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Rat connectome



Dorsal raphe nucleus caudal part left


Abbreviation
DRC
Color       
Superior regionsDorsal raphe nucleus

SynonymsAbbr.Language
Dorsal raphe nucleus caudal partDRCEng
 DRcp 
Dorsal raphe nucleus caudal pole  
Caudal dorsal raphe nucleus  
Dorsal raphe nucleus caudal extent Eng
Caudal part of nucleus raphe dorsalis Eng
Dorsal raphe nucleus caudal partDRcEng
Area dorsomedial to the dorsal tegmental nucleus Eng

SubregionsSide
Dorsal extent of the dorsal raphe nucleus caudal partleft
Dorsal raphe nucleus caudal part non serotoninergic populationleft
Dorsal raphe nucleus caudal part serotoninergic populationleft
Ventral part of the caudal dorsal raphe nucleusleft
Serotoninergic population of the caudal extent of the dorsal raphe nucleusleft
Nonserotoninergic population of the caudal extent of the dorsal raphe nucleusleft
Dorsal part of the caudal subregion of the dorsal raphe nucleusleft
Midcaudal dorsal raphe nucleus caudal partleft
Mid-rostral and caudal part of the dorsal raphe nucleusleft

Output to

NameSideAbbr.WeightDetails
Central grayipsiCG3
Central gray dorsal partipsiCGD-0.5
Central gray ventral areaipsiCGva2
Central gray pons partipsiCGP2.5
Supraoculomotor central grayipsiSOCG3
Nucleus of DarkschewitschipsiDk0
Oculomotor nucleusipsi30
Periaqueductal grayipsiPAG-0.5
Periventricular gray matteripsiPVG2
Superior colliculusipsiSC1
Peduncularpontine nucleusipsiPPN3
Substantia nigra A9 dorsal halfipsiSNDh2
Substantia nigra compact partipsiSNC2
Ventral tegmental area A10ipsiVTA2
Laterodorsal tegmental nucleusipsiLDTg3
Medial midbrain tegmentumipsiTGMmi-2
Medial medullary tegmentumipsiTGMM1
Dorsal tegmental nucleus lateral partipsiDLTN-0.5
Edinger Westphal nucleusipsiEW3
Dorsolateral part of the brachium conjunctivumipsisucepDL0
PonsipsiP1
Locus coeruleusipsiLC3
Locus coeruleus rostral partipsiLCRo-0.5
Mid ventral locus coeruleusipsiLCmiv1
Nucleus incertusipsiNI3
Nucleus OipsiO3
Pons oral partipsiPor-0.5
Mesencephalic reticular formationipsiMRF-0.5
Pontine reticular nucleusipsiPRN2.5
Lateral parabrachial nucleusipsiLPB2
Parabrachial nucleus medialipsiPBnMe2
Gigantocellular reticular nucleusipsiGi-0.5
Parvicellular reticular nucleusipsiPCRt1
Medulla oblongataipsiMeOb1
Spinal trigeminal nucleus caudal partipsiSp5C-0.5
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus dorsal partipsiDRD3
Dorsal raphe nucleus lateral wingipsiDRlw2
Dorsal raphe nucleus rostral partipsiDRr3
Dorsal raphe nucleus ventral partipsiDRV2
Median raphe nucleusipsiMnR3
Midline in the caudal part of the median raphe nucleus caudal portionipsiMnRmic2
Midline apneic siteipsiMAS0
Pontine raphe nucleusipsiPnR2.5
Raphe magnus nucleusipsiRMg2.5
Rostral ventrolateral medullaipsiRVLM2
Mediaolateral part of the rostral ventrolateral medullaipsiMLRVLM1
Diagonal band of BrocaipsiDBB3
Nucleus of the horizontal limb of the diagonal bandipsiHDB3
Medial septal nucleusipsiMS3
Substantia innominataipsiSI2
