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Rat connectome



Intermediolateral cell column T4 right


Abbreviation
IMLT4
Color       
Superior regionsThoracal segment 4

SynonymsAbbr.Language
Intermediolateral cell column T4IMLT4Eng

SubregionsSide
Intermediolateral cell column pars funicularis T4right
Intermediolateral cell column pars principalis T4right
Intermediolateral cell column pars spinalis T4right
Sympathetic preganglionic cell column T4right

Output to

NameSideAbbr.WeightDetails
Pineal glandcontraPi-0.5
Sympathetic preganglionic cell column T4contraSpIMLT4-0.5
Reticulotegmental nucleusipsiRETn-0.5
Pontine reticular nucleus oral partipsiPnO-0.5
Pontine reticular nucleus caudal partipsiPNC-0.5
Parabrachial nucleusipsiPB1
Koelliker Fuse nucleusipsiKF-0.5
Gigantocellular reticular nucleusipsiGi-0.5
Nucleus of the solitary tractipsiSol1
Lateral paragigantocellular nucleusipsiLPGi-0.5
Pineal glandipsiPi-0.5
RetinaipsiRET-10
Sympathoadrenal preganglionic neuronsipsiSymAPreGang1
Ventral horn C3ipsiVHC30
Phrenic motoneurons of lamina 9 C3ipsiPh9C30
Ventral horn C4ipsiVHC40
Phrenic motoneurons of lamina 9 C4ipsiPh9C40
Ventral horn C5ipsiVHC50
Phrenic motoneurons of lamina 9 C5ipsiPh9C50
Cervical sympathetic trunkipsiCSegST1
Sympathetic preganglionic cell column T4ipsiSpIMLT4-0.5
Lumbar segment 1ipsiL1-1
Dorsal root ganglion L3ipsiDRGL3-0.5
Dorsal root ganglion L4ipsiDRGL4-0.5
Dorsal root ganglion L5ipsiDRGL5-0.5
Dorsal root ganglion L6ipsiDRGL6-0.5
Superior cervical ganglioncontraAutoSCeG-0.5
Median nervecontramen-0.5
Ulnar nervecontrauln-0.5
Paravertebral sympathetic gangliaipsiAutoPaGTSym-0.5
Stellate ganglionipsiAutoSteG3
Superior cervical ganglionipsiAutoSCeG3
CoripsiOrgsCor2
Ventral stomach wallcontraOrgsStomVWS-0.5
Ventral stomach wallipsiOrgsStomVWS-0.5
Distal coloncontraOrgsColonDi-0.5
Distal colonipsiOrgsColonDi-0.5
Liver lobeipsiOrgsLivL4
Adrenal glandcontraADRE3
Sublingual glandcontraOrgSubLGL-0.5
Submandibular glandcontraOrgsSubg-0.5
Medial gastrocnemius musclecontraMuscMGC1
OvarycontraOrgOvar-0.5
KidneycontraOrgsKid2
ThymuscontraThym2
SpleencontraOrgSPL3
Brown adipose tissueipsiOrgBAT-0.5
Intercapsular brown adipose tissueipsiOrgBATi-10
Adrenal glandipsiADRE3
Adrenal medullaipsiOrgsAM3
Adrenal medullary ganglion neuronsipsiOrgsAMgn-0.5
Sublingual glandipsiOrgSubLGL-0.5
Submandibular glandipsiOrgsSubg-0.5
Parotid glandipsiOrgParG-10
Vitreous humor of eyeipsiOrgVHEye3
Interscapular brown fat tissueipsiOrgisBFT3
Medial gastrocnemius muscleipsiMuscMGC1
Musculus masseteripsiMuscMass-0.5
Bulbospongiosus muscleipsiMuscbsp-0.5
Femoral bone marrowipsiOrgSkFemM-0.5
PeritoneumipsiOrgPeri-0.5
Mammary glandipsiOrgMamG-0.5
OvaryipsiOrgOvar1
Corpus cavernosumipsiOrgCC2
TestisipsiOrgTest-0.5
KidneyipsiOrgsKid2
ThymusipsiThym2
SpleenipsiOrgSPL4
Pancreas sidecontraOrgsPancs-10
Pancreas sideipsiOrgsPancs-10

