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Rat connectome



Intermediolateral cell column T5 right


Abbreviation
IMLT5
Color       
Superior regionsThoracal segment 5

SynonymsAbbr.Language
Intermediolateral cell column T5IMLT5Eng

SubregionsSide
Intermediolateral cell column pars funicularis T5right
Intermediolateral cell column pars principalis T5right
Intermediolateral cell column pars spinalis T5right
Sympathetic preganglionic cell column T5right

Output to

NameSideAbbr.WeightDetails
Adrenal preganglionic neurons T5contraT5APG-0.5
Sympathetic preganglionic cell column T5contraSpIMLT5-0.5
Reticulotegmental nucleusipsiRETn-0.5
Pontine reticular nucleus oral partipsiPnO-0.5
Pontine reticular nucleus caudal partipsiPNC-0.5
Parabrachial nucleusipsiPB1
Koelliker Fuse nucleusipsiKF-0.5
Gigantocellular reticular nucleusipsiGi-0.5
Nucleus of the solitary tractipsiSol1
Lateral paragigantocellular nucleusipsiLPGi-0.5
RetinaipsiRET-10
Sympathoadrenal preganglionic neuronsipsiSymAPreGang1
Cervical sympathetic trunkipsiCSegST1
Sympathetic preganglionic cell column T5ipsiSpIMLT5-0.5
Adrenal preganglionic neurons T5ipsiT5APG-0.5
Lumbar segment 1ipsiL1-1
Dorsal root ganglion L3ipsiDRGL3-0.5
Dorsal root ganglion L4ipsiDRGL4-0.5
Dorsal root ganglion L5ipsiDRGL5-0.5
Dorsal root ganglion L6ipsiDRGL6-0.5
Stellate ganglioncontraAutoSteG-0.5
Superior cervical ganglioncontraAutoSCeG-0.5
Coeliaco-mesenteric ganglion complexcontraAutoParGcmgc3
Median nervecontramen-0.5
Ulnar nervecontrauln-0.5
Paravertebral sympathetic gangliaipsiAutoPaGTSym-0.5
Stellate ganglionipsiAutoSteG3
Superior cervical ganglionipsiAutoSCeG3
Coeliaco-mesenteric ganglion complexipsiAutoParGcmgc3
CoripsiOrgsCor2
Ventral stomach wallcontraOrgsStomVWS-0.5
Ventral stomach wallipsiOrgsStomVWS-0.5
Distal coloncontraOrgsColonDi-0.5
Distal colonipsiOrgsColonDi-0.5
Liver lobeipsiOrgsLivL4
Adrenal glandcontraADRE3
Adrenal medullacontraOrgsAM0
Sublingual glandcontraOrgSubLGL-0.5
Submandibular glandcontraOrgsSubg-0.5
OvarycontraOrgOvar-0.5
KidneycontraOrgsKid2
ThymuscontraThym1
SpleencontraOrgSPL3
Intercapsular brown adipose tissueipsiOrgBATi-10
Adrenal glandipsiADRE3
Adrenal medullaipsiOrgsAM3
Adrenal medullary ganglion neuronsipsiOrgsAMgn-0.5
Sublingual glandipsiOrgSubLGL-0.5
Submandibular glandipsiOrgsSubg-0.5
Vitreous humor of eyeipsiOrgVHEye3
Interscapular brown fat tissueipsiOrgisBFT3
Triceps brachii muscleipsiMuscTriBra-10
Musculus masseteripsiMuscMass-0.5
Bulbospongiosus muscleipsiMuscbsp-0.5
Femoral bone marrowipsiOrgSkFemM-0.5
PeritoneumipsiOrgPeri-0.5
Retroperitoneal fatipsiOrgRetroF-0.5
Mammary glandipsiOrgMamG-0.5
OvaryipsiOrgOvar1
Corpus cavernosumipsiOrgCC2
TestisipsiOrgTest-0.5
KidneyipsiOrgsKid2
ThymusipsiThym1
SpleenipsiOrgSPL3
Pancreas sidecontraOrgsPancs-10
Pancreas sideipsiOrgsPancs-10

