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Rat connectome



Tuberomammillary nucleus left


Abbreviation
TuM
Color       
Superior regionsTuberomammillar system

SynonymsAbbr.Language
Bed nucleus of the medial forebrain bundel  
alpha-Gruppe  
alpha group  
Nucleus tuberomamillaris  
Nucleus tuberomamillaris hypothalami  
Tubero mamillary area  
Mammilloinfundibular nucleus  
Tuberomamillary nucleusTM 
Tuberomammillary nucleusTuMEng
Histaminergic neurons of the posterior hypothalamus Eng
Nucleus hypothalamicus lateralis  
Nucleus tuberomammillaris Lat
Tuberomammillary hypothalamic nucleus  
Tuberal magnocellular nucleusTMCEng
Lateral hypothalamic nucleus  
Tubermammillary nucleus Eng
 TMNEng
Area of the tuberomamillary nucleus Eng

SubregionsSide
Dorsal tuberomammillary nucleusleft
Tuberomammillary nucleus diffuse partleft
Tuberomammillary nucleus dorsomedial partleft
Tuberomammillary nucleus lateral partleft
Tuberomammillary nucleus medial partleft
Tuberomammillary nucleus principal partleft
Tuberomammillary nucleus ventrolateral partleft
Ventral tuberomammillary nucleusleft
Glia limitans ventral to the ventral tuberomammillary nucleusleft
Caudal tuberomammillary nucleusleft
Posterior subdivision of the tuberomammillary nucleusleft
Tuberomammillary nucleus tuberal partleft
Tuberomammillary nucleus interstitial partleft
Near the cell dense region of the tuberomammillary nucleusleft
Ventrocaudal part of the tuberomammillary nucleusleft
Histaminergic cell bridges between tuberomammillary nucleus and the rostral tip of the central medial thalamic nucleusleft

Output to

NameSideAbbr.WeightDetails
Central gray dorsolateral partipsiCGDL2
Nuclei of the lateral lemniscusipsiNLL1
Periaqueductal grayipsiPAG-0.5
Ventrolateral periaqueductal grayipsiVLPAG1
Inferior colliculusipsiICOL-0.5
Superior colliculusipsiSC2
Superior colliculus deep layersipsiSCd3
Central tegmental field dorsal partipsiTGACd0
Mesopontine tegmental area caudal partipsiTGAmc1
Mesopontine tegmental area mid-levelipsiTGAmm1
Mesopontine tegmental area rostral partipsiTGAmr0
Substantia nigra lateral partipsiSNL-0.5
Substantia nigra medial partipsiSNM-0.5
Laterodorsal tegmental nucleusipsiLDTg1
Ventral tegmental nucleusipsiVTg1
Dorsal tegmental nucleusipsiDTg1
Pedunculopontine tegmental nucleusipsiPPTg1
Pedunculopontine tegmental nucleus caudal partipsiPPTgC1
Pedunculopontine tegmental nucleus mid levelipsiPPTgmL1
Pedunculopontine tegmental nucleus rostral partipsiPPTgR0
CerebellumipsiCERE1
Cerebellar lobule 2ipsiCERL21
Cerebellar lobule 3ipsiCERL31
Interposed cerebellar nucleiipsiICN1
Barringtons nucleusipsiBar1
Locus coeruleusipsiLC1
Locus coeruleus caudal partipsiLCca1
Locus coeruleus rostral partipsiLCRo1
Pericoerulear regionipsiPCR0.5
Pontine sublaterodorsal nucleusipsiPsLdn0.5
Pontine nucleiipsiPn1
Pontine reticular nucleusipsiPRN2
Lateral parabrachial nucleusipsiLPB1
Gigantocellular reticular nucleusipsiGi2