Input from

NameSideAbbr.WeightDetails
A5 noradrenaline cellscontraA53
Locus coeruleuscontraLC1
Rostroventral reticular formationcontraRFrv3
Rostroventrolateral reticular nucleuscontraRVL3
Pontine reticular nucleus caudal partcontraPNC0.5
Koelliker Fuse nucleuscontraKF1
Gigantocellular reticular nucleuscontraGi0.5
Gigantocellular reticular nucleus alpha partcontraGiA0.5
Medial medullary reticular nucleuscontraMMdD1
Medial subnucleus reticularis ventraliscontraMSRV1
Parvicellular reticular nucleuscontraPCRt0.5
Medulla oblongatacontraMeOb-0.5
C1 adrenaline cellscontraC1-0.5
Accessory trigeminal nucleuscontraAcs5-0.5
Nucleus of the solitary tractcontraSol-0.5
Nucleus of the solitary tract caudal partcontraSolca2
Medial part of the commissural subnucleuscontraMSolC2
Caudal raphe nucleicontraRANc1
Raphe magnus nucleuscontraRMg1
Raphe obscurus nucleuscontraROb1
Raphe pallidus nucleuscontraRPa1
Ventral lateral medulla oblongatacontraMVL-0.5
Rostral ventrolateral medullacontraRVLM3
A1 noradrenergic cellscontraA1-0.5
Nucleus interfascicularis hypoglossicontraNIFH-0.5
Inferior olive cap of Kooy of the medial nucleuscontraIOK-0.5
Paragigantocellular reticular nucleuscontraPGi1
Retrotrapezoid nucleuscontraRTN1
Medulla oblongata rostroventralcontraMeObRV-0.5
Lateral zonecontraLHA3
Lateral hypothalamic areacontraLH0.5
Arcuate nucleuscontraArc0.5
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]contraPaMP-0.5
Paraventricular hypothalamic nucleus lateral parvocellular partcontraLPPa1
Paraventricular hypothalamic nucleuscontraPa-0.5
Paraventricular hypothalamic nucleus dorsal parvocellular divisioncontraPavPoD0.5
Paraventricular hypothalamic nucleus parvocellular division ventral partcontraPavPoV0.5
Paraventricular nucleus dorsal partcontraPaDo1
Paraventricular nucleus posterior partcontraPaPos1
Paraventricular nucleus ventral partcontraPaVe1
A11 dopamine cellscontraA110.5
Perifornical nucleuscontraPeF3
Retrochiasmatic areacontraRCh0.5
Parafascicular thalamic nucleus prerubral partcontraPFPR0.5
Cingulate cortex area 3 vasoregulatory regioncontraCg3vr1
Cingulate cortex area 3 vasoregulatory region layer 3contraCg3vrL31
Cingulate cortex area 3 vasoregulatory region layer 4contraCg3vrL41
Cingulate cortex area 3 vasoregulatory region layer 5contraCg3vrL51
Cingulate cortex area 3 vasoregulatory region layer 6contraCg3vrL61
Infralimbic cortexcontraIL1
Insular cortexcontraICX3
Lateral agranular prefrontal cortexcontraAGl3
Medial agranular prefrontal cortexcontraAGm3
Sensory regionscontraSR0
Primary somatosensory cortexcontraS13
Visual regionscontraVR1
Lateral spinal nucleuscontraMESLn-0.5
Medial longitudinal fasciculusipsimlf-2
A5 noradrenaline cellsipsiA53
A5 noradrenaline cells caudal partipsiA5C2
A5 noradrenaline cells rostral partipsiA5R2
A7 noradrenaline cellsipsiA71
Locus coeruleusipsiLC3
Reticulotegmental nucleusipsiRETn-0.5
Prepositus nucleusipsiPr-0.5
Paramedian reticular nucleusipsiPMn0
Rostroventral reticular formationipsiRFrv3
Rostroventrolateral reticular nucleusipsiRVL3
Ventrolateral reticular formationipsiVLRF-0.5
Pontine reticular nucleusipsiPRN-0.5
Pontine reticular nucleus oral partipsiPnO-0.5
Pontine reticular nucleus caudal partipsiPNC1
Parabrachial nucleusipsiPB-0.5
Koelliker Fuse nucleusipsiKF1
Parabrachial nucleus dorsal partipsiPBD-0.5
Gigantocellular reticular nucleusipsiGi2
Gigantocellular reticular nucleus alpha partipsiGiA1
Gigantocellular reticular nucleus ventral partipsiGiV0.5
Caudal medullary reticular formationipsiCMdD-0.5
Medial medullary reticular nucleusipsiMMdD1
Medial subnucleus reticularis ventralisipsiMSRV1
Parvicellular reticular nucleusipsiPCRt1
Subcoeruleus nucleusipsiSubC1
Medulla oblongataipsiMeOb-0.5
C1 adrenaline cellsipsiC1-0.5
Ambiguus nucleusipsiAmb-0.5
Accessory trigeminal nucleusipsiAcs5-0.5
Vestibular nucleiipsiVnc-0.5
Nucleus of the solitary tractipsiSol-0.5
Nucleus of the solitary tract caudal partipsiSolca3
Medial part of the commissural subnucleusipsiMSolC3
Nucleus of the solitary tract intermediate partipsiSolIM2
Nucleus of the solitary tract ventral partipsiSolV2
Nucleus of the solitary tract ventrolateral partipsiSolVL2
Nucleus of the solitary tract caudal visceral sensory partipsiSolcacvs-0.5
Raphe nucleiipsiRAN3
Caudal raphe nucleiipsiRANc3