Input from

NameSideAbbr.WeightDetails
A5 noradrenaline cellscontraA53
Locus coeruleuscontraLC1
Rostroventral reticular formationcontraRFrv3
Rostroventrolateral reticular nucleuscontraRVL3
Pontine reticular nucleus caudal partcontraPNC0.5
Koelliker Fuse nucleuscontraKF0.5
Gigantocellular reticular nucleuscontraGi0.5
Gigantocellular reticular nucleus alpha partcontraGiA0.5
Medial medullary reticular nucleuscontraMMdD1
Medial subnucleus reticularis ventraliscontraMSRV1
Medulla oblongatacontraMeOb-0.5
C1 adrenaline cellscontraC12
C1 adrenaline cells caudal partcontraC1c2
Accessory trigeminal nucleuscontraAcs5-0.5
Nucleus of the solitary tractcontraSol-0.5
Nucleus of the solitary tract caudal partcontraSolca2
Medial part of the commissural subnucleuscontraMSolC2
Caudal raphe nucleicontraRANc1
Raphe magnus nucleuscontraRMg1
Raphe obscurus nucleuscontraROb1
Raphe pallidus nucleuscontraRPa1
Ventral lateral medulla oblongatacontraMVL-0.5
Rostral ventrolateral medullacontraRVLM3
Subretrofacial rostral ventrolateral medullacontraSRRVLM1.5
A1 noradrenergic cellscontraA1-0.5
Nucleus interfascicularis hypoglossicontraNIFH-0.5
Inferior olive cap of Kooy of the medial nucleuscontraIOK-0.5
Paragigantocellular reticular nucleuscontraPGi1
Retrotrapezoid nucleuscontraRTN1
Medulla oblongata rostroventralcontraMeObRV-0.5
Lateral zonecontraLHA2.5
Lateral hypothalamic areacontraLH0.5
Arcuate nucleuscontraArc0.5
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]contraPaMP-0.5
Paraventricular hypothalamic nucleus lateral parvocellular partcontraLPPa0.5
Paraventricular hypothalamic nucleuscontraPa-0.5
Paraventricular hypothalamic nucleus dorsal parvocellular divisioncontraPavPoD0.5
Paraventricular hypothalamic nucleus parvocellular division ventral partcontraPavPoV0.5
Paraventricular nucleus dorsal partcontraPaDo1
Paraventricular nucleus posterior partcontraPaPos1
Paraventricular nucleus ventral partcontraPaVe1
A11 dopamine cellscontraA110.5
Perifornical nucleuscontraPeF2.5
Retrochiasmatic areacontraRCh0.5
Parafascicular thalamic nucleus prerubral partcontraPFPR0.5
Cingulate cortex area 3 vasoregulatory regioncontraCg3vr1
Cingulate cortex area 3 vasoregulatory region layer 3contraCg3vrL31
Cingulate cortex area 3 vasoregulatory region layer 4contraCg3vrL41
Cingulate cortex area 3 vasoregulatory region layer 5contraCg3vrL51
Cingulate cortex area 3 vasoregulatory region layer 6contraCg3vrL61
Infralimbic cortexcontraIL1
Insular cortexcontraICX0
Sensory regionscontraSR0
Central grayipsiCG1
PonsipsiP0
A5 noradrenaline cellsipsiA53
A5 noradrenaline cells caudal partipsiA5C2
A5 noradrenaline cells rostral partipsiA5R2
A7 noradrenaline cellsipsiA71
Locus coeruleusipsiLC3
Reticulotegmental nucleusipsiRETn-0.5
Paramedian reticular nucleusipsiPMn0
Rostroventral reticular formationipsiRFrv3
Rostroventrolateral reticular nucleusipsiRVL3
Ventrolateral reticular formationipsiVLRF-0.5
Pontine reticular nucleusipsiPRN-0.5
Pontine reticular nucleus oral partipsiPnO-0.5
Pontine reticular nucleus caudal partipsiPNC1
Parabrachial nucleusipsiPB-0.5
Koelliker Fuse nucleusipsiKF0.5
Parabrachial nucleus dorsal partipsiPBD-0.5
Gigantocellular reticular nucleusipsiGi2
Gigantocellular reticular nucleus alpha partipsiGiA1
Gigantocellular reticular nucleus ventral partipsiGiV0.5
Medial medullary reticular nucleusipsiMMdD1
Medial subnucleus reticularis ventralisipsiMSRV1
Subcoeruleus nucleusipsiSubC1
Medulla oblongataipsiMeOb-0.5
C1 adrenaline cellsipsiC13
C1 adrenaline cells caudal partipsiC1c2
Ambiguus nucleusipsiAmb1
Area postremaipsiAP0
Accessory trigeminal nucleusipsiAcs5-0.5
Nucleus of the solitary tractipsiSol2
Nucleus of the solitary tract caudal partipsiSolca3
Medial part of the commissural subnucleusipsiMSolC3
Nucleus of the solitary tract intermediate partipsiSolIM2
Nucleus of the solitary tract ventral partipsiSolV2
Nucleus of the solitary tract ventrolateral partipsiSolVL2
Dorsal motor nucleus of vagusipsi101
Raphe nucleiipsiRAN3
Caudal raphe nucleiipsiRANc3
Raphe magnus nucleusipsiRMg3
Raphe magnus nucleus caudal partipsiRMgc-0.5
Raphe obscurus nucleusipsiROb3