Parvicellular reticular nucleusipsiPCRt0.5
Around mesencephalic trigeminal nucleusipsiMe5A-0.5
Mesencephalic trigeminal nucleusipsiMe50.5
Mesencephalic trigeminal nucleus medial partipsiperiMe50.5
Medial vestibular nucleusipsiMVe0.5
Lateral vestibular nucleusipsiLVe2
Nucleus of the solitary tractipsiSol2
Dorsal raphe nucleusipsiDR1
Dorsal raphe nucleus caudal partipsiDRC0.5
Dorsal raphe nucleus central partipsiDRcep1
Dorsal raphe nucleus lateral wingipsiDRlw0.5
Ventral part of the dorsal raphe nucleus lateral wingipsiDRvlw1
Dorsal raphe nucleus median partipsiDRM1
Dorsal raphe nucleus rostral partipsiDRr1
Median raphe nucleusipsiMnR3
Raphe magnus nucleusipsiRMg2
Basal forebrainipsiBAF3
Median eminenceipsiME-0.5
Diagonal band of BrocaipsiDBB0.5
Nucleus of the horizontal limb of the diagonal bandipsiHDB2
Nucleus of the vertical limb of the diagonal bandipsiVDB3
Basal nucleus MeynertipsiB0.5
Substantia innominataipsiSI0.5
Medial preoptic areaipsiMPA-0.5
Magnocellular preoptic nucleusipsiMCPO0.5
Ventrolateral preoptic nucleusipsiVLPO2
Ventromedial preoptic nucleusipsiVMPO-0.5
Anterior hypothalamic areaipsiAHA3
Posterior hypothalamic areaipsiPHA3
Arcuate nucleusipsiArc-0.5
Paraventricular hypothalamic nucleusipsiPa3
Mid paraventricular hypothalamic nucleusipsiMiPa-0.5
Paraventricular hypothalamic nucleus rostral partipsiPaRo-0.5
Subparaventricular zone of the hypothalamusipsiSPa-0.5
Suprachiasmatic nucleusipsiSCh3
Supraoptic nucleus [Supraoptic region]ipsiSO3
Nucleus properipsiSOnP0
Supraoptic nucleus anterior divisionipsiSOA3
Lateral mammillary nucleusipsiLM3
Mammillary peduncleipsimp-2
Mammillothalamic tractipsimt-2
Medial mammillary nucleus medial partipsiMM1
Anteromedial thalamic nucleus ventral partipsiAMV3
Posterior thalamic nuclear groupipsiPo0.5
Mediodorsal thalamic nucleusipsiMD3
Paraventricular thalamic nucleusipsiPV3
Reuniens thalamic nucleus caudomedial divisionipsiRecm1
Reunienes thalamic nucleus rostromedial divisionipsiRerm1
Reuniens thalamic nucleus lateral partipsiReL3
Ventrolateral thalamic nucleusipsiVL0.5
Ventral posterolateral thalamic nucleusipsiVPL0.5
Ventral posteromedial thalamic nucleusipsiVPM0.5
Zona incerta rostral poleipsiRoPoZI3
Pineal glandipsiPi-0.5
Pituitary glandipsiPIT3
Medial forebrain bundleipsimfb-2
Amygdaloid complexipsiAC3
Central amygdaloid nucleusipsiCe-1
Amygdalopiriform transition areaipsiAPir2
Globus pallidusipsiGP2
Peripallidal regionipsiPePa1
Subpallidal regionipsiSuPa2
StriatumipsiSTR2
Caudate putamenipsiCPu3
Medial striatumipsiCPum3
Lateral striatumipsiCPul2
Cerebral cortexipsiCEC-0.5
HippocampusipsiHIPP2
Dorsal hippocampusipsiHIPPd3
Dentate gyrusipsiDG-0.5
Field CA1 of hippocampusipsiCA1-0.5
Field CA2 of hippocampusipsiCA2-0.5
Field CA3 of hippocampusipsiCA3-0.5
Ventral hippocampusipsiHIPPv1.5
Fornixipsif-2
Entorhinal cortexipsiEnt-0.5
Lateral entorhinal cortexipsiLEnt3
Lateral entorhinal cortex ventral partipsiVLEA2
