University of Rostock

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Rat connectome



Spinal cord layers C1 left


Abbreviation
SCLC1
Color       
Superior regionsCervical segment 1

SynonymsAbbr.Language
Spinal cord layers C1SCLC1Eng

SubregionsSide
Area X C1left
Dorsal horn C1left
Ventral horn C1left

Output to

NameSideAbbr.WeightDetails
MesencephalonipsiMEC0
Central grayipsiCG2
Superior colliculusipsiSC2
Anterior lobeipsiAnL-0.5
Cerebellar lobule 8ipsiCERL8-0.5
Cerebellar lobule 9ipsiCERL9-0.5
Mesencephalic reticular formationipsiMRF2
Gigantocellular reticular nucleusipsiGi0
Lateral reticular nucleusipsiLRt0
Parvicellular reticular nucleusipsiPCRt1
Principal sensory trigeminal nucleusipsiPr5-2
Ventral part of spinal trigeminal nucleus oral partipsiSp5OV-0.5
Vasodepressor part of caudal midline medulla oblongataipsiCMeObmVd3
External cuneate nucleusipsiECu-0.5
Nucleus ZipsiZ1
Medial septal nucleusipsiMS2
Substantia innominataipsiSI2
Lateral hypothalamic areaipsiLH2
Rostral part of suprachiasmatic nucleus ventrolateral partipsiSCnVLR1
ThalamusipsiT0
Dorsal thalamusipsiDOR1
Anterior group of the dorsal thalamusipsiATN2
Central medial thalamic nucleusipsiCM0
Centrolateral thalamic nucleusipsiCL2
Parafascicular thalamic nucleusipsiPF1.5
Parafascicular thalamic nucleus medial partipsiPFM2
Posterior thalamic nuclear groupipsiPo2
Posterior thalamic nuclear group dorsocaudal partipsiPoDC1.5
Submedius thalamic nucleusipsiSub2
Ventrobasal complexipsiVB2
Ventral posterolateral thalamic nucleus posterior partipsiVPLP1.5
Medial part of ventral posteromedial thalamic nucleusipsiVPMm1.5
Ventrobasal complex lateral part caudal partipsiVBLC0
Ventrobasal complex medial partipsiVBM3
Lateral posterior thalamic nucleusipsiLP3
Mediolateral thalamic nucleusipsiMeLT2
Reticular thalamic nucleus lateral partipsiRtL1.5
Zona incertaipsiZI2
Amygdaloid complexipsiAC2
Globus pallidusipsiGP2
Ventral pallidumipsiVP2
Caudate putamenipsiCPu2
Dorsal striatumipsiCPud2
Ventral striatumipsiCPuv2
Medial geniculate nucleus caudal partipsiMGc2
Medial geniculate nucleus dorsal partipsiMGD0
Medial geniculate nucleus medial partipsiMGM0
Medial geniculate nucleus ventral partipsiMGV0
Spinal cord layers C1ipsiSCLC1-2
Superior colliculus caudal partcontracSC2
Mesencephalic reticular formationcontraMRF1
Parvicellular reticular nucleuscontraPCRt1
Ventral part of spinal trigeminal nucleus oral partcontraSp5OV-0.5
Medial septal nucleuscontraMS2
Substantia innominatacontraSI2
Lateral hypothalamic areacontraLH2
Dorsal thalamuscontraDOR2
Anterior group of the dorsal thalamuscontraATN2.5
Central medial thalamic nucleuscontraCM0
Centrolateral thalamic nucleuscontraCL2
Parafascicular thalamic nucleuscontraPF2.5
Submedius thalamic nucleuscontraSub2
Ventrobasal complex lateral part caudal partcontraVBLC2
Mediolateral thalamic nucleuscontraMeLT2.5
Amygdaloid complexcontraAC2
Globus palliduscontraGP2
Ventral pallidumcontraVP2
Caudate putamencontraCPu2
Dorsal striatumcontraCPud2
Ventral striatumcontraCPuv2
Bulbocavernosus muscleipsiMuscBCV-10
Ischiocavernosus muscleipsiMuscicav-10