Raphe obscurus nucleus rostral partipsiRObr-0.5
Raphe obscurus nucleus ventral partipsiRObV2
Raphe pallidus nucleusipsiRPa3
Ventral lateral medulla oblongataipsiMVL-0.5
Rostral ventrolateral medullaipsiRVLM3
Subretrofacial rostral ventrolateral medullaipsiSRRVLM2
A1 noradrenergic cellsipsiA13
A2 noradrenergic cellsipsiA23
Nucleus interfascicularis hypoglossiipsiNIFH-0.5
Inferior olive cap of Kooy of the medial nucleusipsiIOK-0.5
Superior oliveipsiSuOLi-0.5
Paragigantocellular reticular nucleusipsiPGi1
Lateral paragigantocellular nucleusipsiLPGi3
Retrotrapezoid nucleusipsiRTN3
Rostral ventral medulla oblongataipsiRVMeO-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm4
Medulla oblongata rostroventralipsiMeObRV-0.5
Tuberomammillary nucleusipsiTuM0
Vascular organ of the lamina terminalisipsiVOLT0
Dorsomedial hypothalamic nucleusipsiDMHy0
Lateral zoneipsiLHA3
Lateral hypothalamic areaipsiLH1
Lateral hypothalamic area posterior partipsiLHAp0.5
Tuberal division of the lateral hypothalamic areaipsiLHTC0.5
Anterior hypothalamic areaipsiAHA0
Dorsomedial hypothalamic nucleus medial partipsiDMmp-0.5
Ventromedial hypothalamic nucleusipsiVMH0
Arcuate nucleusipsiArc0.5
Paraventricular hypothalamic nucleus dorsal cap [Periventricular zone anterior region]ipsiPaDC3
Paraventricular hypothalamic nucleus dorsal partipsiPaD-0.5
Paraventricular hypothalamic nucleus posterior part [Periventricular zone anterior region]ipsiPaPo-0.5
Paraventricular hypothalamic nucleus ventral part [Periventricular zone anterior region]ipsiPaV3
Ventrolateral paraventricular hypothalamic nucleusipsiPaVM-0.5
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP3
Paraventricular hypothalamic nucleus parvicellular division dorsal partipsiPaPcD-0.5
Paraventricular hypothalamic nucleus lateral parvocellular partipsiLPPa1
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP0.5
Paraventricular nucleus of the hypothalamus magnocellular division anterior magnocellular partipsiPaAMa0.5
Paraventricular hypothalamic nucleusipsiPa2.5
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag0
Paraventricular hypothalamic nucleus magnocellular division posterior partipsiPaMagP1.5
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo1
Paraventricular hypothalamic nucleus dorsal parvocellular divisionipsiPavPoD2.5
Paraventricular nucleus lateral parvocellular partipsiPaLp0.5
Paraventricular hypothalamic nucleus parvocellular division ventral partipsiPavPoV0.5
Paraventricular hypothalamic nucleus parvocellular division lateroposterior subnucleiipsiPavPoLP3
Paraventricular hypothalamic nucleus rostral partipsiPaRo1
Paraventricular nucleus dorsal partipsiPaDo3
Paraventricular nucleus posterior partipsiPaPos3
Paraventricular nucleus ventral partipsiPaVe3
Paraventricular hypothalamic nucleus caudal levelipsiPaCa3
Middle part of the paraventricular hypothalamic nucleusipsiPaMi3
Suprachiasmatic nucleusipsiSCh0
Supraoptic nucleus [Supraoptic region]ipsiSO0
A11 dopamine cellsipsiA113
Perifornical nucleusipsiPeF3
Retrochiasmatic areaipsiRCh1
Basal retrochiasmatic areaipsiBRCh1
Parafascicular thalamic nucleus prerubral partipsiPFPR1
Subfornical organipsiSFO0
Zona incertaipsiZI1
Neurons in the lateral funiculus cervical level C3ipsiNLFC3-0.5
Bed nucleus of the stria terminalisipsiBST0
Accumbens nucleusipsiAc0
Cingulate cortex area 3 vasoregulatory regionipsiCg3vr1
Cingulate cortex area 3 vasoregulatory region layer 3ipsiCg3vrL31
Cingulate cortex area 3 vasoregulatory region layer 4ipsiCg3vrL41
Cingulate cortex area 3 vasoregulatory region layer 5ipsiCg3vrL51
Cingulate cortex area 3 vasoregulatory region layer 6ipsiCg3vrL61
Infralimbic cortexipsiIL1
Insular cortexipsiICX0
Granular insular cortexipsiGI0
Prefrontal cortexipsiPFC2
Sensory regionsipsiSR0
Lateral septal nucleusipsiLS0
Dorsal root ganglion L3ipsiDRGL3-10
Dorsal root ganglion L4ipsiDRGL4-10
Dorsal root ganglion L5ipsiDRGL5-10
Dorsal root ganglion L6ipsiDRGL6-10
Greater splanchnic nerveipsiAutoNGS1
PeritoneumipsiOrgPeri-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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