal segment 6ipsiCAAT61
Intercalated nucleus T6ipsiIClT61
Intermediolateral cell column T6ipsiIMLT61
Lateral funiculus of thoracal segment 6ipsiLfT6-0.5
Central autonomic nucleus of thoracal segment 7ipsiCAAT71
Intercalated nucleus T7ipsiIClT71
Intermediolateral cell column T7ipsiIMLT71
Lateral funiculus of thoracal segment 7ipsiLfT7-0.5
A5 noradrenaline cellscontraA5-0.5
Locus coeruleuscontraLC-0.5
Pontine reticular nucleuscontraPRN-0.5
Pontine reticular nucleus oral partcontraPnO-0.5
Subcoeruleus nucleus dorsal partcontraSubCD-0.5
Subcoeruleus nucleus ventral partcontraSubCV-0.5
Ambiguus nucleuscontraAmb3
Dorsal motor nucleus of vaguscontra100.5
Retroambiguus nucleuscontraRAmb-0.5
Retrofacial nucleuscontraRFN3
Dorsal root ganglion C1contraDRGC13
Dorsal root ganglion C2contraDRGC23
Dorsal root ganglion C3contraDRGC33
Dorsal root ganglion C4contraDRGC43
Dorsal root ganglion C5contraDRGC53
Dorsal root ganglion C6contraDRGC63
Dorsal root ganglion C7contraDRGC73
Central autonomic area of thoracal segment 1contraCAAT13
Intercalated nucleus T1contraICLT11
Intermediolateral cell column T1contraIMLT13
Central autonomic area of thoracal segment 2contraCAAT23
Intercalated nucleus T2contraIClT23
Intermediolateral cell column T2contraIMLT23
Central autonomic area of thoracal segment 3contraCAAT32
Intercalated nucleus T3contraIClT32
Intermediolateral cell column T3contraIMLT32
Central autonomic area of thoracal segment 4contraCAAT42
Intercalated nucleus T4contraIClT41
Intermediolateral cell column T4contraIMLT42
Intercalated nucleus T5contraIClT52
Intermediolateral cell column T5contraIMLT51
Central autonomic nucleus of thoracal segment 5contraCAAT52
Intercalated nucleus T6contraIClT61
Intermediolateral cell column T6contraIMLT61
Central autonomic nucleus of thoracal segment 6contraCAAT61
Intercalated nucleus T7contraIClT71
Intermediolateral cell column T7contraIMLT71
Central autonomic nucleus of thoracal segment 7contraCAAT71
Superior cervical ganglionipsiAutoSCeG-0.5
Thoracic sympathetic ganglion at level T 1ipsiAutoTSG1-0.5
Thoracic sympathetic ganglion at level T 2ipsiAutoTSG2-0.5
Thoracic sympathetic ganglion at level T 3ipsiAutoTSG3-0.5
Superior ganglion of the vagus nerveipsiAutoParGSup-0.5
Nodose ganglionipsiAutoNoG3
Nodose ganglioncontraAutoNoG3

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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