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Rat connectome

Subiculum dorsal part left

Abbreviation	Sd
Color
Superior regions	Subiculum

Synonyms	Abbr.	Language
Subiculum dorsal part	Sd	Eng
Dorsal subiculum	DS
Dorsal subicular cortex	DS	Eng

Subregions	Side
Dorsal subiculum anterior part	left
Septal dorsal subiculum	left
Subiculum dorsal distal part	left
Subiculum dorsal half	left
Subiculum dorsal part layers	left
Subiculum dorsal posterior part	left
Subiculum dorsal proximal part	left
Subiculum dorsomedial part	left
Caudal part of the dorsal subiculum	left
Rostral part of the dorsal subiculum dorsal part	left
Dorsal subiculum medial part	left
Dorsal subiculum lateral part	left
Subiculum dorsal part rostrocaudal extent	left
Subiculum dorsal part neuron populations	left
Dorsal subiculum rostral part	left

Output to

Name	Side	Abbr.	Weight
Central gray mesencephalic part	ipsi	CGM	-0.5
Paralemniscal nucleus	ipsi	PL	3
Dorsal fornix	ipsi	df	-2
Dorsal endopiriform nucleus	ipsi	DEn	0
Ventral endopiriform nucleus	ipsi	VEn	0
Dorsal tenia tecta	ipsi	DTT	1
Ventral tenia tecta	ipsi	VTT	1
Lateral hypothalamic area	ipsi	LH	1
Anterior hypothalamic area	ipsi	AHA	2.5
Anteroventral periventricular nucleus [Anterior hypothalamic area]	ipsi	AVPe	1
Anterior hypothalamic nucleus dorsomedial part	ipsi	AHndm	1
Anterior hypothalamic nucleus medial tip	ipsi	AHnmt	0
Posterior hypothalamic area dorsal part	ipsi	PHD	-0.5
Subparaventricular zone ventral part	ipsi	SuPZv	0
Subparaventricular zone dorsal one third	ipsi	SuPZot	1
Ventromedial hypothalamic nucleus	ipsi	VMH	1
Paraventricular hypothalamic nucleus	ipsi	Pa	0.5
Mammillary body	ipsi	CMAM	2
Lateral mammillary nucleus	ipsi	LM	1
Lateral mammillary nucleus dorsal part	ipsi	LMd	-0.5
Lateral mammillary nucleus ventral part	ipsi	LMv	-0.5
Mammillary body caudomedial part	ipsi	CMAMcm	-0.5
Mammillary body dorsolateral part	ipsi	CMAMdL	-0.5
Mammillary body dorsomedial part	ipsi	CMAMdm	-0.5
Medial mammillary nucleus dorsal part	ipsi	MMnd	-0.5
Mammillary body medial nuclei pars medialis dorsal division	ipsi	MBMMd	-0.5
Medial mammillary nucleus median part	ipsi	MMnm	-0.5
Medial mammillary nucleus posterior part	ipsi	MMNp	-1
Dorsal portion of the posterior part of the medial mammillary nucleus	ipsi	MMNdp	-0.5
Medial mammillary nucleus ventral part	ipsi	MMV	-0.5
Supramammillar nucleus	ipsi	SuM	3
Retrochiasmatic area	ipsi	RCh	1.5
Anterior group of the dorsal thalamus	ipsi	ATN	2
Anterodorsal thalamic nucleus	ipsi	AD	3
Anteromedial thalamic nucleus	ipsi	AM	3
Anteroventral thalamic nucleus	ipsi	AV	3
Interoanteromedial thalamic nucleus	ipsi	IAM	2
Paratenial thalamic nucleus	ipsi	PT	-0.5
Paraventricular thalamic nucleus	ipsi	PV	2
Reuniens thalamic nucleus	ipsi	Re	-0.5
Reuniens thalamic nucleus caudomedial division	ipsi	Recm	2
Reunienes thalamic nucleus rostromedial division	ipsi	Rerm	3
Reuniens thalamic nucleus rostrolateral division	ipsi	Rerl	2
