University of Rostock

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Rat connectome



Field CA3 of hippocampus layer stratum oriens left


Abbreviation
CA3or
Color       
Superior regionsField CA3 of hippocampus layers

SynonymsAbbr.Language
Field CA3 of hippocampus layer stratum oriensCA3or 
Field CA3 of hippocampus layer stratum oriensCA3L2so 
Field CA3 stratum oriensCA3soEng

SubregionsSide
Field CA3 of hippocampus layer deep part of the stratum oriensleft
Field CA3 of hippocampus layer stratum oriens adjacent to the extraventricular part of the mossy fiber layerleft
Field CA3 of hippocampus layer stratum oriens temporal partleft
Field CA3 of hippocampus layer stratum oriens non-pyramidal cellsleft
Field CA3 of hippocampus layer stratum oriens aspiny interneuronsleft
Field CA3 of hippocampus layer stratum oriens at septal levelsleft

Output to

NameSideAbbr.WeightDetails
Magnocellular basal forebrain neuronal complexipsiMBFNC-0.5
Diagonal band of BrocaipsiDBB0.5
Medial septal nucleusipsiMS1
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0.5
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0.5
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0
Accumbens nucleus shellipsiAcbSh1
Field CA1 of hippocampus layer stratum pyramidale double projections cellsipsiCA1L3spdpc-0.5
Field CA3 of hippocampus layer stratum radiatumipsiCA3rad-0.5
Field CA3 of hippocampus layer stratum pyramidale pyramidal cells near the stratum lucidumipsiCA3L3spPCL-0.5
SubiculumipsiS-0.5
Subiculum dorsal partipsiSd0
Ventral hippocampusipsiHIPPv-0.5
Lateral septal nucleusipsiLS2
Medial septal nucleuscontraMS-0.5
Dorsal hippocampuscontraHIPPd-0.5
Lateral septal nucleuscontraLS-0.5

Input from

NameSideAbbr.WeightDetails
Ventral tegmental area A10ipsiVTA1
Midline reticular formationipsiMiRF-0.5
Raphe nucleiipsiRAN2
Median raphe nucleusipsiMnR4
Magnocellular basal forebrain neuronal complexipsiMBFNC-0.5
Medial septum dorsal band complexipsiMSDB3
Diagonal band of BrocaipsiDBB1
Nucleus of the horizontal limb of the diagonal bandipsiHDB-0.5
Nucleus of the vertical limb of the diagonal bandipsiVDB3
Medial septal nucleusipsiMS3
Medial septal nucleus medial partipsiMSm-0.5
Medial septum dorsal band complex type 1 axon cellsipsiMSDBt1ac3
Substantia innominataipsiSI-0.5
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0
Basal nucleusipsiBnc3
Basal nucleus parvicellular partipsiBpc3
Basal nucleus parvicellular part caudomedial regionipsiBpccm3
Posterior basolateral nucleusipsiBLP3
Posterior basomedial nucleusipsiBMP2
Ventromedial part of the lateral nucleusipsiLaVM3
Amygdalopiriform transition area medial partipsiAPirM1
Dorsal hippocampusipsiHIPPd-0.5
Polymorph layer of the dentate gyrusipsiDGpo-0.5
Hilar mossy cellsipsiHilmc-0.5
Field CA1 of hippocampus layer stratum pyramidale double projections cellsipsiCA1L3spdpc-0.5
Field CA2 of hippocampusipsiCA2-0.5
Field CA2 of hippocampus layer stratum pyramidale secondary axon of pyramidal cellsipsiCA2L3sapy-0.5
Field CA2 of hippocampus ventral partipsiCA2V1
Field CA3 of hippocampusipsiCA30.5
Distal field CA3 of hippocampusipsiDCA3-0.5
Field CA3 of hippocampus layer stratum radiatumipsiCA3rad-0.5
Field CA3 of hippocampus layer stratum lucidum spiny neuronsipsiCA3L4slsp1
Field CA3 of hippocampus layer stratum pyramidaleipsiCA3pyr-0.5
Field CA3 of hippocampus layer stratum pyramidale pyramidal neuronsipsiCA3L3spy4
Field CA3 of hippocampus granule cellsipsiCA3Lgc-0.5
Field CA3 of hippocampus mid portionipsiCA3mi-0.5
Field CA3 of hippocampus mid septotemporal portionipsiCA3mst3
Field CA3a of hippocampus pyramidal cell layer secondary axon of pyramidal cellsipsiCA3aLsapyc-0.5
Proximal field CA3 of hippocampusipsiPCA33
Septal regionipsiSER3
Ventral tegmental area A10contraVTA0.5
HippocampuscontraHIPP3
Field CA2 of hippocampus layer stratum pyramidalecontraCA2pyr-0.5
Field CA3 of hippocampuscontraCA30.5
Lateral part of hippocampuscontraHIPPRL3

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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