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Rat connectome



Basal nucleus left


Abbreviation
Bnc
Color       
Superior regionsLaterobasal nuclear complex

SynonymsAbbr.Language
Basal amygdaloid cortex  
Basal amygdaloid nucleus  
Basal amygdaloid complexBnc 
Caudal part of amygdala Eng
Caudal amygdala Eng
Caudal nucleus of the amygdala Eng
Basal amygdala Eng
Basal nucleusBncEng
Basal nucleusBEng

SubregionsSide
Accessory basal nucleusleft
Basal dorsal nucleusleft
Basal nucleus anterior subdivisionleft
Basal nucleus intermediate divisionleft
Basal nucleus lateral partleft
Basal nucleus magnocellular partleft
Basal nucleus medial partleft
Basal nucleus parvicellular partleft
Basal nucleus posterior partleft
Basal nucleus rostral partleft
Basal nucleus ventral divisonleft
Basal nucleus ventrolateral partleft
Basolateral amygdaloid nucleusleft
Basomedial amygdaloid nucleusleft
Caudal basal amygdaloid nucleusleft
Caudal portion of the magnocellular basal nucleusleft
Superficial division of the basal nucleusleft
Transition zone of basolateral nucleus and central amygdaloid nucleusleft
Border of basolateral and posterior basomedial amygdaloid nucleusleft