Lateral entorhinal cortex ventromedial partipsiVMEAL2
Medial entorhinal cortexipsiMEnt3
Piriform cortexipsiPir3
Cingulate cortexipsiCg-0.5
Cingulate cortex area 1 caudal partipsiCg1c1
Cingulate cortex area 2 caudal partipsiCg2c1
Prelimbic cortexipsiPrL2
Infralimbic cortexipsiIL1.5
Infralimbic cortex rostral partipsiILR1
Frontal association cortexipsiFrA3
Frontal cortex area 2ipsiFr23
Frontal cortex area 2 lateral partipsiFr2L2
Insular cortexipsiICX-0.5
Granular insular cortexipsiGI2
Perirhinal cortexipsiA353
Ectorhinal cortexipsiA362
Prefrontal cortexipsiPFC3
Motoric regionsipsiM1
Medial prefrontal cortexipsimPFC0
Medial agranular prefrontal cortexipsiAGm1
Primary somatosensory cortexipsiS13
Secondary somatosensory cortexipsiS23
Primary visual cortexipsiV1-0.5
Secondary visual cortexipsiV2-0.5
Olfactory bulb A16ipsiMOB2
Anterior olfactory nucleusipsiAON-0.5
Olfactory peduncleipsiOLP-0.5
Olfactory tubercleipsiTuO3
Septal regionipsiSER2
3d ventricleipsi3V2
Near the wall of the third ventricleipsi3Vnw-2
Spinal cordipsiMES-0.5
Cervical segment 1ipsiCS12
Cervical segment 2ipsiCS22
Cervical segment 3ipsiCS32
Cervical segment 4ipsiCS42
Cervical segment 5ipsiCS52
Cervical segment 7ipsiCS71
Intermediolateral cell column T5ipsiIMLT50
Intermediolateral cell column T6ipsiIMLT60
Intermediolateral cell column T7ipsiIMLT70
Thoracal segment 8ipsiT8-0.5
Intermediolateral cell column T8ipsiIMLT80
Intermediolateral cell column T9ipsiIMLT90
Intermediolateral cell column T10ipsiIMLT100
Lumbar segment 1ipsiL1-0.5
Lumbar segment 6ipsiL6-0.5
Sacral segment 4ipsiSa4-0.5
Central gray dorsolateral partcontraCGDL1
Nuclei of the lateral lemniscuscontraNLL1
Inferior colliculuscontraICOL-0.5
Superior colliculuscontraSC0.5
Superior colliculus deep layerscontraSCd2
Central tegmental field dorsal partcontraTGACd0
Substantia nigra lateral partcontraSNL-0.5
Substantia nigra medial partcontraSNM-0.5
Laterodorsal tegmental nucleuscontraLDTg1
Ventral tegmental nucleuscontraVTg0.5
Dorsal tegmental nucleuscontraDTg0.5
Pedunculopontine tegmental nucleuscontraPPTg1
Cerebellar lobule 2contraCERL20.5
Cerebellar lobule 3contraCERL30.5
Interposed cerebellar nucleicontraICN0.5
Locus coeruleuscontraLC0.5
Pontine sublaterodorsal nucleuscontraPsLdn0.5
Pontine reticular nucleuscontraPRN0.5
Lateral parabrachial nucleuscontraLPB0.5
Gigantocellular reticular nucleuscontraGi0.5
Lateral vestibular nucleuscontraLVe0.5
Nucleus of the solitary tractcontraSol0.5
Raphe magnus nucleuscontraRMg0.5
Median eminencecontraME-0.5
Medial preoptic areacontraMPA-0.5
Ventrolateral preoptic nucleuscontraVLPO0.5
Ventromedial preoptic nucleuscontraVMPO-0.5
Anterior hypothalamic areacontraAHA2
Posterior hypothalamic areacontraPHA3
Paraventricular hypothalamic nucleuscontraPa2
Supraoptic nucleus [Supraoptic region]contraSO2
Lateral mammillary nucleuscontraLM3
Medial mammillary nucleus medial partcontraMM-0.5
Anteromedial thalamic nucleus ventral partcontraAMV2
