University of Rostock

Department of Anatomy

Neuroscience Group

  Homepage

 Staff

 neuroVIISAS

 Rat connectome

 Other connectomes

 Neuroimaging

 Neurodegeneration

 Neuroproteomics

 Students

 Links

 Publications

Rat connectome



Thoracal segment 1 left


Abbreviation
T1
Color       
Superior regionsUpper thoracic spinal cord

SynonymsAbbr.Language
Thoracal segment 1T1Eng

SubregionsSide
Central autonomic area of thoracal segment 1left
Central cervical nucleus T1left
Dorsal nucleus T1left
Extra spinal segmental structures T1left
Intercalated nucleus paraependymal partleft
Intercalated nucleus T1left
Intermediolateral cell column T1left
Intermediomedial cell column T1left
Internal basilar nucleus T1left
Lateral cervical nucleus T1left
Lateral funiculus of thoracal segment 1left
Lateral horn of thoracal segment 1left
Lateral spinal nucleus T1left
Nucleus of dorsolateral funiculus T1left
Spinal cord layers T1left
Intermediolateral cell column pars funicularis T1left
Autonomic cell column T1left

Output to

NameSideAbbr.WeightDetails
Periaqueductal gray dorsal partipsiPAGd0.5
Periaqueductal gray laterodorsal partipsiPAGLD0.5
Periaqueductal gray medial partipsiPAGm0.5
Superior colliculus superficial layersipsiSCs0
Anterior lobeipsiAnL-0.5
Cerebellar lobule 2ipsiCERL22
Cerebellar lobule 8ipsiCERL82
Brachium conjunctivum medial partipsibconm-2
Reticular systemipsiRF-0.5
Ventral reticular formationipsiVRF-1
Pontine reticular nucleusipsiPRN-0.5
Ventrolateral pontine reticular formationipsivlPRF0.5
Parabrachial nucleus dorsal partipsiPBD3
Lateral reticular nucleusipsiLRt-0.5
Caudal part to the midportion of the lateral reticular nucleusipsiCaLRtMp0
Medullary reticular nucleusipsiMdD-0.5
Facial nucleus medial partipsi7M-0.5
Mesencephalic trigeminal nucleus dorsolateral partipsiMe5DL1
Insular portion of the insular trigeminal-cuneatus lateralis nucleusipsiii5CuL2
Deep magnocellular layer of the medullary dorsal hornipsiDmMDH-0.5
Spinal trigeminal nucleus interpolar part border regionipsiSp5Ib0.5
Spinal trigeminal nucleus interpolar part dorsolateralipsiSp5IdL0.5
Trigeminal ganglionipsi5Gn1
Spinal vestibular nucleusipsiSpVe-0.5
Medial vestibular nucleusipsiMVe1
Medial vestibular nucleus caudal partipsiMVeP-0.5
Medial vestibular nucleus magnocellular partipsiMVeMC3
Medial vestibular nucleus parvicellular partipsiMVePC1
Lateral vestibular nucleus caudal partipsiLVeCa1
Lateral vestibular nucleus caudoventral partipsiLVeCaV1
Dorsal column nucleiipsiDCN3
Cuneate nucleusipsiCu3
Cuneate nucleus lateral partipsiCuLa-0.5
Gracile nucleus principal partipsiGr1
Gracile ventral partipsiGrV-0.5
External cuneate nucleusipsiECu-0.5
Nucleus of the horizontal limb of the diagonal bandipsiHDB-0.5
Nucleus of the vertical limb of the diagonal bandipsiVDB-0.5
Medial septal nucleusipsiMS-0.5
Substantia innominataipsiSI-0.5
Lateral hypothalamic areaipsiLH2
Medial division of the hypothalamusipsiMdH2