Lateral preoptic areaipsiLPO1
Medial preoptic areaipsiMPA2
Medial preoptic nucleusipsiMPO0.5
Dorsal tuberomammillary nucleusipsiDTM0.5
Surface of the ependymal lining of the commissural organipsiSELSCO-2
Vascular organ of the lamina terminalisipsiVOLT-0.5
HypothalamusipsiHYPO1
Lateral hypothalamic area posterior partipsiLHAp1
Anterior hypothalamic areaipsiAHA3
Area lateralis hypothalamicus posterior [Regio hypothalamus caudalis]ipsiDMrhc2
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Posterior hypothalamic areaipsiPHA1
Posterior hypothalamic nucleus rostral partipsiPHRo3
Arcuate nucleusipsiArc-0.5
Dorsomedial hypothalamic nucleus [Periventricular zone]ipsiDMpz2
Paraventricular hypothalamic nucleus parvicellular part [Periventricular zone anterior region]ipsiPaPc3
Paraventricular hypothalamic nucleusipsiPa-0.5
Paraventricular nucleus medial partipsiPame-0.5
Periventricular hypothalamic nucleusipsiPe3
Periventricular hypothalamic nucleus parvicellular partipsiPepcp-0.5
Posterior periventricular nucleusipsiPeP0.5
Suprachiasmatic nucleusipsiSCh3
Outermost part of the medial mammillary nucleus bodyipsiOmMMnB-0.5
Supramammillar nucleus medial partipsiSuMM1
A8 dopamine cells retrorubral groupipsiRRF-0.5
Anteroventral thalamic nucleusipsiAV0
Central medial thalamic nucleusipsiCM1
Centrolateral thalamic nucleusipsiCL2
Paracentral thalamic nucleusipsiPC2
Paracentral thalamic nucleus caudal partipsiPC-c0
Paracentral thalamic nucleus rostral partipsiPC-r1
Parafascicular thalamic nucleusipsiPF2
Parafascicular thalamic nucleus lateral partipsiPFL3
Parafascicular thalamic nucleus medial partipsiPFM1
Rhomboid thalamic nucleusipsiRh3
Mediodorsal thalamic nucleusipsiMD3
Intermediodorsal thalamic nucleusipsiIMD1
Mediodorsal thalamic nucleus medial partipsiMDM1
Perireuniensis nucleusipsiPReu1
Submedius thalamic nucleusipsiSub2
Midline group of the dorsal thalamusipsiMTN-0.5
Paratenial thalamic nucleusipsiPT3
Paraventricular thalamic nucleus anterior partipsiPVA2
Paraventricular thalamic nucleus medial partipsiPVM2
Paraventricular thalamic nucleus middle divisionipsiPVMiD-0.5
Paraventricular thalamic nucleus posterior partipsiPVP3
Reuniens thalamic nucleusipsiRe3
Nucleus reuniens rostral division ventral partipsiRERv1
Reuniens thalamic nucleus rostrolateral divisionipsiRerl1
Subfornical organipsiSFO-0.5
Ventral posterior thalamic complexipsiVPT1
Ventral posterior thalamic nucleus parvicellular partipsiVPPC1
Ventromedial thalamic nucleus caudal partipsiVMc1
Central medial intralaminar nucleusipsiCMILN2
Lateral posterior thalamic nucleusipsiLP1
Oval paracentral thalamic nucleusipsiOPC0
Ventral medial nucleus of the thalamusipsiVMT-0.5
Zona incertaipsiZI-0.5
Medial habenular nucleusipsiMHb-2
Pineal glandipsiPi-0.5
Deep pineal glandipsiDPi-2
Pineal stalkipsiPiSt-2
Caudal part of the pineal stalkipsiCPiSt-2
Medial forebrain bundleipsimfb-2
Amygdaloid complexipsiAC1
Basolateral amygdaloid nucleusipsiBL3
