University of Rostock

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Rat connectome



Dorsal raphe nucleus dorsomedial subdivision left


Abbreviation
DRdm
Color       
Superior regionsDorsal raphe nucleus

SynonymsAbbr.Language
Dorsomedial zone of the dorsal raphe nucleus Eng
Dorsal raphe nucleus dorsomedial subdivisionDRdmEng
Dorsomedial subregion of the dorsal raphe nucleus Eng
Dorsomedial nucleus raphe dorsalis Eng

SubregionsSide
Dorsal raphe nucleus dorsomedial subdivision medial partleft
Dorsal raphe nucleus dorsomedial subdivision rostral partleft
Central part of the dorsomedial zone of the dorsal raphe nucleusleft
Dorsal raphe nucleus dorsomedial subdivision ventral partleft

Output to

NameSideAbbr.WeightDetails
Substantia nigra A9ipsiSN2
Ventral tegmental area A10ipsiVTA2.5
Barringtons nucleus rostral partipsiBarR2
Locus coeruleusipsiLC2.5
Locus coeruleus caudal partipsiLCca1
Locus coeruleus rostral partipsiLCRo2
Mid ventral locus coeruleusipsiLCmiv1
Prepositus nucleusipsiPr1
Pontine reticular nucleusipsiPRN2.5
Parabrachial nucleusipsiPB2.5
Gigantocellular reticular nucleusipsiGi2
Mesencephalic trigeminal nucleusipsiMe5-0.5
Principal sensory trigeminal nucleusipsiPr52
Superior vestibular nucleusipsiSuVe0.5
Superior vestibular nucleus caudal partipsiSuVeca0.5
Superior vestibular nucleus medial caudal partipsiSuVemc0.5
Superior vestibular nucleus rostral poleipsiSuVeR0.5
Superior vestibular nucleus rostral pole medial partipsiSuVeRm1
Medial vestibular nucleusipsiMVe1
Dorsal section of rostral half of medial vestibular nucleus caudal partipsiMVNrD0.5
Medial vestibular nucleus rostral partipsiMVeR0.5
Medial vestibular nucleus rostral part lateral partipsiMVeRL0.5
Medial vestibular nucleus rostral part medial partipsiMVeRm1
Lateral vestibular nucleusipsiLVe0.5
Lateral vestibular nucleus alpha part caudal partipsiLVNac0.5
Dorsomedial part of lateral vestibular nucleus alpha part caudal partipsiLVNacdm0.5
Lateral part of rostral half of lateral vestibular nucleus alpha part caudal partipsiLVNacRL0.5
Dorsomedial part of rostral lateral vestibular nucleus alpha partipsiLVNaDmr0.5
Ventral part of rostral lateral vestibular nucleus alpha partipsiLVNaRV0.5
Lateral vestibular nucleus beta partipsiLVNb0.5
Rostral part of lateral vestibular nucleus beta partipsiLVNbR0.5
Dorsomedial part of lateral vestibular nucleus gamma partipsiLVNgdm0.5
Medial part of lateral vestibular nucleus gamma partipsiLVNgM0.5
Medioventral part lateral vestibular nucleus gamma partipsiLVNgmv0.5
Inferior vestibular nucleusipsiIVN1
Inferior vestibular nucleus lateral rostral partipsiIVNLR0.5
Lateroventral part of inferior vestibular nucleus rostral partipsiINVRLv0.5
Ventral medulla oblongataipsiVMeO-0.5
Diagonal band of BrocaipsiDBB2
Medial septal nucleusipsiMS2
Basal nucleus MeynertipsiB2
Substantia innominataipsiSI2
Lateral hypothalamic areaipsiLH2.5
Dorsal hypothalamic areaipsiDA-0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Posterior hypothalamic areaipsiPHA2.5
Ventromedial hypothalamic nucleusipsiVMH2
Suprachiasmatic nucleusipsiSCh1
ThalamusipsiT-0.5
Anterodorsal thalamic nucleus dorsal partipsiADd1
Anteroventral thalamic nucleus medial partipsiAVm1
Dorsal part of posterior subdivision of anteroventral thalamic nucleusipsiAVPD1
Intralaminar nuclei of the dorsal thalamusipsiILM2.5
Parafascicular thalamic nucleusipsiPF-0.5
Ventral posteromedial thalamic nucleusipsiVPM2
Posterior groupipsiPTG2.5
Reticular thalamic nucleusipsiRt1
Zona incertaipsiZI2
Lateral habenular nucleusipsiLHb1
Amygdaloid complexipsiAC2.5
Basolateral amygdaloid nucleusipsiBL0.5
Bed nucleus of the stria terminalisipsiBST2.5
Bed nucleus of the stria terminalis lateral division dorsal partipsiBSTLD3
Bed nucleus of the stria terminalis lateral division ventral partipsiBSTLV3
Central amygdaloid nucleus lateral divisionipsiCeL3
Central amygdaloid nucleus medial divisionipsiCeM3
Central amygdaloid nucleus shellipsiCeSh1
Medial globus pallidusipsiMGP2
Accumbens nucleusipsiAc2
Caudate putamenipsiCPu2
Medial striatumipsiCPum2
Ventral striatumipsiCPuv2.5
Lateral striatumipsiCPul2
HippocampusipsiHIPP1
Piriform cortexipsiPir3
Anterior piriform cortexipsiAPIRC1
Posterior piriform cortexipsiPPIRC1
Frontal association cortexipsiFrA1
Frontoparietal cortex at the border between lateral agranular prefrontal cortex and primary somatosensory cortexipsiFPCbAGl1.5
Medial prefrontal cortexipsimPFC-0.5
Primary somatosensory cortex barrel fieldipsiS1BF3
Visual regionsipsiVR1
Dorsal geniculate nucleus lateral partipsiDLGl1
Lateral geniculate complexipsiLG2
Olfactory bulb A16ipsiMOB1
Septal regionipsiSER-0.5
4th ventricleipsi4V1.5
Lateral ventricle ependymal wallipsiLVew2
Thoracal segment 1ipsiT1-0.5
Thoracal segment 2ipsiT2-0.5
Thoracal segment 3ipsiT3-0.5
Thoracal segment 4ipsiT4-0.5
Prepositus nucleuscontraPr0.5
Parabrachial nucleuscontraPB1
Mesencephalic trigeminal nucleuscontraMe5-0.5
Principal sensory trigeminal nucleuscontraPr51
Superior vestibular nucleuscontraSuVe1
Medial vestibular nucleuscontraMVe0.5
Lateral vestibular nucleuscontraLVe0.5
Parafascicular thalamic nucleuscontraPF-0.5
Ventral posteromedial thalamic nucleuscontraVPM0.5
Medial striatumcontraCPum1
Lateral striatumcontraCPul1
Frontoparietal cortex at the border between lateral agranular prefrontal cortex and primary somatosensory cortexcontraFPCbAGl-0.5