Laterodorsal thalamic nucleus	ipsi	LD	3
Stria medullaris of the thalamus	ipsi	sm	-2
Basolateral amygdaloid nucleus	ipsi	BL	1
Anterior basolateral nucleus	ipsi	BLA	1
Posterior basolateral nucleus	ipsi	BLP	1
Ventral basolateral nucleus	ipsi	BLV	2
Anterior basomedial nucleus	ipsi	BMA	0.5
Anterior basomedial nucleus caudal part	ipsi	BMAc	0.5
Posterior basomedial nucleus	ipsi	BMP	0
Posterior basomedial nucleus medial part	ipsi	BMPm	0.5
Lateral amygdaloid nucleus	ipsi	LA	1
Central amygdaloid nucleus midrostrocaudal part medial division dorsal portion	ipsi	Cemrcpmd	1.5
Amygdalopiriform transition area	ipsi	APir	1
Anterior cortical amygdaloid nucleus	ipsi	ACo	0.5
Posterior amygdaloid nucleus	ipsi	COAp	0
Posterolateral cortical nucleus	ipsi	PLCo	0
Nucleus of the lateral olfactory tract	ipsi	LOT	0
Medial amygdaloid nucleus	ipsi	Me	0.5
Amygdalohippocampal area	ipsi	AHi	0.5
Amygdalohippocampal area rostrolateral part	ipsi	AHirl	0.5
Posteromedial cortical nucleus	ipsi	PMCo	0.5
Intercalated nuclei of the amygdala	ipsi	I	0.5
Claustrum	ipsi	Cl	0
Accumbens nucleus	ipsi	Ac	-0.5
Accumbens nucleus anterolateral part	ipsi	AcAL	1
Accumbens nucleus anteromedial part	ipsi	AcAM	3
Accumbens nucleus core	ipsi	AcbC	-0.5
Accumbens nucleus posterior part	ipsi	Acpo	1
Accumbens nucleus posterolateral part	ipsi	Acbpl	2
Rostral pole of the accumbens nucleus	ipsi	AcbRP	2
Accumbens nucleus shell	ipsi	AcbSh	-0.5
Ventrolateral shell	ipsi	AcbShvl	-0.5
Ventromedial shell	ipsi	AcbShvm	-0.5
Accumbens nucleus ventral regions	ipsi	AcV	2
Dorsal accumbens	ipsi	AcbD	0
Lateral nucleus accumbens	ipsi	Acl	1
Medial accumbens	ipsi	AcbM	1
Dentate gyrus	ipsi	DG	1
Field CA1 of hippocampus dorsal	ipsi	CA1d	2
Field CA1 of hippocampus ventral part	ipsi	CA1v	0
Field CA2 of hippocampus	ipsi	CA2	0
Field CA3 of hippocampus	ipsi	CA3	2
Rostral part of the field CA3 of hippocampus	ipsi	CA3R	-0.5
Subiculum ventral part	ipsi	Sv	2
Fornix	ipsi	f	-2
Indusium griseum	ipsi	IG	1
Presubiculum	ipsi	PrS	2
Parasubiculum	ipsi	PaS	0
Postsubiculum	ipsi	Post	3
Entorhinal cortex	ipsi	Ent	3
Entorhinal cortex layer 4	ipsi	EntL4	3
Lateral entorhinal cortex	ipsi	LEnt	2
Lateral entorhinal cortex lateral part	ipsi	LEntLa	2
Lateral entorhinal cortex medial part	ipsi	LEntM	2
Lateral entorhinal cortex intermediate part	ipsi	LEnti	2
Medial entorhinal cortex	ipsi	MEnt	3
Medial entorhinal cortex dorsal part	ipsi	MEntD	0
Medial entorhinal cortex lateral part	ipsi	MEntL	3
Medial entorhinal field medial part	ipsi	MEntFm	0.5
Medial entorhinal cortex intermediate part	ipsi	MEntFim	-0.5
Medial entorhinal field layer 5	ipsi	MEntFL5	-0.5
Piriform cortex	ipsi	Pir	0
Postpiriform transition area	ipsi	TR	1
Retrosplenial regions	ipsi	RS	-1
Retrosplenial dorsal	ipsi	RSd	3
Retrosplenial ventral part	ipsi	RSPv	2.5
Retrosplenial ventral a	ipsi	RSv-a	3
Retrosplenial area ventral part zone b/c	ipsi	RSPv-bc	3
