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Rat connectome



Ventral hippocampus left


Abbreviation
HIPPv
Color       
Superior regionsHippocampal regions

SynonymsAbbr.Language
Ventral hippocampusHIPPv 
Ventral hippocampal formation Eng
Ventral hippocampal region Eng
Regio inferior of the hippocampus Eng

SubregionsSide
Distal portion of the regio inferior of the hippocampusleft
Regio inferior of the ventral hippocampal formationleft
Regio superior of the ventral hippocampal formationleft
Supragranular cells of the ventral hippocampal formationleft

Output to

NameSideAbbr.WeightDetails
Lateral mammillary nucleus dorsal partipsiLMd0
Lateral mammillary nucleus ventral partipsiLMv0
Medial mammillary nucleus dorsal partipsiMMnd0
Medial mammillary nucleus ventral partipsiMMV0
Basal nucleusipsiBnc-0.5
Basolateral amygdaloid nucleusipsiBL3
Basomedial amygdaloid nucleusipsiBM3
Lateral amygdaloid nucleusipsiLA-0.5
Central amygdaloid nucleusipsiCe3
Ventral pallidumipsiVP0
Accumbens nucleusipsiAc3
Dorsomedial shellipsiAcbShdm1
Caudomedial accumbensipsiAcbCM2
Medial accumbens rostrocaudal extentipsiAcbMrc1
Lateral entorhinal cortexipsiLEnt4
Medial entorhinal cortexipsiMEnt3
Prelimbic cortexipsiPrL-0.5
Prelimbic cortex dorsal part layer 5ipsiPrLdL5-0.5
Infralimbic cortexipsiIL-0.5
Infralimbic cortex dorsal part layer 5ipsiILDoL5-0.5
Infralimbic cortex ventral part layer 2ipsiILvL2-0.5
Infralimbic cortex ventral part layer 3ipsiILvL3-0.5
Infralimbic cortex ventral part layer 4ipsiILvL4-0.5
Infralimbic cortex ventral part layer 5ipsiILvL5-0.5
Dorsal peduncular cortexipsiDP-0.5
Medial prefrontal cortexipsimPFC-0.5
Medial prefrontal cortex layer 5ipsimPFCL5-0.5
Lateral septal nucleusipsiLS3
Lateral septal nucleus ventral partipsiLSV3
Lateral septal nucleus ventrolateral quadrantipsiLSvLq-0.5
Lateral mammillary nucleus dorsal partcontraLMd0
Lateral mammillary nucleus ventral partcontraLMv0
Medial mammillary nucleus dorsal partcontraMMnd0
Medial mammillary nucleus ventral partcontraMMV0
Medial prefrontal cortexcontramPFC0