Input from

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG1
Substantia nigra A9ipsiSN2
Laterodorsal tegmental nucleusipsiLDTg2
Ventral tegmental nucleusipsiVTg1
Barringtons nucleusipsiBar1
Locus coeruleusipsiLC0.5
Prepositus nucleusipsiPr2
Lateral parabrachial nucleusipsiLPB2
Parabrachial nucleus medialipsiPBnMe2
Bulbar reticular formation dorsomedial nucleiipsiBRFdm1
Lateral reticular nucleusipsiLRt1
Area postremaipsiAP1
Medial vestibular nucleus dorsomedial parvicellular partipsiMVePCdm1
Paragigantocellular reticular nucleusipsiPGi2
Preoptic regionipsiPREO1
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area perifornical partipsiPFx2
Peduncular part of lateral hypothalamusipsiPLH-0.5
Arcuate nucleusipsiArc3
Paraventricular hypothalamic nucleusipsiPa1
Zona incerta rostral partipsiZIR-0.5
Tuber cinereum areaipsiTC1
Lateral habenular nucleusipsiLHb3
Bed nucleus of the stria terminalisipsiBST2
Central amygdaloid nucleusipsiCe1
Caudal piriform cortex layer 3ipsiPirCL31.5
Prelimbic cortexipsiPrL-0.5
Infralimbic cortexipsiIL-0.5
Insular cortexipsiICX0.5
Medial prefrontal cortexipsimPFC3

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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