Supraoptic decussationipsisox-2
Centrolateral thalamic nucleusipsiCL-0.5
Posterior thalamic nuclear groupipsiPo-0.5
Mediodorsal thalamic nucleusipsiMD-0.5
Midline group of the dorsal thalamusipsiMTN-0.5
Ventrobasal complexipsiVB-0.5
Intralaminar nucleiipsiILN-0.5
Posterior groupipsiPTG-0.5
Zona incertaipsiZI1
HabenulaipsiHAB-0.5
Cuneate fasciculusipsicu-2
Dorsal funiculusipsidfu-2
Lateral funiculusipsilf-2
Lateral funicleipsilfunc-2
Ventral spinocerebellar tractipsivsc-2
Amygdaloid complexipsiAC-0.5
Bed nucleus of the stria terminalisipsiBST-0.5
Globus pallidusipsiGP-0.5
Ventral pallidumipsiVP-0.5
Accumbens nucleusipsiAc-0.5
Cerebral cortexipsiCEC-0.5
Lateral septal nucleusipsiLS-0.5
Spinocerebellar tractipsisc-2
Internal basilar nucleus C1ipsiIBC1-0.5
Lumbar segment 1ipsiL1-0.5
Lumbar segment 2ipsiL2-0.5
Lumbar segment 3ipsiL3-0.5
Lumbar segment 4ipsiL4-0.5
Lumbar segment 5ipsiL5-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL5-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL6-0.5
Periaqueductal gray dorsal partcontraPAGd1
Periaqueductal gray laterodorsal partcontraPAGLD1
Periaqueductal gray medial partcontraPAGm1
Superior colliculus superficial layerscontraSCs0
Cerebellar lobule 2contraCERL22
Cerebellar lobule 8contraCERL82
Reticular systemcontraRF1
Ventral reticular formationcontraVRF-1
Ventrolateral pontine reticular formationcontravlPRF0
Caudal part to the midportion of the lateral reticular nucleuscontraCaLRtMp0
Spinal trigeminal nucleus rostral partcontraSp5ncR1
Cuneate nucleuscontraCu1
Dorsal column nuclei middle partcontraDCNm-0.5
Gracile ventral partcontraGrV-0.5
External cuneate nucleuscontraECu-0.5
Inferior olive dorsal nucleuscontraIOD-0.5
Lateral hypothalamic areacontraLH3
Medial division of the hypothalamuscontraMdH3
Anterior group of the dorsal thalamuscontraATN1
Central medial thalamic nucleuscontraCM1
Centrolateral thalamic nucleuscontraCL1
Paracentral thalamic nucleuscontraPC1
Parafascicular thalamic nucleuscontraPF1
Rhomboid thalamic nucleuscontraRh1
Posterior thalamic nuclear groupcontraPo1
Mediodorsal thalamic nucleuscontraMD1
Submedius thalamic nucleuscontraSub1
Paratenial thalamic nucleuscontraPT1
Paraventricular thalamic nucleuscontraPV1
Reuniens thalamic nucleuscontraRe1
Ventrobasal complexcontraVB1
Posterior intralaminar thalamic nucleuscontraPIL-0.5
Laterodorsal thalamic nucleuscontraLD1
Posterior groupcontraPTG-0.5
Reticular thalamic nucleuscontraRt1
Zona incertacontraZI1
HabenulacontraHAB1
Primary somatosensory cortex forelimb region forepawcontraS1FP-0.5
Lateral geniculate complexcontraLG1
Medial geniculate nucleuscontraMG1
Lateral cervical nucleuscontraLatC-0.5
Superior cervical ganglionipsiAutoSCeG1
Brachial plexusipsibraPlex-0.5
Median nerveipsimen-0.5
Sciatic nerveipsisci-0.5
Ulnar nerveipsiuln-0.5
ForepawipsiOrgBSDFP-0.5
Adrenal glandipsiADRE-0.5
EyeipsiOrgEye-0.5
Flexor carpi radial muscleipsiMuscFcrM-0.5
Lumbar epaxial musclesipsiMuscLep-10