Basolateral amygdaloid nucleus ventral partipsiBLve1
Posterior basolateral nucleusipsiBLP1
Anterior basomedial nucleusipsiBMA1
Posterior basomedial nucleusipsiBMP2
Bed nucleus of the stria terminalisipsiBST2
Bed nucleus of the stria terminalis anterior division dorsomedial nucleusipsiBSTdm0.5
Bed nucleus of the stria terminalis interfascicular nucleusipsiBSTif1
Bed nucleus of the stria terminalis transverse nucleusipsiBSTt1
Central amygdaloid nucleusipsiCe1
Globus pallidusipsiGP2
Ventral pallidumipsiVP3
Accumbens nucleusipsiAc3
Accumbens nucleus shellipsiAcbSh3
Caudate putamenipsiCPu2
Medial striatumipsiCPum1
Lateral striatumipsiCPul1
HippocampusipsiHIPP3
Anterodorsal hippocampal formationipsiHIPPad1
Dorsal hippocampusipsiHIPPd1
Dentate gyrusipsiDG1
Field CA1 of hippocampusipsiCA1-3
Field CA3 of hippocampusipsiCA33
Subiculum ventral partipsiSv-3
Fornixipsif-2
Entorhinal cortexipsiEnt2
Medial entorhinal cortexipsiMEnt3
Piriform cortexipsiPir1.5
Glia limitans layeripsigliaLim3
Cingulate cortexipsiCg1.5
Anterior cingulate cortexipsiACC2
Dorsal anterior cingulate cortexipsiDACC-0.5
Cingulumipsicg-2
Caudal cingulumipsiccg-2
Prelimbic cortexipsiPrL1
Infralimbic cortexipsiIL-0.5
Frontal association cortexipsiFrA3
Frontal cortex area 1ipsiFr13
Frontal cortex area 2ipsiFr23
Temporal cortexipsiTE2
Agranular insular cortexipsiAI1.5
Somatomotoric regionsipsiSMR1
Motoric regionsipsiM1
Hindlimb motor cortexipsiHMCx1
Medial prefrontal cortexipsimPFC2
Medial agranular prefrontal cortexipsiAGm-0.5
Visual regionsipsiVR2
Primary visual cortexipsiV11
Secondary visual cortex medial areaipsiV2M1
Secondary visual cortex lateral areaipsiV2L1
Anterior medial frontal cortexipsiAMFC0
Medial orbital cortexipsiMO0.5
Posterior commissureipsipc-2
Dorsal geniculate nucleus lateral partipsiDLGl1
Lateral geniculate complexipsiLG0
Ventral lateral geniculate nucleusipsiVLG1
Interpeduncular nucleusipsiIP3
Interpeduncular nucleus caudal subnucleusipsiIPC1
Interpeduncular nucleus dorsal subnucleusipsiIPRd1
Interpeduncular nucleus dorsolateral partipsiIPRdL1
Interpeduncular nucleus lateral subnucleusipsiIPL1
Interpeduncular nucleus rostral subnucleus central partipsiIPRce-0.5
Olfactory bulb A16ipsiMOB-0.5
Glomerular layer of the olfactory bulbipsiOBglo1
Olfactory tubercle polymorph layeripsiTuOpo0.5
Anterior septal regionipsiASER3
Lateral septal nucleusipsiLS3
Lateral septal nucleus rostral partipsiLSr2
Lateral septal nucleus ventrolateral partipsiLSvl2
Triangular septal nucleusipsiTS2
Septohypothalamic nucleusipsiSHy2
Stria terminalisipsist-2
3d ventricleipsi3V3
Supraependymal terminals of 3d ventricleipsiset3V3
Subependymal terminals under the ependyma of the 3d ventricleipsisete3V3
Ependyma of rostral 3d ventricleipsi3VRe-0.5
4th ventricleipsi4V3
Floor of the 4th ventricleipsiF4V-0.5
AqueductipsiAq3
Around aqueductipsiaAq-0.5
Lateral ventricle ependymal wallipsiLVew-0.5
Sympathetic preganglionic cell column T1ipsiSpIMLT1-0.5
Sympathetic preganglionic cell column T2ipsiSpIMLT2-0.5