Raphe magnus nucleusipsiRMg3
Raphe magnus nucleus caudal partipsiRMgc-0.5
Raphe obscurus nucleusipsiROb3
Raphe obscurus nucleus rostral partipsiRObr-0.5
Raphe obscurus nucleus ventral partipsiRObV2
Raphe pallidus nucleusipsiRPa3
Raphe pallidus nucleus rostral partipsiRParo-10
Ventral lateral medulla oblongataipsiMVL-0.5
Rostral ventrolateral medullaipsiRVLM3
A1 noradrenergic cellsipsiA1-0.5
Nucleus interfascicularis hypoglossiipsiNIFH-0.5
Inferior olive cap of Kooy of the medial nucleusipsiIOK-0.5
Superior oliveipsiSuOLi-0.5
Paragigantocellular reticular nucleusipsiPGi1
Lateral paragigantocellular nucleusipsiLPGi3
Retrofacial paragigantocellular reticular nucleusipsiRPGi-0.5
Retrotrapezoid nucleusipsiRTN3
Rostral ventral medulla oblongataipsiRVMeO-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm4
Medulla oblongata rostroventralipsiMeObRV-0.5
Dorsomedial hypothalamic nucleusipsiDMHy1
Lateral zoneipsiLHA4
Lateral hypothalamic areaipsiLH1
Lateral hypothalamic area posterior partipsiLHAp0.5
Tuberal division of the lateral hypothalamic areaipsiLHTC0.5
Anterior hypothalamic areaipsiAHA0
Dorsomedial hypothalamic nucleus medial partipsiDMmp-0.5
Subparaventricular zoneipsiSuPZ1
Periventricular zoneipsiPVZ1
Arcuate nucleusipsiArc1
Paraventricular hypothalamic nucleus dorsal partipsiPaD-0.5
Paraventricular hypothalamic nucleus posterior part [Periventricular zone anterior region]ipsiPaPo-0.5
Paraventricular hypothalamic nucleus ventral part [Periventricular zone anterior region]ipsiPaV-0.5
Ventrolateral paraventricular hypothalamic nucleusipsiPaVM-0.5
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP3
Paraventricular hypothalamic nucleus parvicellular division dorsal partipsiPaPcD-0.5
Paraventricular hypothalamic nucleus lateral parvocellular partipsiLPPa2
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP0.5
Paraventricular nucleus of the hypothalamus magnocellular division anterior magnocellular partipsiPaAMa0.5
Paraventricular hypothalamic nucleusipsiPa-0.5
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag0
Paraventricular hypothalamic nucleus magnocellular division posterior partipsiPaMagP1.5
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo1
Paraventricular hypothalamic nucleus dorsal parvocellular divisionipsiPavPoD2.5
Paraventricular nucleus lateral parvocellular partipsiPaLp0.5
Paraventricular hypothalamic nucleus parvocellular division ventral partipsiPavPoV0.5
Paraventricular hypothalamic nucleus parvocellular division lateroposterior subnucleiipsiPavPoLP3
Dorsomedial parvocellular paraventricular hypothalamic nucleusipsiPavPoDm-0.5
Paraventricular hypothalamic nucleus rostral partipsiPaRo-0.5
Paraventricular nucleus dorsal partipsiPaDo3
Paraventricular nucleus posterior partipsiPaPos3
Paraventricular nucleus ventral partipsiPaVe3
Supraoptic nucleus [Supraoptic region]ipsiSO0
A11 dopamine cellsipsiA113
Perifornical nucleusipsiPeF4
Retrochiasmatic areaipsiRCh1
Basal retrochiasmatic areaipsiBRCh1
Parafascicular thalamic nucleus prerubral partipsiPFPR1
Reuniens thalamic nucleusipsiRe1
Zona incertaipsiZI1
Neurons in the lateral funiculus cervical level C3ipsiNLFC3-0.5
Cingulate cortex area 3 vasoregulatory regionipsiCg3vr1
Cingulate cortex area 3 vasoregulatory region layer 3ipsiCg3vrL31
Cingulate cortex area 3 vasoregulatory region layer 4ipsiCg3vrL41
Cingulate cortex area 3 vasoregulatory region layer 5ipsiCg3vrL51
Cingulate cortex area 3 vasoregulatory region layer 6ipsiCg3vrL61
Infralimbic cortexipsiIL1
Insular cortexipsiICX0.5
Lateral agranular prefrontal cortexipsiAGl0.5
Medial agranular prefrontal cortexipsiAGm0.5
Sensory regionsipsiSR0
Primary somatosensory cortexipsiS10.5
Visual regionsipsiVR0.5
Lateral spinal nucleusipsiMESLn-0.5
Reticulated division of the spinal cord layer 5 T4ipsiSCL5T4r-0.5
Ventral lateralmost region of the spinal cord layer 4 T4ipsiSCL4T4vL0.5
Lateral half of the spinal cord layer 7 T4ipsiSCL7T4Lh-0.5
Dorsal root ganglion L3ipsiDRGL3-10
Dorsal root ganglion L4ipsiDRGL4-10
Dorsal root ganglion L5ipsiDRGL5-10
Dorsal root ganglion L6ipsiDRGL6-10
Greater splanchnic nerveipsiAutoNGS2
PeritoneumipsiOrgPeri-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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