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG-0.5
Nucleus of DarkschewitschipsiDk1
Ventrolateral periaqueductal grayipsiVLPAG-0.5
Periventricular gray matteripsiPVG3
Lateral pontine tegmentumipsiLPTG3
Red nucleusipsiR1
Red nucleus caudal partipsiRnCa-0.5
Dorsomedial portion of the red nucleus caudal partipsiRnCaDm-0.5
Ventral tegmental area A10ipsiVTA-0.5
Ventrolateral tegmental areaipsiVLTg-0.5
Ventromedial mesencephalic tegmentumipsiVMTg3
Dorsal tegmental nucleusipsiDTg-0.5
Pedunculopontine tegmental nucleusipsiPPTg-0.5
Edinger Westphal nucleusipsiEW1
A5 noradrenaline cellsipsiA5-0.5
A7 noradrenaline cellsipsiA7-0.5
Locus coeruleusipsiLC3
Locus coeruleus ventral partipsiLCv3
Parapyramidal nucleusipsiPPy-0.5
Caudal ventrolateral ponsipsiCVLP-0.5
Reticular systemipsiRF-0.5
Ventral paraambigual region of the intermediate reticular zoneipsiVPAAiRt-0.5
Intermediate reticular zone C1ipsiIRtc1-0.5
Paramedian reticular nucleusipsiPMn-0.5
Rostroventrolateral reticular nucleus rostral partipsiRVLro-0.5
Ventrolateral reticular formationipsiVLRF-0.5
Mesencephalic reticular formationipsiMRF3
Pontine reticular nucleus ventral partipsiPnV1
Ventrolateral pontine reticular formationipsivlPRF0.5
Cuneiforme nucleusipsiCnF0.5
Koelliker Fuse nucleusipsiKF1
Gigantocellular reticular nucleusipsiGi1
Gigantocellular reticular nucleus alpha partipsiGiA2
Gigantocellular reticular nucleus dorsorostral partipsiGiDR-0.5
Lateral reticular nucleusipsiLRt-0.5
Medial subnucleus reticularis ventralis ventral partipsiMSRVv-0.5
Medullary reticular nucleus dorsal partipsiMdDd-0.5
Parvicellular reticular nucleusipsiPCRt1
Subcoeruleus nucleusipsiSubC3
Medulla oblongataipsiMeOb3
C1 adrenaline cellsipsiC13
C1 adrenaline cells rostral partipsiC1ro-0.5
C2 adrenaline cellsipsiC2-0.5
Mesencephalic trigeminal nucleusipsiMe5-0.5
Principal sensory trigeminal nucleusipsiPr5-0.5
Spinal trigeminal nucleus caudal partipsiSp5C-0.5
Deep magnocellular layer of the medullary dorsal hornipsiDmMDH0.5
Spinal trigeminal nucleus interpolar partipsiSp5I-0.5
Spinal trigeminal nucleus interpolar part ventrolateral partipsiSp5IVL0.5
Spinal trigeminal nucleus oral partipsiSp5O-0.5
Spinal trigeminal nucleus oral part ventromedial partipsiSp5OVM1
Trigeminal solitary transition zoneipsi5Sol-0.5
Spinal vestibular nucleusipsiSpVe-0.5
Superior vestibular nucleusipsiSuVe-0.5
Medial vestibular nucleusipsiMVe-0.5
Lateral vestibular nucleusipsiLVe-0.5
Nucleus of the solitary tract caudoventral partipsiSolcav-0.5
Nucleus of the solitary tract commissural partipsiSolC3
Nucleus of the solitary tract intermediate partipsiSolIM3
Nucleus of the solitary tract ventral partipsiSolV3
Nucleus of the solitary tract ventrolateral partipsiSolVL3
Raphe nucleiipsiRAN-0.5
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus dorsomedial subdivisionipsiDRdm-0.5
Raphe magnus nucleusipsiRMg2
Raphe obscurus nucleusipsiROb2
Raphe pallidus nucleusipsiRPa2
Ventral lateral medulla oblongataipsiMVL-0.5
Caudal ventrolateral medullaipsiCVLM3
Rostral ventrolateral medullaipsiRVLM3
Ventral lateral medulla oblongata midlevelipsiMVLmi3
Caudal midline medulla oblongataipsiCMeObm3
Caudal caudal midline medulla oblongataipsiCCMeObm-0.5
Rostral caudal midline medulla oblongataipsiRCMeObm-0.5
A1 noradrenergic cellsipsiA10.5
Dorsal column nuclei ventral partipsiDCNV-0.5
Ventrolateral aspects of dorsal column nucleiipsiDCNvL-0.5
Matrix region of the medullaipsiMx-0.5
Nucleus interfascicularis hypoglossiipsiNIFH-0.5