Output to

NameSideAbbr.WeightDetails
Tegmental areaipsiTGA1
Ventral tegmental area A10ipsiVTA-0.5
Reticular systemipsiRF-1
Parabrachial nucleus medialipsiPBnMe-1
Caudal endopiriform regionipsiCEn-0.5
Central endopiriform systemipsiCEnN-0.5
Rostral endopiriform regionipsiREn-0.5
Nucleus of the horizontal limb of the diagonal bandipsiHDB1
Nucleus of the vertical limb of the diagonal bandipsiVDB1
Substantia innominataipsiSI3
Lateral hypothalamic areaipsiLH2
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Ventromedial hypothalamic nucleusipsiVMH2
Paraventricular hypothalamic nucleusipsiPa-0.5
Suprachiasmatic nucleusipsiSCh-0.5
Supraoptic nucleus [Supraoptic region]ipsiSO-0.5
ThalamusipsiT2.5
Mediodorsal thalamic nucleusipsiMD2
Mediodorsal thalamic nucleus central partipsiMDC1
Mediodorsal thalamic nucleus medial partipsiMDM1
Ventromedial thalamic nucleus caudal partipsiVMc0.5
Ventromedial thalamic nucleus caudal two thirdsipsiVMctt0.5
Basal nucleusipsiBnc2
Accessory basal nucleusipsiAB1
Accessory basal nucleus magnocellular divisionipsiABm-3
Accessory basal nucleus parvicellular divisionipsiABp-3
Basal nucleus intermediate divisionipsiBnci-3
Basal nucleus magnocellular partipsiBmc-3
Basal nucleus parvicellular partipsiBpc-3
Lateral amygdaloid nucleusipsiLA2
Dorsolateral part of the lateral nucleusipsiLaDL-3
Lateral nucleus medial partipsiLAM1
Ventrolateral part of the lateral nucleusipsiLaVL1
Bed nucleus of the stria terminalisipsiBST3
Central amygdaloid nucleusipsiCe3
Central amygdaloid nucleus intermediate divisionipsiCeI-3
Central amygdaloid nucleus lateral divisionipsiCeL-3
Central amygdaloid nucleus lateral division capsular partipsiCeC-3
Central amygdaloid nucleus medial divisionipsiCeM-1
Anterior amygdaloid areaipsiAA2
Anterior cortical amygdaloid nucleusipsiACo2.5
Posterior amygdaloid nucleusipsiCOAp1
Nucleus of the lateral olfactory tractipsiLOT2
Periamygdaloid complexipsiPAC1
Periamygdaloid complex medial divisionipsiPACm1
Periamygdaloid complex sulcal divisionipsiPACs1
Medial amygdaloid nucleusipsiMe1
Medial amygdaloid nucleus caudal partipsiMeC-3
Medial amygdaloid nucleus central dorsal partipsiMeCD-3
Medial amygdaloid nucleus central ventral partipsiMeCV-3
Medial amygdaloid nucleus rostral partipsiMeRo-3
Amygdalohippocampal areaipsiAHi2
Amygdalohippocampal area lateral partipsiAHilp-3
Amygdalohippocampal area medial partipsiAHimp-3
Bed nucleus of the accessory olfactory tractipsiBAOT0
Amygdalostriatal transition areaipsiAStr2
Intercalated nuclei of the amygdalaipsiI1
ClaustrumipsiCl3
Globus pallidusipsiGP2
Medial globus pallidusipsiMGP2
Peripallidal regionipsiPePa1
Subpallidal regionipsiSuPa1
Accumbens nucleusipsiAc3
Accumbens nucleus coreipsiAcbC3
Lateral coreipsiAcbCl-0.5
Accumbens nucleus shellipsiAcbSh3
Lateral accumbens shellipsiAcbShl-0.5
Medial accumbensipsiAcbM-1
Caudate putamenipsiCPu3
Ventral striatumipsiCPuv-0.5
HippocampusipsiHIPP2
Field CA1 of hippocampusipsiCA13
Portion of CA1 located adjacent to the ventral subiculumipsiCA1sv-0.5
Field CA3 of hippocampusipsiCA33
Field CA3 of hippocampus layer stratum radiatumipsiCA3rad3
Field CA3 of hippocampus layer stratum oriensipsiCA3or3
SubiculumipsiS3
ParasubiculumipsiPaS3
Entorhinal cortexipsiEnt4
Entorhinal cortex layer 3ipsiEntL31
Entorhinal cortex layer 2ipsiEntL21
Dorsolateral entorhinal cortexipsiDLEnt2
Ventromedial entorhinal cortexipsiVMEA-0.5
Piriform cortexipsiPir2
Retrosplenial regionsipsiRS-1
Cingulate cortexipsiCg-1
Anterior cingulate cortexipsiACC1
Dorsal anterior cingulate cortexipsiDACC2
Prelimbic cortexipsiPrL2
Infralimbic cortexipsiIL3
Infralimbic cortex layer 2ipsiILL2-0.5
Infralimbic cortex layer 3ipsiILL3-0.5
Frontal cortex area 2ipsiFr22
Agranular insular cortex dorsal partipsiAID2
Agranular insular cortex posterior partipsiAIP3
Agranular insular cortex ventral partipsiAIV2
Perirhinal cortexipsiA351
Perirhinal cortex dorsal portionipsiPRhd2
Perirhinal cortex rostral partipsiPRro2
Perirhinal cortex ventral portionipsiPRhv2
Ectorhinal cortexipsiA361
Prefrontal cortexipsiPFC2.5
Medial prefrontal cortexipsimPFC1.5
Visual regionsipsiVR-1
Anterior medial frontal cortexipsiAMFC1
Lateral orbital cortexipsiLO2
Anterior olfactory nucleusipsiAON-1
Olfactory tubercleipsiTuO3
Septal regionipsiSER2
Lateral septal nucleusipsiLS2
Tegmental areacontraTGA-0.5
Basal nucleuscontraBnc-0.5
Basolateral amygdaloid nucleuscontraBL-0.5
Central amygdaloid nucleuscontraCe-0.5
Anterior amygdaloid areacontraAA-0.5
Nucleus of the lateral olfactory tractcontraLOT-0.5
Entorhinal cortexcontraEnt0
Septal regioncontraSER0