Input from

NameSideAbbr.WeightDetails
Dopaminergic nuclear complexipsiDoNC0.5
Ventral tegmental area A10ipsiVTA1.5
Locus coeruleusipsiLC3
Locus coeruleus anterior partipsiLCa3
Locus coeruleus caudal partipsiLCca2
Locus coeruleus coreipsiLCco1
Locus coeruleus dorsal partipsiLCD-0.5
Locus coeruleus medial partipsiLCcBM3
Locus coeruleus rostral partipsiLCRo1
Locus coeruleus ventral partipsiLCv0.5
Nucleus incertus pars compactaipsiNIc3
Dorsal raphe nucleusipsiDR1
Dorsal raphe nucleus pontine partipsiDRPo-0.5
Median raphe nucleusipsiMnR3
Medial raphe nucleusipsiMeR-0.5
Superior central raphe nucleusipsiCS-0.5
Diagonal band of BrocaipsiDBB-0.5
Nucleus of the diagonal band of Broca ventral partipsiVDBV3
Nucleus of the horizontal limb of the diagonal bandipsiHDB3
Lateral part of the nucleus of the horizontal limb of the diagonal bandipsiLPHDB0
Nucleus of the horizontal limb of the diagonal band marginal partipsiHDBma-0.5
Nucleus of the vertical limb of the diagonal bandipsiVDB3
Nucleus of the vertical limb of the diagonal band caudal partipsiVDBc2
Nucleus of the vertical limb of the diagonal band lateral partipsiVDBL0
Nucleus of the vertical limb of the diagonal band middle to caudal partipsiVDBmc-0.5
Nucleus of the vertical limb of the diagonal band rostral partipsiVDBR1
Nucleus of the vertical limb of the diagonal band ventral partipsiVDBve-0.5
Medial septal nucleusipsiMS3
Medial septal nucleus caudal partipsiMSc-0.5
Medial septal nucleus lateral partipsiMSLa-0.5
Medial septal nucleus rostral partipsiMSR1
Middle to caudal parts of the medial septumipsiMSmc-0.5
Medial septum vertical limbipsiMSvL3
Tuberomammillary nucleusipsiTuM1.5
Anterior hypothalamic areaipsiAHA-0.5
Posterior hypothalamic areaipsiPHA-0.5
Paraventricular hypothalamic nucleusipsiPa-0.5
Premammillary nucleusipsiPMAN1.5
Submammillothalamic nucleusipsiSMT-0.5
Supramammillar nucleusipsiSuM3
Supramammillar nucleus lateral partipsiSuML-0.5
Supramammillar nucleus medial partipsiSuMM3
Supramammillar nucleus posteromedial partipsiSuMpm1
Rhomboid thalamic nucleusipsiRh1
Intermediodorsal thalamic nucleusipsiIMD1
Midline group of the dorsal thalamusipsiMTN3
Paratenial thalamic nucleusipsiPT3
Paraventricular thalamic nucleusipsiPV3
Perireuniens nucleusipsiPRe-0.5
Reuniens thalamic nucleusipsiRe3
Reuniens thalamic nucleus lateral partipsiReL3
Reuniens thalamic nucleus ventral partipsiReV3
Reuniens thalamic nucleus central partipsiReC3
Laterodorsal thalamic nucleusipsiLD-0.5
Rostrocaudal thalamic nucleusipsiRCT1
Amygdaloid complexipsiAC-0.5
Basolateral amygdaloid nucleusipsiBL-0.5
Basomedial amygdaloid nucleusipsiBM-0.5
Anterior part of the lateral nucleusipsiLAa-0.5
Posterior part of the lateral nucleusipsiLAP-0.5
Anterior amygdaloid areaipsiAA-0.5
ClaustrumipsiCl-0.5
Bed nucleus of the anterior commissureipsiBAC0
Hilus of the dentate gyrusipsiHil1
Hilus of the dentate gyrus nonprincipal neuronsipsiHilnpn-0.5
Field CA1 of hippocampus layer stratum oriensipsiCA1or-0.5
Field CA3 of hippocampus layer stratum lucidumipsiCA3sl-0.5
Field CA3 of hippocampus layer stratum pyramidaleipsiCA3pyr1
Field CA3 of hippocampus layer stratum oriensipsiCA3or-0.5
Fimbria fornix regionipsififo-2
Fornixipsif-0.5
Entorhinal cortex layer 3ipsiEntL31
Caudomedial entorhinal cortexipsiCEnt3
Rostral caudomedial entorhinal cortexipsiCEntR-0.5
Dorsal intermediate entorhinal cortexipsiDIEnt3
Lateral entorhinal cortexipsiLEnt-0.5
Lateral entorhinal cortex layer 2ipsiLEntL23
Medial entorhinal cortexipsiMEnt3
Medial entorhinal cortex layer 2ipsiMEntLyL23
Medial entorhinal cortex ventral partipsiMEntV-0.5
Ventral intermediate entorhinal cortexipsiVIEnt3
Ventromedial entorhinal cortexipsiVMEA-0.5
Anterior cingulate cortexipsiACC0
Prelimbic cortex ventral partipsiPrLv2
Interpeduncular nucleus caudal subnucleusipsiIPC-0.5
Interpeduncular nucleus dorsal subnucleus magnocellular part caudal one thirdipsiIPRmcot-0.5
Interpeduncular nucleus lateral subnucleus caudal partipsiIPLc-0.5
Septal regionipsiSER-0.5
Dorsal medial septumipsiDMS0
Dorsolateral septumipsiDLSER0
Lateral septal nucleusipsiLS0.5
Ventrolateral septal regionipsiVLSER0
Ventral tegmental area A10contraVTA-0.5
Locus coeruleuscontraLC1
Dorsal raphe nucleuscontraDR-0.5
Medial raphe nucleuscontraMeR-0.5
Nucleus of the horizontal limb of the diagonal bandcontraHDB-0.5
Nucleus of the vertical limb of the diagonal bandcontraVDB-0.5
Medial septal nucleuscontraMS-0.5
Medial septum vertical limbcontraMSvL1
Submammillothalamic nucleuscontraSMT-0.5
Supramammillar nucleuscontraSuM1
Midline group of the dorsal thalamuscontraMTN-0.5
Paratenial thalamic nucleuscontraPT-0.5
Paraventricular thalamic nucleuscontraPV-0.5
Reuniens thalamic nucleuscontraRe-0.5
Reuniens thalamic nucleus lateral partcontraReL-0.5
Reuniens thalamic nucleus ventral partcontraReV-0.5
Infralimbic cortexcontraIL-0.5
Orbitomedial prefrontal cortexcontraOMPFC-0.5
Lateral orbitofrontal cortexcontraLOFC-0.5
Ventral orbitofrontal cortexcontraVOFC-0.5
Interpeduncular nucleus caudal subnucleuscontraIPC-0.5
Interpeduncular nucleus dorsal subnucleus magnocellular part caudal one thirdcontraIPRmcot-0.5
Interpeduncular nucleus lateral subnucleus caudal partcontraIPLc-0.5
Septal regioncontraSER-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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