University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Zona incerta rostral part left


Abbreviation
ZIR
Color       
Superior regionsZona incerta

SynonymsAbbr.Language
Zona incerta rostral partZIR 
Rostral zona incerta  
Rostral pole of the zona incerta Eng
Rostral sector zona incerta Eng

SubregionsSide
Dorsolateral aspect of rostral extent of zona incertaleft
Zona incerta rostral poleleft

Output to

NameSideAbbr.WeightDetails
Central gray mesencephalic part inferior colliculus levelipsiCGMinf0.5
Central gray mesencephalic part superior colliculus levelipsiCGMsc1.5
Nucleus of DarkschewitschipsiDk3
Oculomotor nucleusipsi30
External cortex of the inferior colliculusipsiECIC0
Substantia nigra A9ipsiSN-0.5
Pedunculopontine tegmental nucleusipsiPPTg-0.5
Edinger Westphal nucleusipsiEW2
Dorsal motor nucleus of vagusipsi103
Dorsal raphe nucleus caudal partipsiDRC-0.5
Dorsal raphe nucleus dorsomedial subdivisionipsiDRdm-0.5
Dorsal raphe nucleus ventromedial to interfascicular subdivisionipsiDRvmif-0.5
Lateral preoptic areaipsiLPO1
Suprachiasmatic nucleusipsiSCh1
Subfornical organipsiSFO-0.5
Reticular thalamic nucleus rostral partipsiRtr2
Zona incerta caudal partipsiZIC3
Medial globus pallidusipsiMGP-0.5
Cingulate cortexipsiCg3
Frontal association cortexipsiFrA2
Temporal association area 3ipsiTe30
Primary auditory cortexipsiAu12
Primary visual cortexipsiV12
Spinal cord layers C1ipsiSCLC12
Spinal cord layers C2ipsiSCLC22
Spinal cord layers C3ipsiSCLC32
Spinal cord layers T1ipsiSCLT12
Spinal cord layers T2ipsiSCLT22
Spinal cord layers T3ipsiSCLT32
Spinal cord layers T4ipsiSCLT42
Zona incertacontraZI-0.5

Input from

NameSideAbbr.WeightDetails
Dorsolateral periaqueductal grayipsiDLPAG3
External cortex of the inferior colliculusipsiECIC0
Superior colliculusipsiSC0.5
Substantia nigra compact part dorsal tieripsiSNCD1
Substantia nigra compact part dorsal tier medial divisionipsiSNCDm-0.5
Tuberal nucleusipsiTU-0.5
Ventromedial hypothalamic nucleus anterior partipsiVMHA0.5
Ventromedial hypothalamic nucleus central partipsiVMHC2
Ventromedial hypothalamic nucleus dorsomedial partipsiVMHDM-0.5
Dorsal part of the lateral geniculate complexipsiLGd0
Submedius thalamic nucleusipsiSub-0.5
Subfornical organipsiSFO-0.5
Zona incerta caudal partipsiZIC3
RetinaipsiRET0
Basolateral amygdaloid nucleusipsiBL2
Central amygdaloid nucleusipsiCe2
Medial amygdaloid nucleusipsiMe2
Medial amygdaloid nucleus anterodorsal partipsiMeAD2
Medial amygdaloid nucleus posteroventral partipsiMePV1
Cingulate cortexipsiCg-0.5
Temporal association area 3ipsiTe30
Primary visual cortexipsiV10
Neocortex layer 5ipsiNEOCXL5-0.5
Tuberal nucleuscontraTU-0.5
Ventromedial hypothalamic nucleus anterior partcontraVMHA0.5
Ventromedial hypothalamic nucleus central partcontraVMHC0.5
Ventromedial hypothalamic nucleus dorsomedial partcontraVMHDM1
Zona incerta caudal partcontraZIC3

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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