Input from

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG2
Substantia nigra A9ipsiSN2
Substantia nigra medial partipsiSNM2
Ventral tegmental area A10ipsiVTA2
Ventral tegmental area A10 dorsal partipsiVTAd2
Caudal linear nucleus of the rapheipsiCLi2
Peripeduncular nucleusipsiPP2
Pedunculopontine tegmental nucleusipsiPPTg2
Locus coeruleusipsiLC2
Parabrachial nucleusipsiPB2
Subcoeruleus nucleusipsiSubC2
Dorsal raphe nucleusipsiDR-0.5
Superior central raphe nucleusipsiCS2
Nucleus of the horizontal limb of the diagonal bandipsiHDB2
Nucleus of the vertical limb of the diagonal bandipsiVDB1
Preoptic regionipsiPREO2
Lateral hypothalamic areaipsiLH2
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Ventromedial hypothalamic nucleusipsiVMH2
Arcuate nucleusipsiArc2
Nucleus paraventricularis [Periventricular zone anterior region]ipsiPaPAR3
Suprachiasmatic nucleusipsiSCh2.5
Premammillary nucleusipsiPMAN2
Supramammillar nucleusipsiSuM2
Interoanteromedial thalamic nucleusipsiIAM2
Central medial thalamic nucleusipsiCM2
Central medial thalamic nucleus caudal partipsiCMca-0.5
Gelatinosus thalamic nucleusipsiG-1
Paracentral thalamic nucleusipsiPC-1
Parafascicular thalamic nucleusipsiPF2
Rhomboid thalamic nucleusipsiRh1
Mediodorsal thalamic nucleusipsiMD2
Mediodorsal thalamic nucleus ventral partipsiMDTV-0.5
Midline group of the dorsal thalamusipsiMTN2.5
Paratenial thalamic nucleusipsiPT2
Paratenial thalamic nucleus dorsomedial portionipsiPTdm-1
Paraventricular thalamic nucleusipsiPV2.5
Paraventricular thalamic nucleus anterior partipsiPVA-1
Paraventricular thalamic nucleus anterior part dorsal portionipsiPVAd-1
Paraventricular thalamic nucleus caudal partipsiPVca3
Paraventricular thalamic nucleus posterior partipsiPVP-1
Reuniens thalamic nucleusipsiRe2
Nucleus reuniens median partipsiREm2
Reuniens thalamic nucleus dorsocaudal partipsiRedc-0.5
Ventral posteromedial thalamic nucleusipsiVPM-1
Subparafascicular thalamic nucleusipsiSPF2
Basal nucleusipsiBnc2
Accessory basal nucleusipsiAB1
Accessory basal nucleus magnocellular divisionipsiABm-3
Accessory basal nucleus parvicellular divisionipsiABp-3
Basal nucleus intermediate divisionipsiBnci-3
Basal nucleus magnocellular partipsiBmc-3
Basal nucleus parvicellular partipsiBpc-3
Lateral amygdaloid nucleusipsiLA2
Dorsolateral part of the lateral nucleusipsiLaDL-3
Lateral nucleus caudal partipsiLAcap1
Lateral nucleus medial partipsiLAM-3
Lateral nucleus midrostrocaudal partipsiLAmr0.5
Lateral nucleus rostral partipsiLAR1
Ventrolateral part of the lateral nucleusipsiLaVL-3
Bed nucleus of the stria terminalisipsiBST2
Bed nucleus of the stria terminalis intraamygdaloid divisionipsiBSTIA1
Central amygdaloid nucleusipsiCe1
Central amygdaloid nucleus intermediate divisionipsiCeI-3
Central amygdaloid nucleus lateral divisionipsiCeL-3
Central amygdaloid nucleus lateral division capsular partipsiCeC-3
Central amygdaloid nucleus medial divisionipsiCeM-3
Amygdalopiriform transition area medial part caudal aspectipsiAPirMc1
Amygdalopiriform transition area medial part rostral aspectipsiAPirMr-0.5
