University of Rostock

Department of Anatomy

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Rat connectome



Subcoeruleus nucleus dorsal part left


Abbreviation
SubCD
Color       
Superior regionsSubcoeruleus nucleus

SynonymsAbbr.Language
Subcoeruleus nucleus dorsal partSubCDEng
Subceruleus nucleus dorsal part  
Dorsosubcoeruleus nucleus Eng

Output to

NameSideAbbr.WeightDetails
Central grayipsiCG-0.5
Central gray pons partipsiCGP1
Medial accessory oculomotor nucleusipsiMA3-0.5
Inferior colliculusipsiICOL-0.5
Superior colliculusipsiSC1
Dorsal tegmental decussationipsidtgx2
Subpeduncular tegmental nucleusipsiSPTg1
Substantia nigra compact partipsiSNC-0.5
Substantia nigra reticular partipsiSNR-0.5
Retrorubral nucleusipsiRR2
Laterodorsal tegmental nucleusipsiLDTg2
Pedunculopontine tegmental nucleusipsiPPTg2
Edinger Westphal nucleusipsiEW-0.5
Superior cerebellar peduncleipsisucep-0.5
Locus coeruleusipsiLC2
Reticulotegmental nucleus of the ponsipsiRtTg1
Prepositus nucleusipsiPr1.5
Intermediate reticular nucleusipsiIRt2
Rostroventrolateral reticular nucleusipsiRVL2
Deep mesencephalic nucleusipsiDpMe1
Pontine reticular nucleus oral partipsiPnO2
Pontine reticular nucleus caudal partipsiPNC2
Cuneiforme nucleusipsiCnF2
Lateral parabrachial nucleusipsiLPB1
Lateral parabrachial nucleus internal partipsiLPBI3
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi2
Subcoeruleus nucleusipsiSubC2
Motor trigeminal nucleusipsiMo51
Spinal vestibular nucleusipsiSpVe1
Vestibular nucleiipsiVnc2
Superior vestibular nucleus rostral poleipsiSuVeR2
Medial vestibular nucleusipsiMVe2
Rostral lateral vestibular nucleus alpha partipsiLVNaR2
Rostral part of lateral vestibular nucleus beta partipsiLVNbR2
Dorsal motor nucleus of vagusipsi101
Dorsal raphe nucleusipsiDR2
Dorsal raphe nucleus dorsal partipsiDRD3
Dorsal raphe nucleus lateral wingipsiDRlw2
Dorsal raphe nucleus rostral partipsiDRr2
Dorsal raphe nucleus ventral partipsiDRV2
Median raphe nucleusipsiMnR2
Lateral paragigantocellular nucleusipsiLPGi1.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm-0.5
Endopiriform systemipsiEnN-0.5
Caudal endopiriform regionipsiCEn-0.5
Medial preoptic areaipsiMPA-0.5
Tuberomammillary nucleusipsiTuM-0.5
Lateral hypothalamic nucleusipsiLHN-0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM-0.5
Posterior hypothalamic nucleusipsiPH-0.5
Ventromedial hypothalamic nucleusipsiVMH-0.5
Mammillary bodyipsiCMAM-0.5
Premammillary nucleusipsiPMAN-0.5
Central medial thalamic nucleusipsiCM2
Mediodorsal thalamic nucleusipsiMD1
Intermediodorsal thalamic nucleusipsiIMD2
Paraventricular thalamic nucleusipsiPV2
Ventrobasal complexipsiVB1
Ventral posterolateral thalamic nucleusipsiVPL1
Reticular thalamic nucleusipsiRt2
Zona incertaipsiZI2
Basolateral amygdaloid nucleusipsiBL1
Lateral amygdaloid nucleusipsiLA1
Central amygdaloid nucleusipsiCe2
Central amygdaloid nucleus lateral divisionipsiCeL1
Central amygdaloid nucleus medial divisionipsiCeM2
Amygdalopiriform transition areaipsiAPir-0.5
Amygdalohippocampal areaipsiAHi2
Posteromedial cortical nucleusipsiPMCo2
Dentate gyrusipsiDG2
Field CA1 of hippocampusipsiCA12
Field CA2 of hippocampusipsiCA22
Field CA3 of hippocampusipsiCA32
Entorhinal cortex rostral partipsiEntRo-0.5
Caudal entorhinal field 1ipsiCEnt1-0.5
Primary visual cortexipsiV1-0.5
Interpeduncular nucleusipsiIP-0.5
Interpeduncular nucleus rostral subnucleus central partipsiIPRce1
Ventral horn C1ipsiVHC1-0.5
Ventral horn C2ipsiVHC2-0.5
Ventral horn C3ipsiVHC3-0.5
Dorsal raphe nucleus lateral wingcontraDRlw2
Medial preoptic areacontraMPA-0.5
Dentate gyruscontraDG1.5
Field CA1 of hippocampuscontraCA11.5
Field CA2 of hippocampuscontraCA21.5
Field CA3 of hippocampuscontraCA31.5
Ventral horn C1contraVHC1-0.5
Ventral horn C2contraVHC2-0.5
Ventral horn C3contraVHC3-0.5
Sympathetic nervous systemipsiSNS1
Parasympathetic nervous systemipsiPaNS2
Lumbar epaxial musclesipsiMuscLep-10
PenisipsiOrgPenis-0.5
ThymusipsiThym-0.5
SpleenipsiOrgSPL3
ThymuscontraThym-0.5
SpleencontraOrgSPL-0.5