Retrosplenial cortex middle part layer 1	ipsi	RSmiL1	-0.5
Retrosplenial cortex middle part layer 2	ipsi	RSmiL2	-0.5
Retrosplenial cortex middle part layer 3	ipsi	RSmiL3	-0.5
Retrosplenial cortex middle part layer 4	ipsi	RSmiL4	-0.5
Retrosplenial cortex middle part layer 5	ipsi	RSmiL5	-0.5
Retrosplenial cortex middle part layer 6	ipsi	RSmiL6	-0.5
Retrosplenial agranular cortex	ipsi	RSA	0
Retrosplenial granular b cortex layer 3	ipsi	RSGb3	3
Retrosplenial granular b cortex deep layer 2	ipsi	RSGbd2	3
Anterior cingulate cortex	ipsi	ACC	-1
Dorsal anterior cingulate cortex	ipsi	DACC	0.5
Ventral anterior cingulate cortex	ipsi	VACC	0.5
Prelimbic cortex	ipsi	PrL	2
Infralimbic cortex	ipsi	IL	2.5
Infralimbic cortex ventral part	ipsi	ILv	-0.5
Parietal cortex posterior area	ipsi	ParP	0
Temporal cortex	ipsi	TE	1
Auditory regions	ipsi	AU	0
Primary auditory cortex	ipsi	Au1	0
Ventral auditory areas	ipsi	AUDv	0
Agranular insular cortex dorsal part	ipsi	AID	1.5
Agranular insular cortex posterior part	ipsi	AIP	0
Agranular insular cortex ventral part	ipsi	AIV	0
Gustatory dysgranular insular cortex	ipsi	DIg	0
Granular insular cortex	ipsi	GI	0
Perirhinal cortex	ipsi	A35	3
Ectorhinal cortex	ipsi	A36	2.5
Postrhinal cortex	ipsi	POR	2
Motoric regions	ipsi	M	3
Lateral agranular prefrontal cortex	ipsi	AGl	0
Medial agranular prefrontal cortex	ipsi	AGm	0
Primary somatosensory cortex	ipsi	S1	0
Secondary somatosensory cortex	ipsi	S2	0
Primary visual cortex	ipsi	V1	0
Secondary visual cortex lateral area	ipsi	V2L	0
Primary visual cortex binocular area	ipsi	V1B	0
Intermediolateral cortical visual area	ipsi	VISli	0
Laterolateral cortical visual area	ipsi	VISll	0
Mediolateral cortical visual area	ipsi	VISlm	0
Posterolateral cortical visual area	ipsi	VISpl	0
Rostrolateral cortical visual area	ipsi	VISrl	0
Anteromedial cortical visual area	ipsi	VISam	0
Lateral orbital cortex	ipsi	LO	0
Ventral orbital cortex	ipsi	VO	0
Ventrolateral orbital area	ipsi	VLO	2
Commissural fibers	ipsi	cosf	-2
Accessory olfactory bulb	ipsi	AOB	0
Olfactory bulb A16	ipsi	MOB	0
Anterior olfactory nucleus	ipsi	AON	0.5
Anterior olfactory nucleus medial part	ipsi	AONm	-0.5
Lateral septal nucleus dorsal part	ipsi	LSD	0
Lateral septal nucleus dorsomedial quadrant	ipsi	LSdmq	3
Rostral level of the dorsomedial quadrant of the lateral septal nucleus	ipsi	LSrdmq	-0.5
Lateral septal nucleus rostral part	ipsi	LSr	2
Dorsomedial tip of the lateral septal nucleus rostral part medial zone	ipsi	LSrmdmt	-0.5
Paraventricular hypothalamic nucleus	contra	Pa	0
Mammillary body medial nuclei pars medialis dorsal division	contra	MBMMd	-0.5
Medial mammillary nucleus median part	contra	MMnm	-0.5
Dorsal portion of the posterior part of the medial mammillary nucleus	contra	MMNdp	-0.5
Anterodorsal thalamic nucleus	contra	AD	3
Anteromedial thalamic nucleus	contra	AM	3
Anteroventral thalamic nucleus	contra	AV	3
Laterodorsal thalamic nucleus	contra	LD	3