Nucleus of RolleripsiRo-0.5
Inferior olive dorsal nucleusipsiIOD1
Inferior olive lateral partipsiIOL1
Paragigantocellular reticular nucleusipsiPGi-0.5
Dorsal paragigantocellular nucleusipsiDPGi-0.5
Retroambiguus nucleusipsiRAmb-0.5
Rostral ventral medulla oblongataipsiRVMeO-0.5
Ventral surface of the medulla oblongataipsiVSMeO-0.5
Marginal surface of the ventral surface of the medulla oblongataipsimsVSMeO-0.5
Perifornical hypothalamic area [Preoptic anterior region]ipsiPFxPAR-0.5
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area perifornical partipsiPFx-0.5
Tuberal region of lateral hypothalamusipsiTuLH3
Lateral hypothalamic area [Lateral zone mammillary level]ipsiLHLZM-0.5
Anterior hypothalamic area lateral partipsiAHAl1
Dorsal hypothalamic areaipsiDA1
Dorsomedial hypothalamic nucleus rostral partipsiDMro-0.5
Posterior hypothalamic areaipsiPHA-0.5
Ventromedial hypothalamic nucleus ventral partipsiVMHV-0.5
Nucleus paraventricularis [Periventricular zone anterior region]ipsiPaPAR3
Dorsomedial paraventricular hypothalamic nucleusipsiPaDM-0.5
Paraventricular nucleus of the hypothalamus magnocellular division medial magnocellular partipsiPaAMm0.5
Paraventricular nucleus of the hypothalamus magnocellular division posterior magnocellular partipsiPaAMp2
Anterior magnocellular subdivision of the paraventricular nucleusipsiPaAMC0.5
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP3
Paraventricular hypothalamic nucleus parvicellular division dorsal partipsiPaPcD2
Paraventricular hypothalamic nucleus parvicellular division lateral partipsiPaPcL3
Paraventricular hypothalamic nucleus parvicellular division periventricular partipsiPaPP0.5
Paraventricular hypothalamic nucleus parvicellular part anterior partipsiPaPcA0.5
Paraventricular nucleus of the hypothalamus parvicellular division medial parvicellular part dorsal zoneipsiPVHmpd3
Paraventricular hypothalamic nucleus lateral parvocellular partipsiLPPa3
Paraventricular hypothalamic nucleus medial parvocellular partipsiMPPa3
Paraventricular hypothalamic nucleus medial parvocellular part ventral partipsiMPPav3
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP0.5
Paraventricular hypothalamic nucleus ventral part [Periventricular zone anterior region]ipsiPaV-0.5
Paraventricular hypothalamic nucleusipsiPa3
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag1
Paraventricular hypothalamic nucleus dorsal parvocellular divisionipsiPavPoD3
Paraventricular nucleus lateral parvocellular partipsiPaLp3
Paraventricular nucleus medial parvocellular partipsiPaMep-0.5
Medial parvocellular division of the paraventricular hypothalamic nucleus lateral componentipsiPaMepL-0.5
Medial parvocellular division of the paraventricular hypothalamus nucleus ventral medial componentipsiPaMepVM-0.5
Paraventricular nucleus medial parvicellular part dorsal zoneipsiPVHmpdo-0.5
Paraventricular nucleus dorsal partipsiPaDo-0.5
Periventricular hypothalamic nucleusipsiPe0.5
A11 dopamine cellsipsiA11-0.5
Perifornical nucleus dorsal partipsiPeFD-0.5
Perifornical nucleus lateral partipsiPeFL-0.5
Perifornical nucleus medial partipsiPeFM-0.5
Perifornical nucleus ventral partipsiPeFV-0.5
Retrochiasmatic areaipsiRCh1
Midline group of the dorsal thalamusipsiMTN-0.5
Zona incerta caudal partipsiZIC1
Zona incerta dorsolateral partipsiZIDL3
Zona incerta lateral partipsiZIL1
Zona incerta rostromedial partipsiZIrm0
Cingulate cortexipsiCg1
Frontal association cortexipsiFrA-0.5
Frontal association cortex layer 5ipsiFrALL5-0.5
