University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Caudal raphe nuclei left


Abbreviation
RANc
Color       
Superior regionsRaphe nuclei

SynonymsAbbr.Language
Caudal raphe nucleiRANcEng
Caudal raphe region Eng

SubregionsSide
Midline in caudal raphe groupsleft

Output to

NameSideAbbr.WeightDetails
Red nucleusipsiR-0.5
Ventral tegmental area A10ipsiVTA-0.5
Medial reticular formationipsiRFm3
Hypoglossal nucleusipsi12S1
Lateral paragigantocellular nucleusipsiLPGi1
Medial mammillary nucleusipsiMMn-0.5
Reticular thalamic nucleus ventral partipsiRtV0
Amygdaloid complexipsiAC-0.5
Medial prefrontal cortexipsimPFC3
Interpeduncular nucleusipsiIP-0.5
Ventral horn C1ipsiVHC1-0.5
Cervical segment 2ipsiCS2-0.5
Spinal cord layers C2ipsiSCLC23
Ventral horn C2ipsiVHC2-0.5
Cervical segment 3ipsiCS3-0.5
Spinal cord layers C3ipsiSCLC33
Ventral horn C3ipsiVHC3-0.5
Ventral horn C4ipsiVHC4-0.5
Ventral horn C5ipsiVHC5-0.5
Ventral horn C6ipsiVHC6-0.5
Ventral horn C7ipsiVHC7-0.5
Ventral horn C8ipsiVHC8-0.5
Intermediolateral cell column T1ipsiIMLT13
Spinal cord layers T1ipsiSCLT1-0.5
Intermediolateral cell column T2ipsiIMLT23
Spinal cord layers T2ipsiSCLT2-0.5
Intermediolateral cell column T3ipsiIMLT33
Intermediolateral cell column T4ipsiIMLT43
Intermediolateral cell column T5ipsiIMLT53
Intermediolateral cell column T6ipsiIMLT63
Intermediolateral cell column T7ipsiIMLT73
Intermediolateral cell column T8ipsiIMLT83
Intermediolateral cell column T9ipsiIMLT93
Intermediolateral cell column T10ipsiIMLT103
Intermediolateral cell column T11ipsiIMLT113
Intermediolateral cell column T12ipsiIMLT123
Intermediolateral cell column T13ipsiIMLT133
Lumbar enlargementipsiLSegE-0.5
Intermediolateral cell column L1ipsiIMLL13
Intermediolateral cell column T1contraIMLT11
Intermediolateral cell column T2contraIMLT21
Intermediolateral cell column T3contraIMLT31
Intermediolateral cell column T4contraIMLT41
Intermediolateral cell column T5contraIMLT51
Intermediolateral cell column T6contraIMLT61
Intermediolateral cell column T7contraIMLT71
Intermediolateral cell column T8contraIMLT81
Intermediolateral cell column T9contraIMLT91
Intermediolateral cell column T10contraIMLT101
Intermediolateral cell column T11contraIMLT111
Intermediolateral cell column T12contraIMLT121
Intermediolateral cell column T13contraIMLT131
Intermediolateral cell column L1contraIMLL11
Hypoglossal nerveipsi12P2
Ventral stomach wallipsiOrgsStomVWS-0.5
Ventral stomach wallcontraOrgsStomVWS-0.5
Ventral surface of the colon descendingipsiOrgsColonDV-10
Lateral surface of the colon descendingipsiOrgsColonDL-10
Tail skinipsiOrgBSTail-10
Adrenal glandipsiADRE1
Adrenal medullaipsiOrgsAM1
Gastrocnemius muscleipsiMuscGC-10
Bulbospongiosus muscleipsiMuscbsp-0.5
OvaryipsiOrgOvar-10
KidneyipsiOrgsKid2
Detrusor muscle of the urinary bladderipsiOrgUrBLaDe-10
ThymusipsiThym3
SpleenipsiOrgSPL-0.5
KidneycontraOrgsKid2
Trachea wallipsiOrgsTrasW-0.5

Input from

NameSideAbbr.WeightDetails
Vestibular nucleiipsiVnc3
Vestibular nucleicontraVnc2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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