University of Rostock

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Rat connectome



Intermediolateral cell column T2 left


Abbreviation
IMLT2
Color       
Superior regionsThoracal segment 2

SynonymsAbbr.Language
Intermediolateral cell column T2IMLT2Eng

SubregionsSide
Intermediolateral cell column pars funicularis T2left
Intermediolateral cell column pars principalis T2left
Intermediolateral cell column pars spinalis T2left
Sympathetic preganglionic cell column T2left
Intermediolateral cell column T2 interneuronsleft

Output to

NameSideAbbr.WeightDetails
Reticulotegmental nucleusipsiRETn-0.5
Pontine reticular nucleus oral partipsiPnO-0.5
Pontine reticular nucleus caudal partipsiPNC-0.5
Parabrachial nucleusipsiPB1
Koelliker Fuse nucleusipsiKF-0.5
Gigantocellular reticular nucleusipsiGi-0.5
Nucleus of the solitary tractipsiSol1
Lateral paragigantocellular nucleusipsiLPGi-0.5
Pineal glandipsiPi-0.5
Sympathoadrenal preganglionic neuronsipsiSymAPreGang1
Ventral horn C3ipsiVHC30
Phrenic motoneurons of lamina 9 C3ipsiPh9C30
Ventral horn C4ipsiVHC40
Phrenic motoneurons of lamina 9 C4ipsiPh9C40
Ventral horn C5ipsiVHC50
Phrenic motoneurons of lamina 9 C5ipsiPh9C50
Cervical sympathetic trunkipsiCSegST3
Sympathetic preganglionic cell column T2ipsiSpIMLT2-0.5
Lumbar segment 1ipsiL1-1
Pineal glandcontraPi-0.5
Sympathetic preganglionic cell column T2contraSpIMLT2-0.5
Paravertebral sympathetic gangliaipsiAutoPaGTSym-0.5
Stellate ganglionipsiAutoSteG3
Superior cervical ganglionipsiAutoSCeG3
Superior cervical ganglioncontraAutoSCeG-0.5
CoripsiOrgsCor2
Ventral stomach wallipsiOrgsStomVWS-0.5
Ventral stomach wallcontraOrgsStomVWS-0.5
Distal colonipsiOrgsColonDi-0.5
Distal coloncontraOrgsColonDi-0.5
Liver lobeipsiOrgsLivL4
Brown adipose tissueipsiOrgBAT-0.5
ForepawipsiOrgBSDFP-10
Adrenal glandipsiADRE3
Adrenal medullaipsiOrgsAM1
Lacrimal glandipsiOrgLacG-0.5
Sublingual glandipsiOrgSubLGL-0.5
Submandibular glandipsiOrgsSubg-0.5
Parotid glandipsiOrgParG-10
Anterior chamber of the eyeipsiOrgACEye-10
Vitreous humor of eyeipsiOrgVHEye3
Interior chamber of the eyeipsiOrgEyei-10
Interscapular brown fat tissueipsiOrgisBFT3
Musculus masseteripsiMuscMass-0.5
Bulbospongiosus muscleipsiMuscbsp-0.5
PeritoneumipsiOrgPeri-0.5
Mammary glandipsiOrgMamG-0.5
Corpus cavernosumipsiOrgCC2
TestisipsiOrgTest-0.5
KidneyipsiOrgsKid-0.5
ThymusipsiThym3
SpleenipsiOrgSPL3
Adrenal glandcontraADRE3
Sublingual glandcontraOrgSubLGL-0.5
Submandibular glandcontraOrgsSubg-0.5
ThymuscontraThym3
SpleencontraOrgSPL3
Pancreas sideipsiOrgsPancs-10
Pancreas sidecontraOrgsPancs-10