Sympathetic preganglionic cell column T3ipsiSpIMLT3-0.5
Central graycontraCG2.5
Central gray pons partcontraCGP2
Superior colliculuscontraSC0.5
Laterodorsal tegmental nucleuscontraLDTg2
Dorsolateral part of the brachium conjunctivumcontrasucepDL0
Locus coeruleuscontraLC2
Nucleus incertus pars compactacontraNIc1
Nucleus incertus pars dissipatacontraNId1
Pontine reticular nucleuscontraPRN2
Gigantocellular reticular nucleuscontraGi-0.5
Parvicellular reticular nucleuscontraPCRt0.5
Dorsal raphe nucleus lateral wingcontraDRlw1
Pontine raphe nucleuscontraPnR2
Raphe magnus nucleuscontraRMg2
Rostral ventrolateral medullacontraRVLM2
Diagonal band of BrocacontraDBB3
DiencephaloncontraDEC3
Anterior hypothalamic areacontraAHA2.5
Posterior hypothalamic nucleus rostral partcontraPHRo2.5
Paraventricular hypothalamic nucleuscontraPa0.5
Suprachiasmatic nucleuscontraSCh2.5
Reuniens thalamic nucleuscontraRe3
Lateral posterior thalamic nucleuscontraLP0.5
Medial forebrain bundlecontramfb-2
Medial striatumcontraCPum0.5
Lateral striatumcontraCPul0.5
Fornixcontraf-2
Cingulate cortexcontraCg0.5
Cingulumcontracg-2
Caudal cingulumcontraccg-2
Prelimbic cortexcontraPrL0.5
Primary visual cortexcontraV10.5
Secondary visual cortex medial areacontraV2M0.5
Secondary visual cortex lateral areacontraV2L0.5
Medial orbital cortexcontraMO0.5
Dorsal geniculate nucleus lateral partcontraDLGl0.5
Ventral lateral geniculate nucleuscontraVLG0.5
Interpeduncular nucleuscontraIP3
Interpeduncular nucleus caudal subnucleuscontraIPC1
Interpeduncular nucleus dorsal subnucleuscontraIPRd1
Interpeduncular nucleus dorsolateral partcontraIPRdL1
Interpeduncular nucleus lateral subnucleuscontraIPL1
Olfactory bulb A16contraMOB-0.5
Anterior septal regioncontraASER3
Lateral septal nucleuscontraLS3
Stria terminaliscontrast-2

Input from

NameSideAbbr.WeightDetails
Lateral periaqueductal grayipsiLPAG1
Rostromedial tegmental nucleusipsiRMTg0.5
Locus coeruleusipsiLC-0.5
Locus coeruleus caudal partipsiLCca-0.5
Locus coeruleus rostral partipsiLCRo-0.5
Dorsal raphe nucleus rostral partipsiDRr-0.5
Endopiriform systemipsiEnN0.5
Nucleus of the horizontal limb of the diagonal bandipsiHDB1
Nucleus of the vertical limb of the diagonal bandipsiVDB0.5
Medial septal nucleusipsiMS1
Substantia innominataipsiSI2
Medial tuberal nucleusipsiMTuN2
Magnocellular preoptic nucleusipsiMCPO1.5
Median preoptic nucleusipsiMnPO1
Tenia tectaipsiTT0.5
Tuberomammillary nucleusipsiTuM0.5
Tuberomammillary nucleus dorsomedial partipsiTBMdm0.5
Tuberomammillary nucleus ventrolateral partipsiTBMvl0.5
Ventral tuberomammillary nucleusipsiVTM0.5
Caudal tuberomammillary nucleusipsiTuMC0.5
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area perifornical partipsiPFx0
Peduncular part of lateral hypothalamusipsiPLH-0.5
Lateroanterior hypothalamic nucleusipsiLAH0.5
Anterior hypothalamic area central partipsiAHAC1
Anterior hypothalamic nucleusipsiAHn1.5
Dorsal hypothalamic areaipsiDA2
