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Rat connectome



Field CA3 of hippocampus layer stratum pyramidale left


Abbreviation
CA3pyr
Color       
Superior regionsField CA3 of hippocampus layers

SynonymsAbbr.Language
Field CA3 of hippocampus layer stratum pyramidaleCA3pyr 
Field CA3 of hippocampus layer stratum pyramidaleCA3L3sp 
Field CA3 pyramidal layerCA3spEng

SubregionsSide
Field CA3 of hippocampus layer stratum pyramidale adjacent to the extraventricular part of the mossy fiber layerleft
Field CA3 of hippocampus layer stratum pyramidale pyramidal cells near the stratum lucidumleft
Field CA3 of hippocampus layer stratum pyramidale pyramidal neuronsleft

Output to

NameSideAbbr.WeightDetails
Medial septal nucleusipsiMS-0.5
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0.5
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR1
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0
Accumbens nucleus shellipsiAcbSh1
CA1 pyramidal cells in the anterior hippocampal formationipsiAHCA1py3
Dorsal hippocampusipsiHIPPd3
Dentate gyrusipsiDG-0.5
Polymorph layer of the dentate gyrusipsiDGpo-0.5
Hilus of the dentate gyrusipsiHil1
Field CA1 of hippocampusipsiCA1-0.5
Field CA1 of hippocampus layer stratum lacunosum moleculare radiatumipsiCA1lm-0.5
Field CA1 of hippocampus layer stratum radiatumipsiCA1rad1
Field CA1 of hippocampus layer stratum pyramidale double projections cellsipsiCA1L3spdpc-0.5
Field CA1 of hippocampus layer stratum oriensipsiCA1or-0.5
CA1 domainsipsiCA1do-0.5
CA1 domain 2 stratum lacunosumipsiCA1do2sL4
Field CA3 of hippocampus layer stratum radiatumipsiCA3rad-0.5
Field CA3 of hippocampus layer stratum pyramidaleipsiCA3pyr-0.5
Field CA3 of hippocampus layer stratum pyramidale pyramidal cells near the stratum lucidumipsiCA3L3spPCL-2
Field CA3 of hippocampus layer stratum oriensipsiCA3or-0.5
SubiculumipsiS-0.5
Subiculum dorsal partipsiSd0
Ventral hippocampusipsiHIPPv1
Posterior-basal portion of the fornixipsipbf-2
Fimbriaipsifimb4
Parahippocampal regionipsiPHR-0.5
Parasubiculum intermediate partipsiPaSim1
Entorhinal cortexipsiEnt3
Septal regionipsiSER-0.5
Lateral septal nucleusipsiLS-0.5
Medial septal nucleuscontraMS-0.5
HippocampuscontraHIPP-0.5
Hippocampal regionscontraHIPPR-0.5
Dorsal hippocampuscontraHIPPd-0.5
Dentate gyruscontraDG-0.5
Inner molecular layer of the dentate gyruscontraIMLDG-0.5
Outer molecular layer of the dentate gyruscontraOML-0.5
Dentate gyrus molecular layer proximal one-thirdcontraDGmLpot3
Hilus of the dentate gyruscontraHil1
Field CA1 of hippocampuscontraCA13
Field CA1 of hippocampus stratum lacunosum-molecularecontraCA1LM3
Field CA1 of hippocampus layer stratum radiatum outer partcontraCA1L5sro3
CA1 domainscontraCA1do-0.5
Field CA3 of hippocampuscontraCA3-0.5
Field CA3 of hippocampus stratum lacunosum-molecularecontraCA3lm3
Posterior-basal portion of the fornixcontrapbf-2
Septal regioncontraSER-0.5
Lateral septal nucleuscontraLS-0.5

Input from

NameSideAbbr.WeightDetails
Midbrain extrapyramidal areaipsiMEA1
Median raphe nucleusipsiMnR1
Medial septum dorsal band complexipsiMSDB3
Diagonal band of BrocaipsiDBB-0.5
Nucleus of the horizontal limb of the diagonal bandipsiHDB-0.5
Nucleus of the vertical limb of the diagonal bandipsiVDB1
Medial septal nucleusipsiMS1
Medial septum dorsal band complex type 1 axon cellsipsiMSDBt1ac3
Medial preoptic areaipsiMPA-0.5
Caudal part of the dorsomedial hypothalamic nucleusipsiDMHyC1
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0
Dorsomedial hypothalamic areaipsiDMHyA-0.5
Posterior basolateral nucleusipsiBLP0.5
Ventromedial part of the lateral nucleusipsiLaVM0.5
Anterior amygdaloid areaipsiAA-0.5
Dentate gyrusipsiDG3
Outer molecular layer of the dentate gyrusipsiOML-0.5
Ectopic granule cells in the molecular layer of the dentate gyrusipsiDGmLegr-0.5
Granule cell layer of the dentate gyrusipsiDGgL-0.5
Granule cells of the granule cell layer of the dentate gyrusipsiGCgc-0.5
Hilus of the dentate gyrusipsiHil-0.5
Hilar mossy cellsipsiHilmc-2
Mossy cells in Amarals zone 4ipsiHilagrMc-2
Field CA1 of hippocampus layer stratum pyramidale double projections cellsipsiCA1L3spdpc-0.5
Field CA2 of hippocampus layer stratum pyramidale secondary axon of pyramidal cellsipsiCA2L3sapy-0.5
Field CA2 of hippocampus ventral partipsiCA2V1
Field CA3 of hippocampusipsiCA30.5
Field CA3 of hippocampus layer stratum lucidum spiny neuronsipsiCA3L4slsp1
Field CA3 of hippocampus layer stratum pyramidaleipsiCA3pyr-0.5
Field CA3 of hippocampus layer stratum pyramidale pyramidal cells near the stratum lucidumipsiCA3L3spPCL-0.5
Field CA3 of hippocampus layer stratum pyramidale pyramidal neuronsipsiCA3L3spy1
Field CA3 of hippocampus granule cellsipsiCA3Lgc-0.5
Field CA3 of hippocampus near the dentate gyrusipsiCA3ndg-2
Field CA3a of hippocampus pyramidal cell layer secondary axon of pyramidal cellsipsiCA3aLsapyc-0.5
Mossy fiber plexusipsimossyFP-2
Septal regionipsiSER1
Lateral septal nucleusipsiLS-0.5
Caudal part of the dorsomedial hypothalamic nucleuscontraDMHyC1
Dorsomedial hypothalamic areacontraDMHyA-0.5
HippocampuscontraHIPP1
Field CA2 of hippocampus layer stratum pyramidalecontraCA2pyr-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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