Input from

Name	Side	Abbr.	Weight
Ventral tegmental area A10	ipsi	VTA	-0.5
Parabrachial pigmented nucleus	ipsi	PBP	-0.5
Paranigral nucleus	ipsi	PN	-0.5
Dorsal endopiriform nucleus	ipsi	DEn	0
Nucleus of the horizontal limb of the diagonal band	ipsi	HDB	1
Lateral part of the nucleus of the horizontal limb of the diagonal band	ipsi	LPHDB	3
Nucleus of the horizontal limb of the diagonal band medial part	ipsi	HDBm	3
Nucleus of the vertical limb of the diagonal band	ipsi	VDB	3
Nucleus of the vertical limb of the diagonal band caudal part	ipsi	VDBc	1.5
Nucleus of the vertical limb of the diagonal band lateral part	ipsi	VDBL	1
Nucleus of the vertical limb of the diagonal band rostromedial part	ipsi	VDBrm	2
Nucleus of the diagonal band ventrolateral tip	ipsi	DBBvL	-0.5
Medial septal nucleus	ipsi	MS	1
Medial septal nucleus lateral part	ipsi	MSLa	1
Medial septal nucleus medial part	ipsi	MSm	2
Substantia innominata	ipsi	SI	1
Hypothalamus	ipsi	HYPO	0
Supramammillar nucleus	ipsi	SuM	-0.5
Anterior group of the dorsal thalamus	ipsi	ATN	-0.5
Anteroventral thalamic nucleus	ipsi	AV	3
Most caudal part of the anteroventral thalamic nucleus parvicellular part	ipsi	AVpamC	3
Most dorsal part of the anteroventral thalamic nucleus parvicellular part	ipsi	AVpamD	3
Medial group of the dorsal thalamus	ipsi	MED	1
Mediodorsal thalamic nucleus	ipsi	MD	1
Paratenial thalamic nucleus	ipsi	PT	-0.5
Paraventricular thalamic nucleus caudal part	ipsi	PVca	1
Reuniens thalamic nucleus	ipsi	Re	3
Lateral thalamic nuclear group	ipsi	LTNG	3
Ventral bank of the rhinal fissure rostral part	ipsi	VBrfR	2
Anterior basolateral nucleus	ipsi	BLA	0.5
Posterior basolateral nucleus	ipsi	BLP	2
Anterior basomedial nucleus	ipsi	BMA	0
Posterior basomedial nucleus	ipsi	BMP	0
Lateral amygdaloid nucleus	ipsi	LA	1
Ventromedial part of the lateral nucleus	ipsi	LaVM	1
Anterior cortical amygdaloid nucleus	ipsi	ACo	0
Posterior amygdaloid nucleus	ipsi	COAp	0
Posterolateral cortical nucleus	ipsi	PLCo	0
Posteromedial cortical nucleus	ipsi	PMCo	0
Claustrum	ipsi	Cl	0
Medial accumbens	ipsi	AcbM	-0.5
Bed nucleus of the anterior commissure	ipsi	BAC	0
Anterior hippocampal formation	ipsi	AHCf	-0.5
Dentate gyrus	ipsi	DG	1.5
Hilus of the dentate gyrus	ipsi	Hil	1
Field CA1 of hippocampus	ipsi	CA1	3
Field CA1 of hippocampus dorsal	ipsi	CA1d	4
Field CA1 of hippocampus stratum lacunosum-moleculare	ipsi	CA1LM	-0.5
Field CA1 of hippocampus layer stratum radiatum	ipsi	CA1rad	-0.5
Field CA1 of hippocampus layer inner stratum radiatum	ipsi	CA1L5isr	-0.5
Field CA1 of hippocampus layer stratum pyramidal cells	ipsi	CA1L3spc	3
Field CA1 of hippocampus layer stratum oriens	ipsi	CA1or	-0.5
Field CA1 of hippocampus mid-level layer stratum radiatum	ipsi	CA1miL5sr	-0.5
Field CA1 of hippocampus ventral part	ipsi	CA1v	0