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Posterior hypothalamic areaipsiPHA3
Ventromedial hypothalamic nucleusipsiVMH0.5
Perifornical nucleusipsiPeF2
Subincertal nucleusipsiSubI2
Midline group of the dorsal thalamusipsiMTN2
Paraventricular thalamic nucleus posterior partipsiPVP1
Zona incertaipsiZI2
Zona incerta rostral partipsiZIR-0.5
Tuber cinereum areaipsiTC1.5
Lateral habenular nucleus central partipsiLHbc2
Lateral habenular nucleus lateral partipsiLHbL1.5
Lateral habenular nucleus lateral part magnocellular subnucleusipsiLHbLMc1.5
Lateral habenular nucleus medial partipsiLHbM2.5
Lateral habenular nucleus medial part marginal subnucleusipsiLHbMMg2
Central subnucleus of the medial part of the lateral habenular nucleusipsiLHbMCe2
RetinaipsiRET-0.5
Bed nucleus of the stria terminalis anterior lateral areaipsiBSTAL0.5
Bed nucleus of the stria terminalis lateral division posterior partipsiBSTLP1.5
Bed nucleus of the stria terminalis medial division anterior partipsiBSTMA0.5
Bed nucleus of the stria terminalis medial division posterior partipsiBSTMP1.5
Bed nucleus of the stria terminalis posterior division ventral nucleusipsiBSTV1.5
Central amygdaloid nucleusipsiCe1.5
Anterior amygdaloid areaipsiAA0.5
Medial amygdaloid nucleusipsiMe1.5
ClaustrumipsiCl2
Ventral pallidumipsiVP2
Accumbens nucleusipsiAc0.5
Accumbens nucleus shellipsiAcbSh0.5
Fundus of the striatumipsiFS1.5
Cingulate cortex area 1ipsiCg11
Cingulate cortex area 1 caudal partipsiCg1c1
Cingulate cortex area 2ipsiCg21
Cingulate cortex area 2 caudal partipsiCg2c1
Dorsal anterior cingulate cortexipsiDACC1
Prelimbic cortexipsiPrL-0.5
Prelimbic cortex dorsal partipsiPrLd2
Prelimbic cortex deep layersipsiPrLDL3
Prelimbic cortex ventral partipsiPrLv3
Infralimbic cortexipsiIL3
Infralimbic cortex deep layersipsiILDL3
Frontal association cortexipsiFrA1
Frontal polar cortex medial partipsiFPm3
Agranular insular cortex dorsal partipsiAID1
Agranular insular cortex ventral partipsiAIV0
Dorsal peduncular cortexipsiDP1.5
Prefrontal cortexipsiPFC-0.5
Medial agranular prefrontal cortexipsiAGm0
Dorsolateral orbital cortexipsiDLO1
Lateral orbital cortexipsiLO0
Lateral orbital cortex rostral partipsiLOr1
Medial orbital cortexipsiMO1.5
Ventral orbital cortexipsiVO1.5
Ventrolateral orbital areaipsiVLO0
Interpeduncular nucleus caudal subnucleusipsiIPC2
Interpeduncular nucleus dorsal subnucleus magnocellular partipsiIPRm2
Interpeduncular nucleus dorsal subnucleus parvocellular partipsiIPRdp2
Interpeduncular nucleus intermediate subnucleusipsiIPI1
Interpeduncular nucleus lateral subnucleusipsiIPL2
Interpeduncular nucleus medial partipsiIPM2
Interpeduncular nucleus paramedian partipsiIPPM2
Interpeduncular nucleus rostral subnucleusipsiIPR1
Interpeduncular nucleus rostral subnucleus central partipsiIPRce3
Lateral septal nucleusipsiLS1.5
Septohypothalamic nucleusipsiSHy1
Lateral habenular nucleus lateral partcontraLHbL0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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