Anterior amygdaloid areaipsiAA-3
Anterior cortical amygdaloid nucleusipsiACo2
Posterior amygdaloid nucleusipsiCOAp0
Nucleus of the lateral olfactory tractipsiLOT2
Periamygdaloid complexipsiPAC1
Periamygdaloid complex medial divisionipsiPACm-3
Periamygdaloid complex sulcal divisionipsiPACs-3
Medial amygdaloid nucleusipsiMe1
Medial amygdaloid nucleus caudal partipsiMeC0
Medial amygdaloid nucleus central dorsal partipsiMeCD-3
Medial amygdaloid nucleus central ventral partipsiMeCV-3
Medial amygdaloid nucleus rostral partipsiMeRo-3
Amygdalohippocampal areaipsiAHi1
Amygdalohippocampal area lateral partipsiAHilp-3
Amygdalohippocampal area medial partipsiAHimp-3
Bed nucleus of the accessory olfactory tractipsiBAOT-3
Intercalated nuclei of the amygdalaipsiI-3
Globus pallidusipsiGP2
Peripallidal regionipsiPePa1
Subpallidal regionipsiSuPa1
Field CA1 of hippocampusipsiCA13
Field CA1 of hippocampus layersipsiCA1L3
Field CA1 of hippocampus temporal partipsiCA1t2.5
Field CA1 of hippocampus ventral partipsiCA1v3
SubiculumipsiS2
Subiculum ventral partipsiSv3
Subiculum ventral part medial partipsiSvm0.5
Parietal rhinal cortexipsiPaRH3
Ventral hippocampusipsiHIPPv-0.5
Entorhinal cortexipsiEnt3
Dorsolateral entorhinal cortexipsiDLEnt3
Dorsal intermediate entorhinal cortexipsiDIEnt-0.5
Lateral entorhinal cortexipsiLEnt-0.5
Lateral entorhinal cortex ventromedial partipsiVMEAL2
Ventral intermediate entorhinal cortexipsiVIEnt-0.5
Ventrolateral entorhinal cortexipsiVLENT3
Ventrolateral entorhinal cortex layersipsiVLENTL3
Piriform cortexipsiPir2
Cingulate cortex area 1 caudal partipsiCg1c1
Cingulate cortex area 2 caudal partipsiCg2c1
Dorsal anterior cingulate cortexipsiDACC2
Prelimbic cortexipsiPrL3
Prelimbic cortex dorsal partipsiPrLd1.5
Prelimbic cortex ventral partipsiPrLv1
Infralimbic cortexipsiIL2
Frontal cortex area 2ipsiFr22
Parietal cortex ventral areaipsiParV2
Temporal association area 2ipsiTe22
Temporal association area 2 dorsal partipsiTe2D2
Temporal association area 3ipsiTe32
Temporal association area 3 ventrocaudal portionipsiTe3vc1
Agranular insular cortexipsiAI2.5
Agranular insular cortex dorsal partipsiAID3
Agranular insular cortex posterior partipsiAIP3
Agranular insular cortex ventral partipsiAIV2
Dysgranular insular cortexipsiDI2.5
Gustatory dysgranular insular cortexipsiDIg3
Visceral dysgranular insular cortexipsiDIv3
Perirhinal cortexipsiA353
Fundus of the perirhinal cortex xipsiFPRh3
Perirhinal cortex anterior portion layer 6ipsiPRhaL62.5
Perirhinal cortex dorsal portionipsiPRhd2
Perirhinal cortex ventral portionipsiPRhv3
Dorsal peduncular cortexipsiDP1
Prefrontal cortexipsiPFC-1
Secondary somatosensory cortexipsiS22
Medial orbital cortexipsiMO1
Medial geniculate nucleusipsiMG1
Anterior olfactory nucleusipsiAON-1
Suprachiasmatic nucleuscontraSCh1.5
Midline group of the dorsal thalamuscontraMTN1.5
Basal nucleuscontraBnc-0.5
Infralimbic cortexcontraIL0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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