Field CA2 of hippocampus	ipsi	CA2	3
Field CA3 of hippocampus	ipsi	CA3	2
Field CA3 of hippocampus stratum lacunosum-moleculare	ipsi	CA3lm	1
Field CA3 of hippocampus layer stratum radiatum	ipsi	CA3rad	1
Field CA3 of hippocampus layer stratum lucidum	ipsi	CA3sl	0
Field CA3 of hippocampus layer stratum pyramidale	ipsi	CA3pyr	0
Field CA3 of hippocampus layer stratum oriens	ipsi	CA3or	0
Septal part of the field CA3 of hippocampus	ipsi	SCA3	-0.5
Field CA4 of hippocampus	ipsi	CA4	1
Subiculum ventral part	ipsi	Sv	0
Indusium griseum	ipsi	IG	0
Presubiculum	ipsi	PrS	0
Postsubiculum	ipsi	Post	-0.5
Lateral entorhinal cortex	ipsi	LEnt	2
Lateral entorhinal cortex lateral part	ipsi	LEntLa	3
Lateral entorhinal cortex medial part	ipsi	LEntM	0.5
Lateral entorhinal cortex intermediate part	ipsi	LEnti	1
Medial entorhinal cortex	ipsi	MEnt	3
Medial entorhinal cortex dorsal part	ipsi	MEntD	3
Medial entorhinal cortex lateral part	ipsi	MEntL	3
Medial entorhinal cortex superficial layers	ipsi	MEntLyS	3
Medial entorhinal field medial part	ipsi	MEntFm	0
Piriform cortex	ipsi	Pir	0
Postpiriform transition area	ipsi	TR	1
Retrosplenial regions	ipsi	RS	-1
Retrosplenial dorsal	ipsi	RSd	0
Retrosplenial ventral a	ipsi	RSv-a	4
Retrosplenial agranular cortex	ipsi	RSA	1
Dorsal anterior cingulate cortex	ipsi	DACC	0
Ventral anterior cingulate cortex	ipsi	VACC	0
Prelimbic cortex	ipsi	PrL	0
Infralimbic cortex	ipsi	IL	0
Temporal cortex	ipsi	TE	0
Auditory regions	ipsi	AU	0
Primary auditory cortex	ipsi	Au1	1
Ventral auditory areas	ipsi	AUDv	0
Agranular insular cortex posterior part	ipsi	AIP	0
Granular insular cortex	ipsi	GI	0
Perirhinal cortex	ipsi	A35	2
Perirhinal cortex anterior portion layer 5	ipsi	PRhaL5	-0.5
Ectorhinal cortex	ipsi	A36	3
Postrhinal cortex	ipsi	POR	1
Motoric regions	ipsi	M	3
Lateral agranular prefrontal cortex	ipsi	AGl	0
Medial agranular prefrontal cortex	ipsi	AGm	0
Primary somatosensory cortex	ipsi	S1	0
Secondary somatosensory cortex	ipsi	S2	0
Primary visual cortex	ipsi	V1	0
Secondary visual cortex lateral area	ipsi	V2L	0
Primary visual cortex binocular area	ipsi	V1B	0
Laterolateral cortical visual area	ipsi	VISll	0
Anteromedial cortical visual area	ipsi	VISam	0
Ventral orbital cortex	ipsi	VO	0
Olfactory bulb A16	ipsi	MOB	0
Dorsal medial septum	ipsi	DMS	0
Dorsolateral septum	ipsi	DLSER	0
Lateral septal nucleus	ipsi	LS	-0.5
Ventrolateral septal region	ipsi	VLSER	0
Parabrachial pigmented nucleus	contra	PBP	-0.5
Paranigral nucleus	contra	PN	-0.5
Medial septal nucleus	contra	MS	1
Medial group of the dorsal thalamus	contra	MED	0
Mediodorsal thalamic nucleus	contra	MD	0

Key for weights

Value	Weight
-3	unknown
-2	fibers of passage
-1	not clear
-0.5	exists
0	not present
0.5	very light
1	light / sparse
1.5	light / moderate
2	moderate / dense
2.5	moderate / strong
3	strong
4	very strong