Input from

NameSideAbbr.WeightDetails
Medial longitudinal fasciculusipsimlf-2
Nucleus of DarkschewitschipsiDk-0.5
Periaqueductal grayipsiPAG1
Dorsomedial periaqueductal grayipsiDMPAG-0.5
Lateral periaqueductal grayipsiLPAG-0.5
Ventrolateral periaqueductal grayipsiVLPAG-0.5
Periventricular gray matteripsiPVG-0.5
Red nucleus magnocellular partipsiRMC-0.5
Laterodorsal tegmental nucleusipsiLDTg-0.5
Edinger Westphal nucleusipsiEW-0.5
A5 noradrenaline cellsipsiA53
A5 noradrenaline cells caudal partipsiA5C2
A5 noradrenaline cells rostral partipsiA5R2
A7 noradrenaline cellsipsiA71
Barringtons nucleusipsiBar-0.5
Locus coeruleusipsiLC4
Reticulotegmental nucleusipsiRETn-0.5
Prepositus nucleusipsiPr-0.5
Paramedian reticular nucleusipsiPMn0
Rostroventral reticular formationipsiRFrv3
Rostroventrolateral reticular nucleusipsiRVL3
Ventrolateral reticular formationipsiVLRF-0.5
Pontine reticular nucleusipsiPRN-0.5
Pontine reticular nucleus oral partipsiPnO-0.5
Pontine reticular nucleus caudal partipsiPNC1
Parabrachial nucleusipsiPB-0.5
Koelliker Fuse nucleusipsiKF1
Parabrachial nucleus dorsal partipsiPBD-0.5
Gigantocellular reticular nucleusipsiGi3
Gigantocellular reticular nucleus alpha partipsiGiA1
Gigantocellular reticular nucleus ventral partipsiGiV0.5
Caudal medullary reticular formationipsiCMdD-0.5
Medial medullary reticular nucleusipsiMMdD3
Medial subnucleus reticularis ventralisipsiMSRV1
Medullary reticular nucleus ventral partipsiMdV-0.5
Parvicellular reticular nucleusipsiPCRt1
Subcoeruleus nucleusipsiSubC1
Medulla oblongataipsiMeOb-0.5
C1 adrenaline cellsipsiC1-0.5
Ambiguus nucleusipsiAmb0.5
Accessory trigeminal nucleusipsiAcs5-0.5
Vestibular nucleiipsiVnc-0.5
Nucleus of the solitary tractipsiSol-0.5
Nucleus of the solitary tract caudal partipsiSolca3
Nucleus of the solitary tract commissural partipsiSolC3
Medial part of the commissural subnucleusipsiMSolC3
Nucleus of the solitary tract intermediate partipsiSolIM2
Nucleus of the solitary tract ventral partipsiSolV2
Nucleus of the solitary tract ventrolateral partipsiSolVL2
Nucleus of the solitary tract caudal visceral sensory partipsiSolcacvs-0.5
Raphe nucleiipsiRAN3
Caudal raphe nucleiipsiRANc3
Dorsal raphe nucleusipsiDR-0.5
Raphe magnus nucleusipsiRMg3
Raphe magnus nucleus caudal partipsiRMgc-0.5
Raphe obscurus nucleusipsiROb3
Raphe obscurus nucleus rostral partipsiRObr-0.5
Raphe obscurus nucleus ventral partipsiRObV2
Raphe pallidus nucleusipsiRPa3
Raphe pallidus nucleus rostral partipsiRParo-10
Ventral lateral medulla oblongataipsiMVL2
Caudal ventrolateral medullaipsiCVLM1.5
Intermediate ventral lateral medulla oblongataipsiIMVL2
Rostral ventrolateral medullaipsiRVLM3
Rostral ventrolateral medulla rostral partipsiRVLMr3
Caudal part of the rostral ventrolateral medullaipsiRVLMC0.5
A1 noradrenergic cellsipsiA1-0.5
Nucleus interfascicularis hypoglossiipsiNIFH-0.5
Inferior olive cap of Kooy of the medial nucleusipsiIOK-0.5
Superior oliveipsiSuOLi-0.5
Paragigantocellular reticular nucleusipsiPGi1
Lateral paragigantocellular nucleusipsiLPGi3
Retrofacial paragigantocellular reticular nucleusipsiRPGi-0.5
Retrotrapezoid nucleusipsiRTN3
Rostral ventral respiratory groupipsiRVRG-0.5
Rostral ventral medulla oblongataipsiRVMeO-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm4
Medulla oblongata rostroventralipsiMeObRV-0.5
Dorsomedial hypothalamic nucleusipsiDMHy1
Lateral zoneipsiLHA4