Input from

NameSideAbbr.WeightDetails
Red nucleusipsiR1
Superior colliculusipsiSC2
Superior colliculus deep layersipsiSCd1
Peduncularpontine nucleusipsiPPN-0.5
Substantia nigra A9ipsiSN0
Retrorubral nucleusipsiRR1
Sublaterodorsal tegmental nucleusipsiSLD-0.5
Pedunculopontine tegmental nucleus pars compactaipsiPPNC1
Pedunculopontine tegmental nucleus pars dissipataipsiPPNd3
Interstitial nucleus of CajalipsiInC-0.5
Locus coeruleusipsiLC-0.5
Magnocellular reticular nucleus alpha partipsiNRMCa2
Magnocellular reticular nucleus beta partipsiNRMCb2
Ventral reticular formationipsiVRF-0.5
Nucleus reticular ventralis pars betaipsiRVb2
Nucleus reticularis ventralis pars alphaipsiRVa2
Mesencephalic reticular formationipsiMRF1
Pontine reticular nucleus oral partipsiPnO3
Pontine reticular nucleus caudal partipsiPNC3
Peribrachial regionipsiPBR2
Cuneiforme nucleusipsiCnF-0.5
Koelliker Fuse nucleusipsiKF1
Parabrachial nucleus lateral crescentipsiPBlc1
Medial parabrachial nucleus external partipsiMPBE1
Medial parabrachial nucleus medial divisionipsiMPBM1
Parabrachial nucleus ventral partipsiPBV1
Gigantocellular reticular nucleusipsiGi2
Gigantocellular reticular nucleus alpha partipsiGiA2
Lateral reticular nucleusipsiLRt2
Subnucleus reticularis dorsalis dorsal partipsiSRDD2
Medial subnucleus reticularis ventralisipsiMSRV2
Subcoeruleus nucleusipsiSubC-0.5
Spinal trigeminal nucleus caudal partipsiSp5C2
Spinal trigeminal nucleus interpolar part border regionipsiSp5Ib2
Spinal trigeminal nucleus interpolar part dorsolateralipsiSp5IdL2
Spinal trigeminal nucleus interpolar part ventrolateral magnocellularipsiSp5Imc2
Spinal trigeminal nucleus interpolar part ventrolateral parvocellularipsiSp5IvL2
Spinal trigeminal nucleus ventral partipsiSp5ncV-2
Vestibular nucleiipsiVnc1.5
Medial vestibular nucleusipsiMVe3
Medial vestibular nucleus caudal partipsiMVeP2
Lateral vestibular nucleusipsiLVe3
Inferior vestibular nucleusipsiIVN3
Raphe magnus nucleusipsiRMg2
Raphe obscurus nucleusipsiROb2
Raphe obscurus nucleus rostral partipsiRObr2
Raphe pallidus nucleusipsiRPa2
Raphe pallidus nucleus rostral partipsiRParo2
Cuneate nucleus caudal partipsiCuC1
Cuneate nucleus rostral partipsiCuRo0.5
Middle part of cuneate nucleusipsiCuM0.5
GracileipsiGra0.5
Nucleus of BischoffipsiNBi1.5
Nucleus interfascicularis hypoglossiipsiNIFH2
Lateral paragigantocellular nucleusipsiLPGi2
Hypothalamic zonesipsiHYPOz2
Lateral zoneipsiLHA0.5
Lateral hypothalamic areaipsiLH-0.5
Lateral hypothalamic area rostral partipsiLHro3
Ventromedial hypothalamic nucleusipsiVMH3
Ventromedial hypothalamic nucleus ventral partipsiVMHV1
Arcuate nucleusipsiArc1
Paraventricular nucleus of the hypothalamus magnocellular division posterior magnocellular partipsiPaAMp1
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP3
Paraventricular hypothalamic nucleus lateral parvocellular partipsiLPPa3
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP3
Paraventricular hypothalamic nucleusipsiPa-0.5
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo-0.5
Paraventricular hypothalamic nucleus dorsal parvocellular divisionipsiPavPoD3
Paraventricular hypothalamic nucleus parvocellular division dorsomedial capsular partipsiPavPodmc3
Paraventricular hypothalamic nucleus parvocellular division posterior partipsiPavPoP3
Paraventricular hypothalamic nucleus parvocellular division ventral partipsiPavPoV3
Paraventricular hypothalamic nucleus periventricular partipsiPapv3
Anterolateral regionipsiMMna2
A11 dopamine cellsipsiA112
Perifornical nucleusipsiPeF0.5
Retrochiasmatic areaipsiRCh1
Ventromedial thalamic nucleus dorsolateral partipsiVMDL3
Subparafascicular thalamic nucleusipsiSPF2
Subparafascicular thalamic nucleus dorsal partipsiSPFd2
Subparafascicular thalamic nucleus medial partipsiSPFme2
Subparafascicular thalamic nucleus peripheral partipsiSPFpe1
Subparafascicular thalamic nucleus rostral partipsiSPFr2.5
Subparafascicular thalamic nucleus ventral partipsiSPFv2
Zona incertaipsiZI-0.5
Zona incerta caudal partipsiZIC1
Zona incerta magnocellular partipsiZIMag2
Zona incerta rostral partipsiZIR2
Basal gangliaipsiBG0
PallidumipsiPAL0
Caudate putamenipsiCPu0
Subthalamic nucleus caudal partipsiSThc0.5
Subthalamic nucleus rostral partipsiSThr1
Agranular insular cortexipsiAI1
Primary somatosensory cortexipsiS12
Secondary somatosensory cortexipsiS20
Spinal cord layers C1ipsiSCLC1-2
Spinal cord layer 5 C1ipsiSCL5C1-2
Spinal cord layer 1 C1ipsiSCL1C1-2
Spinal cord layer 2 C1ipsiSCL2C1-2
Spinal cord layers C2ipsiSCLC2-2
Spinal cord layer 5 C2ipsiSCL5C2-2
Spinal cord layer 2 C2ipsiSCL2C2-2
Red nucleuscontraR3
Red nucleus dorsomedial partcontraRdm3
Red nucleus rostral partcontraRnRo3
Red nucleus ventrolateral partcontraRveL-0.5
Superior colliculus caudal partcontracSC2
Substantia nigra A9contraSN0
Ventrolateral tegmental areacontraVLTg-0.5
Koelliker Fuse nucleuscontraKF2
Parabrachial nucleus lateral crescentcontraPBlc2
Medial parabrachial nucleus external partcontraMPBE2
Medial parabrachial nucleus medial divisioncontraMPBM2
Gigantocellular reticular nucleuscontraGi2
Medial vestibular nucleus caudal partcontraMVeP2
Inferior vestibular nucleuscontraIVN2
Hypothalamic zonescontraHYPOz1
Ventromedial hypothalamic nucleus ventral partcontraVMHV0.5
Retrochiasmatic areacontraRCh0.5
Basal gangliacontraBG0
PallidumcontraPAL0
Caudate putamencontraCPu0
Subthalamic nucleus caudal partcontraSThc1
Subthalamic nucleus rostral partcontraSThr2
Insular cortex caudal partcontraICXca3
Ventral part of the caudal insular cortex layer 5contraICXvcaL53
Primary somatosensory cortexcontraS13
Primary somatosensory cortex ventral half of the caudal part layer 5contraS1vcL53
Rostral part of the secondary somatosensory cortex layer 5contraS2RoL53

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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