University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Internal basilar nucleus C1 left


Abbreviation
IBC1
Color       
Superior regionsCervical segment 1

SynonymsAbbr.Language
Noyau basilaire nucleus Fr
Intermediate basilar nucleus C1 Eng
Internal basilar nucleus C1IBC1Eng

Output to

NameSideAbbr.WeightDetails
Pontine nuclei caudal partipsiBPNc1
ThalamusipsiT3
Lateral group of the dorsal thalamusipsiLAT1
Posterior thalamic nuclear groupipsiPo1
Posterior thalamic nuclear group caudal partipsiPoca0
Ventral posterolateral thalamic nucleusipsiVPL1
Ventral posterolateral thalamic nucleus caudal partipsiVPLca0
Ventral posteromedial thalamic nucleusipsiVPM1
Intralaminar nucleiipsiILN1
Medial thalamic zoneipsiMTZ1
Nucleus of DarkschewitschcontraDk-0.5
Oculomotor nucleuscontra3-0.5
Caudomedial pontine nucleuscontraPoCM1
Medial pontine nucleuscontraMPoN3
Ventral lateral pontine graycontraVLPG-0.5
Intercollicular nucleuscontraInCo-0.5
Superior colliculuscontraSC-0.5
Medial part of the peduncular pontine nucleuscontraPPNM3
Peduncular pontine nucleus lateral partcontraPPNl-0.5
Edinger Westphal nucleuscontraEW-0.5
Interstitial nucleus of CajalcontraInC-0.5
Lateral pontine nucleuscontraLPn-0.5
Central part of the peduncular part of the pontine nucleuscontraPePoC1
Medial ventral pontine regioncontraBPNvM3
Pontine nuclei dorsal partcontraDBPn1
Central part of the ventral part of the pontine nucleuscontraBPNvC1
Pontine reticular nucleuscontraPRN-0.5
Pontine reticular nucleus caudal partcontraPNC1
Anteroventral thalamic nucleuscontraAV-0.5
Centrolateral thalamic nucleuscontraCL-0.5
Lateral group of the dorsal thalamuscontraLAT3
Lateral anterior nucleus of the dorsal thalamuscontraLAAT-0.5
Posterior thalamic nuclear groupcontraPo4
Posterior thalamic nuclear group medial partcontraPoMe1
Mediodorsal thalamic nucleuscontraMD-0.5
Ventral anterior-lateral complex of the thalamuscontraVAL-0.5
Ventrolateral thalamic nucleuscontraVL-0.5
Ventral posterolateral thalamic nucleuscontraVPL4
Ventral posteromedial thalamic nucleuscontraVPM4
Ventromedial thalamic nucleuscontraVM-0.5
Intralaminar nucleicontraILN4
Medial thalamic zonecontraMTZ-0.5
Pretectal regioncontraPRT-0.5

Input from

NameSideAbbr.WeightDetails
Dorsal root ganglion C4ipsiDRGC4-2
Cervical segment 6ipsiCS6-0.5
Cervical segment 7ipsiCS7-0.5
Dorsal root ganglion C7ipsiDRGC73
Cervical segment 8ipsiCS8-0.5
Dorsal root ganglion C8ipsiDRGC83
Thoracal segment 1ipsiT1-0.5
Primary somatosensory cortex forelimb region layer 5contraS1FL51
Primary somatosensory cortex forelimb region layer 6contraS1FL61
Median nerveipsimen-0.5
Ulnar nerveipsiuln-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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