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area caudal partipsiLHc4
Lateral hypothalamic area posterior partipsiLHAp0.5
Lateral hypothalamic area rostral partipsiLHro1
Tuberal division of the lateral hypothalamic areaipsiLHTC0.5
Dorsolateral hypothalamic areaipsiLHADL3
Anterior hypothalamic areaipsiAHA0
Dorsal hypothalamic areaipsiDA-0.5
Dorsomedial hypothalamic areaipsiDMHyA2
Posterior hypothalamic areaipsiPHA-0.5
Posterior hypothalamic nucleusipsiPH-0.5
Subparaventricular zoneipsiSuPZ1
Periventricular zoneipsiPVZ1
Arcuate nucleusipsiArc1
Nucleus paraventricularis [Periventricular zone anterior region]ipsiPaPAR-0.5
Paraventricular nucleus of the hypothalamus magnocellular division anterior magnocellular partipsiPaAMa0.5
Nucleus paraventricularis parvocellular partipsiPaPaP-0.5
Paraventricular hypothalamic nucleus parvicellular part [Periventricular zone anterior region]ipsiPaPc4
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP3
Paraventricular hypothalamic nucleus parvicellular division dorsal partipsiPaPcD-0.5
Paraventricular hypothalamic nucleus parvicellular division periventricular partipsiPaPP3
Paraventricular hypothalamic nucleus lateral parvocellular partipsiLPPa2
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP0.5
Paraventricular hypothalamic nucleus dorsal partipsiPaD-0.5
Paraventricular hypothalamic nucleus posterior part [Periventricular zone anterior region]ipsiPaPo-0.5
Paraventricular hypothalamic nucleus ventral part [Periventricular zone anterior region]ipsiPaV-0.5
Ventrolateral paraventricular hypothalamic nucleusipsiPaVM-0.5
Paraventricular hypothalamic nucleusipsiPa3
Paraventricular hypothalamic nucleus caudal levelipsiPaCa-0.5
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag0
Paraventricular hypothalamic nucleus magnocellular division posterior partipsiPaMagP1.5
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo1
Dorsomedial parvocellular paraventricular hypothalamic nucleusipsiPavPoDm-0.5
Paraventricular hypothalamic nucleus dorsal parvocellular divisionipsiPavPoD3
Paraventricular hypothalamic nucleus parvocellular division lateroposterior subnucleiipsiPavPoLP3
Paraventricular hypothalamic nucleus parvocellular division posterior partipsiPavPoP-0.5
Paraventricular hypothalamic nucleus parvocellular division ventral partipsiPavPoV0.5
Paraventricular nucleus lateral parvocellular partipsiPaLp0.5
Ventrolateral parvocellular subdivision of the paraventricular hypothalamic nucleusipsiPavPoVL-0.5
Paraventricular hypothalamic nucleus rostral partipsiPaRo-0.5
Paraventricular nucleus dorsal partipsiPaDo3
Paraventricular nucleus posterior partipsiPaPos3
Paraventricular nucleus ventral partipsiPaVe3
Supraoptic nucleus [Supraoptic region]ipsiSO1
A11 dopamine cellsipsiA113
Perifornical nucleusipsiPeF4
Retrochiasmatic areaipsiRCh2
Basal retrochiasmatic areaipsiBRCh1
Parafascicular thalamic nucleus prerubral partipsiPFPR1
Reuniens thalamic nucleusipsiRe1
Zona incertaipsiZI1
Tuber cinereum areaipsiTC-0.5
Neurons in the lateral funiculus cervical level C3ipsiNLFC3-0.5
Cingulate cortex area 3 vasoregulatory regionipsiCg3vr1
Cingulate cortex area 3 vasoregulatory region layer 3ipsiCg3vrL31
Cingulate cortex area 3 vasoregulatory region layer 4ipsiCg3vrL41
Cingulate cortex area 3 vasoregulatory region layer 5ipsiCg3vrL51
Cingulate cortex area 3 vasoregulatory region layer 6ipsiCg3vrL61
Prelimbic cortexipsiPrL-0.5