Reuniens thalamic nucleus lateral partcontraReL2
Zona incerta rostral polecontraRoPoZI2
Pituitary glandcontraPIT3
Amygdaloid complexcontraAC2
StriatumcontraSTR1
Caudate putamencontraCPu2
HippocampuscontraHIPP1
Dentate gyruscontraDG-0.5
Field CA1 of hippocampuscontraCA1-0.5
Field CA2 of hippocampuscontraCA2-0.5
Field CA3 of hippocampuscontraCA3-0.5
Entorhinal cortexcontraEnt-0.5
Lateral entorhinal cortexcontraLEnt-0.5
Medial entorhinal cortexcontraMEnt-0.5
Piriform cortexcontraPir-0.5
Prelimbic cortexcontraPrL-0.5
Frontal association cortexcontraFrA2
Granular insular cortexcontraGI1
Prefrontal cortexcontraPFC2
Olfactory bulb A16contraMOB1
Olfactory pedunclecontraOLP-0.5
Olfactory tuberclecontraTuO-0.5
Cervical segment 1contraCS11
Cervical segment 2contraCS21
Cervical segment 3contraCS31
Cervical segment 4contraCS41
Cervical segment 5contraCS51
Cervical segment 7contraCS70.5
Pterygopalatine ganglioncontraAutoPpG-0.5
Liver sideipsiOrgsLivs1
Vitreous humor of eyeipsiOrgVHEye3
ThymusipsiThym-0.5

Input from

NameSideAbbr.WeightDetails
Paralemniscal nucleusipsiPL3
Periaqueductal grayipsiPAG1
Mesopontine tegmental area caudal partipsiTGAmc1.5
Mesopontine tegmental area dorsal partipsiTGAmd1
Mesopontine tegmental area mid-levelipsiTGAmm1
Mesopontine tegmental area rostral partipsiTGAmr1
Mesopontine tegmental area ventral partipsiTGAmv0
Pedunculopontine tegmental nucleus caudal partipsiPPTgC1
Pedunculopontine tegmental nucleus dorsal partipsiPPTgd1
Pedunculopontine tegmental nucleus mid levelipsiPPTgmL1
Pedunculopontine tegmental nucleus rostral partipsiPPTgR1
Pedunculopontine tegmental nucleus ventral partipsiPPTgv0
Locus coeruleusipsiLC1
Subcoeruleus nucleus dorsal partipsiSubCD-0.5
Principal sensory trigeminal nucleusipsiPr52
Spinal trigeminal nucleus interpolar partipsiSp5I2
Spinal trigeminal nucleus oral partipsiSp5O2
Trigeminal subnucleus caudalisipsi5SSC2
Caudal nucleus of the solitary tract medial partipsiSolcame1
Raphe nucleiipsiRAN1
Dorsal raphe nucleusipsiDR2
Median raphe nucleusipsiMnR2
Superior central raphe nucleusipsiCS2
Basal forebrainipsiBAF-0.5
Diagonal band of BrocaipsiDBB3
Nucleus of the horizontal limb of the diagonal bandipsiHDB1
Nucleus of the vertical limb of the diagonal bandipsiVDB4
Substantia innominataipsiSI-0.5
Lateral preoptic areaipsiLPO2.5
Medial preoptic areaipsiMPA3
Ventrolateral preoptic nucleusipsiVLPO3
Dorsolateral preoptic regionipsiPREOdL3
Lateral hypothalamic areaipsiLH4
Lateral hypothalamic area perifornical partipsiPFx4
Lateral hypothalamic area posterior partipsiLHAp-0.5
Tuberal division of the lateral hypothalamic areaipsiLHTC-0.5
Anterior hypothalamic areaipsiAHA3
Dorsal hypothalamic areaipsiDA-0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM4
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM4
Posterior hypothalamic areaipsiPHA4
Lateral part of ventral subparaventricular zoneipsiSuPZvL2
Subparaventricular zone ventromedial partipsiSuPZvm2