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG2
Nuclei of the lateral lemniscusipsiNLL2
Dorsolateral periaqueductal gray caudal partipsiPAGdlc2
Dorsolateral periaqueductal gray rostral partipsiPAGdlr3
Ventrolateral periaqueductal grayipsiVLPAG3
Ventrolateral periaqueductal gray caudal partipsiPAGvlc2
Ventrolateral periaqueductal gray rostral partipsiPAGvlr2
Superior colliculusipsiSC2
Rostral mesencephalic reticular formationipsiRMRf2
Pontine reticular nucleus caudal partipsiPNC2
Parabrachial nucleusipsiPB2
Gigantocellular reticular nucleus alpha partipsiGiA2
Parvicellular reticular nucleusipsiPCRt1
Nucleus of the solitary tract rostral partipsiSolro1
Ventral part of the rostral nucleus of the solitary tractipsiSolroV1
Nucleus of the solitary tract rostrocentralipsiSolroc1
Paragigantocellular reticular nucleusipsiPGi2
Dorsomedial hypothalamic nucleusipsiDMHy3
Perifornical hypothalamic area [Preoptic anterior region]ipsiPFxPAR2
Lateral hypothalamic area dorsal partipsiLHd0.5
Lateral hypothalamic area ventral partipsiLHAvp2
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM3
Dorsomedial hypothalamic nucleus anterior partipsiDMA2
Periventricular zoneipsiPVZ1
Medial part of the caudal perifornical areaipsiPeFCM2
Lateral part of the caudal perifornical areaipsiPeFCL1
Central graycontraCG1
Nuclei of the lateral lemniscuscontraNLL1
Dorsolateral periaqueductal gray caudal partcontraPAGdlc0.5
Dorsolateral periaqueductal gray rostral partcontraPAGdlr1
Ventrolateral periaqueductal graycontraVLPAG2
Ventrolateral periaqueductal gray caudal partcontraPAGvlc0.5
Ventrolateral periaqueductal gray rostral partcontraPAGvlr0.5
Superior colliculuscontraSC1
Rostral mesencephalic reticular formationcontraRMRf1
Pontine reticular nucleus caudal partcontraPNC1
Parabrachial nucleuscontraPB1
Gigantocellular reticular nucleus alpha partcontraGiA1
Parvicellular reticular nucleuscontraPCRt0.5
Nucleus of the solitary tract rostral partcontraSolro0.5
Ventral part of the rostral nucleus of the solitary tractcontraSolroV0.5
Nucleus of the solitary tract rostrocentralcontraSolroc0.5
Paragigantocellular reticular nucleuscontraPGi1
Dorsomedial hypothalamic nucleuscontraDMHy0
Perifornical hypothalamic area [Preoptic anterior region]contraPFxPAR-0.5
Lateral hypothalamic area dorsal partcontraLHd-0.5
Lateral hypothalamic area ventral partcontraLHAvp-0.5
Dorsomedial hypothalamic nucleus [Medial zone]contraDM-0.5
Periventricular zonecontraPVZ-0.5
Medial part of the caudal perifornical areacontraPeFCM-0.5
Lateral part of the caudal perifornical areacontraPeFCL-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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