Infralimbic cortexipsiIL1
Insular cortexipsiICX0.5
Lateral agranular prefrontal cortexipsiAGl0.5
Medial agranular prefrontal cortexipsiAGm0.5
Sensory regionsipsiSR0
Primary somatosensory cortexipsiS10.5
Visual regionsipsiVR0.5
Lateral spinal nucleusipsiMESLn-0.5
Reticulated division of the spinal cord layer 5 T2ipsiSCL5T2r-0.5
Caudal spinal cord layer 6 T2ipsiSCL6T2c-0.5
Ventral lateralmost region of the spinal cord layer 4 T2ipsiSCL4T2vL0.5
Lateral half of the spinal cord layer 7 T2ipsiSCL7T2Lh-0.5
A5 noradrenaline cellscontraA53
Locus coeruleuscontraLC1
Rostroventral reticular formationcontraRFrv3
Rostroventrolateral reticular nucleuscontraRVL3
Pontine reticular nucleus caudal partcontraPNC0.5
Koelliker Fuse nucleuscontraKF1
Gigantocellular reticular nucleuscontraGi0.5
Gigantocellular reticular nucleus alpha partcontraGiA0.5
Medial medullary reticular nucleuscontraMMdD1
Medial subnucleus reticularis ventraliscontraMSRV1
Parvicellular reticular nucleuscontraPCRt0.5
Medulla oblongatacontraMeOb-0.5
C1 adrenaline cellscontraC1-0.5
Accessory trigeminal nucleuscontraAcs5-0.5
Nucleus of the solitary tractcontraSol-0.5
Nucleus of the solitary tract caudal partcontraSolca2
Medial part of the commissural subnucleuscontraMSolC2
Caudal raphe nucleicontraRANc1
Raphe magnus nucleuscontraRMg1
Raphe obscurus nucleuscontraROb1
Raphe pallidus nucleuscontraRPa1
Ventral lateral medulla oblongatacontraMVL1
Caudal ventrolateral medullacontraCVLM1
Intermediate ventral lateral medulla oblongatacontraIMVL1.5
Rostral ventrolateral medullacontraRVLM3
A1 noradrenergic cellscontraA1-0.5
Nucleus interfascicularis hypoglossicontraNIFH-0.5
Inferior olive cap of Kooy of the medial nucleuscontraIOK-0.5
Paragigantocellular reticular nucleuscontraPGi1
Retrotrapezoid nucleuscontraRTN1
Medulla oblongata rostroventralcontraMeObRV-0.5
Lateral zonecontraLHA3
Lateral hypothalamic areacontraLH0.5
Arcuate nucleuscontraArc0.5
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]contraPaMP-0.5
Paraventricular hypothalamic nucleus parvicellular division periventricular partcontraPaPP-0.5
Paraventricular hypothalamic nucleus lateral parvocellular partcontraLPPa1
Paraventricular hypothalamic nucleuscontraPa2
Paraventricular hypothalamic nucleus dorsal parvocellular divisioncontraPavPoD0.5
Paraventricular hypothalamic nucleus parvocellular division ventral partcontraPavPoV0.5
Paraventricular nucleus dorsal partcontraPaDo1
Paraventricular nucleus posterior partcontraPaPos1
Paraventricular nucleus ventral partcontraPaVe1
A11 dopamine cellscontraA110.5
Perifornical nucleuscontraPeF3
Retrochiasmatic areacontraRCh0.5
Parafascicular thalamic nucleus prerubral partcontraPFPR0.5
Cingulate cortex area 3 vasoregulatory regioncontraCg3vr1
Cingulate cortex area 3 vasoregulatory region layer 3contraCg3vrL31
Cingulate cortex area 3 vasoregulatory region layer 4contraCg3vrL41
Cingulate cortex area 3 vasoregulatory region layer 5contraCg3vrL51
Cingulate cortex area 3 vasoregulatory region layer 6contraCg3vrL61
Infralimbic cortexcontraIL1
Insular cortexcontraICX3
Lateral agranular prefrontal cortexcontraAGl3
Medial agranular prefrontal cortexcontraAGm3
Sensory regionscontraSR0
Primary somatosensory cortexcontraS13
Visual regionscontraVR1
Lateral spinal nucleuscontraMESLn-0.5
PeritoneumipsiOrgPeri-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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