Subparaventricular zone dorsomedial partipsiSuPZdm1
Subparaventricular zone dorsolateral partipsiSuPZdL3
Ventromedial hypothalamic nucleusipsiVMH2
Arcuate nucleus lateral partipsiArcL-0.5
Arcuate nucleus medial partipsiArcM-0.5
Supraoptic nucleus [Supraoptic region]ipsiSO3
Perifornical nucleusipsiPeF-0.5
Subparafascicular thalamic nucleusipsiSPF2
Subparafascicular thalamic nucleus rostral partipsiSPFr2
Zona incertaipsiZI-0.5
Bed nucleus of the stria terminalis anterior medial partipsiBSTAM1
Posterior amygdaloid nucleusipsiCOAp0.5
Amygdalohippocampal areaipsiAHi2
Peripallidal regionipsiPePa0
Subpallidal regionipsiSuPa1
Hippocampal septalipsiHIPPs0.5
Hippocampal temporalipsiHIPPt0.5
SubiculumipsiS2
Intermediate subiculum ventral partipsiSivp1
Subiculum dorsal proximal partipsiSdp1
Subiculum ventral distal partipsiSvd2
Subiculum ventral part caudal subdivisionipsiSvc1
Ventral subiculum rostromedial partipsiSvrm1
PresubiculumipsiPrS-0.5
Entorhinal cortexipsiEnt0.5
Piriform cortexipsiPir0.5
Retrosplenial regionsipsiRS0.5
Anterior cingulate cortexipsiACC0.5
Prelimbic cortexipsiPrL1
Infralimbic cortexipsiIL3
Auditory regionsipsiAU0.5
Agranular insular cortexipsiAI0.5
Agranular insular cortex posterior partipsiAIP0.5
Dorsal peduncular cortexipsiDP3
Motoric regionsipsiM0.5
Lateral prefrontal cortexipsilPFC0.5
Sensory regionsipsiSR0.5
Visual regionsipsiVR0.5
Medial orbital cortexipsiMO3
Area X C1ipsiSCL10C11
Spinal cord layer 3 C1ipsiSCL3C11
Spinal cord layer 4 C1ipsiSCL4C12
Spinal cord layer 1 C1ipsiSCL1C12
Spinal cord layer 2 C1ipsiSCL2C12
Area X C2ipsiSCL10C21
Spinal cord layer 3 C2ipsiSCL3C21
Spinal cord layer 4 C2ipsiSCL4C22
Spinal cord layer 1 C2ipsiSCL1C22
Spinal cord layer 2 C2ipsiSCL2C22
Principal sensory trigeminal nucleuscontraPr52
Spinal trigeminal nucleus interpolar partcontraSp5I2
Spinal trigeminal nucleus oral partcontraSp5O2
Trigeminal subnucleus caudaliscontra5SSC2
Incerto hypothalamic areacontraicHYPO1
Perifornical nucleuscontraPeF-0.5
Hippocampal septalcontraHIPPs0.5
Hippocampal temporalcontraHIPPt0.5
Entorhinal cortexcontraEnt0.5
Piriform cortexcontraPir0.5
Retrosplenial regionscontraRS0.5
Anterior cingulate cortexcontraACC0.5
Prelimbic cortexcontraPrL0.5
Infralimbic cortexcontraIL0.5
Auditory regionscontraAU0.5
Agranular insular cortexcontraAI0.5
Agranular insular cortex posterior partcontraAIP0.5
Motoric regionscontraM0.5
Lateral prefrontal cortexcontralPFC0.5
Sensory regionscontraSR0.5
Visual regionscontraVR0.5
Area X C1contraSCL10C12
Spinal cord layer 3 C1contraSCL3C12
Spinal cord layer 4 C1contraSCL4C12
Spinal cord layer 1 C1contraSCL1C12
Spinal cord layer 2 C1contraSCL2C12
Area X C2contraSCL10C22
Spinal cord layer 3 C2contraSCL3C22
Spinal cord layer 4 C2contraSCL4C22
Spinal cord layer 1 C2contraSCL1C22
Spinal cord layer 2 C2contraSCL2C22
Stomach wallipsiOrgsStomWS-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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