Frontal association cortex posterior part layer 5ipsiFrApL5-0.5
Frontal cortex area 2ipsiFr22
Medial parietal association cortexipsiMPtA-0.5
Parietal cortex area 2ipsiPar21
Parietal association cortex anterior area layer 5bipsiPtAAL5b-0.5
Perirhinal cortexipsiA35-0.5
Lateral agranular prefrontal cortexipsiAGl0.5
Forelimb motor cortexipsiFMCx3
Anterior forepaw area of Neafrey and SievertipsiAFPCx1
Posterior forepaw area of Neafrey and SievertipsiPFPCx1
Rostral forelimb motor areaipsiRFMA0.5
Hindlimb motor cortexipsiHMCx1
Lateral agranular prefrontal cortex layer 5ipsiAGlL53
Primary somatosensory cortexipsiS12
Primary somatosensory cortex forelimb region forepawipsiS1FP-0.5
Secondary somatosensory cortexipsiS21
Forelimb region of secondary somatosensory cortexipsiS2FL-0.5
Paracommissural nucleus of the posterior commissureipsiPaC1
Pyramidal tractipsipy-2
Lateral spinal nucleus C1ipsiLSpC1-0.5
Spinal cord layer 5 C1ipsiSCL5C13
Spinal cord layer 6 C1ipsiSCL6C13
Spinal cord layer 3 C1ipsiSCL3C11
Spinal cord layer 4 C1ipsiSCL4C13
Spinal cord layer 1 C1ipsiSCL1C11
Spinal cord layer 2 C1ipsiSCL2C11
Spinal cord layer 7 C1ipsiSCL7C13
Spinal cord layer 8 C1ipsiSCL8C12
Lateral spinal nucleus C2ipsiLSpC2-0.5
Spinal cord layer 5 C2ipsiSCL5C23
Spinal cord layer 6 C2ipsiSCL6C23
Spinal cord layer 3 C2ipsiSCL3C21
Spinal cord layer 4 C2ipsiSCL4C23
Spinal cord layer 1 C2ipsiSCL1C21
Spinal cord layer 2 C2ipsiSCL2C21
Spinal cord layer 7 C2ipsiSCL7C23
Spinal cord layer 8 C2ipsiSCL8C22
Lateral spinal nucleus C3ipsiLSpC3-0.5
Spinal cord layer 5 C3ipsiSCL5C33
Spinal cord layer 6 C3ipsiSCL6C33
Spinal cord layer 3 C3ipsiSCL3C31
Spinal cord layer 4 C3ipsiSCL4C33
Spinal cord layer 1 C3ipsiSCL1C31
Spinal cord layer 2 C3ipsiSCL2C31
Spinal cord layer 7 C3ipsiSCL7C33
Spinal cord layer 8 C3ipsiSCL8C32
Lateral spinal nucleus C4ipsiLSpC4-0.5
Spinal cord layer 5 C4ipsiSCL5C43
Spinal cord layer 6 C4ipsiSCL6C43
Spinal cord layer 3 C4ipsiSCL3C41
Spinal cord layer 4 C4ipsiSCL4C43
Spinal cord layer 1 C4ipsiSCL1C41
Spinal cord layer 2 C4ipsiSCL2C41
Spinal cord layer 7 C4ipsiSCL7C43
Spinal cord layer 8 C4ipsiSCL8C42
Dorsal root ganglion C5ipsiDRGC5-0.5
Lateral spinal nucleus C5ipsiLSpC5-0.5
Spinal cord layer 5 C5ipsiSCL5C53
Spinal cord layer 6 C5ipsiSCL6C53
Spinal cord layer 3 C5ipsiSCL3C51
Spinal cord layer 4 C5ipsiSCL4C53
Spinal cord layer 1 C5ipsiSCL1C51
Spinal cord layer 2 C5ipsiSCL2C51
Spinal cord layer 7 C5ipsiSCL7C53
Spinal cord layer 8 C5ipsiSCL8C52
Dorsal root ganglion C6ipsiDRGC6-0.5
Lateral spinal nucleus C6ipsiLSpC6-0.5
Spinal cord layer 5 C6ipsiSCL5C63
Spinal cord layer 6 C6ipsiSCL6C63
Spinal cord layer 3 C6ipsiSCL3C61
Spinal cord layer 4 C6ipsiSCL4C63
Spinal cord layer 1 C6ipsiSCL1C61
Spinal cord layer 2 C6ipsiSCL2C61
Spinal cord layer 7 C6ipsiSCL7C63
Spinal cord layer 8 C6ipsiSCL8C62
Lateral spinal nucleus C7ipsiLSpC7-0.5
Spinal cord layer 5 C7ipsiSCL5C73
Spinal cord layer 6 C7ipsiSCL6C73
Spinal cord layer 3 C7ipsiSCL3C71
Spinal cord layer 4 C7ipsiSCL4C73
Spinal cord layer 1 C7ipsiSCL1C71
Spinal cord layer 2 C7ipsiSCL2C71
Spinal cord layer 7 C7ipsiSCL7C73
Spinal cord layer 8 C7ipsiSCL8C72
Lateral spinal nucleus C8ipsiLSpC8-0.5
Spinal cord layer 5 C8ipsiSCL5C83
Spinal cord layer 6 C8ipsiSCL6C83
Spinal cord layer 3 C8ipsiSCL3C81
Spinal cord layer 4 C8ipsiSCL4C83
Spinal cord layer 1 C8ipsiSCL1C81
Spinal cord layer 2 C8ipsiSCL2C81
Spinal cord layer 7 C8ipsiSCL7C83
Spinal cord layer 8 C8ipsiSCL8C82
Lateral spinal nucleus T1ipsiLSpT1-0.5
Spinal cord layer 5 T1ipsiSCL5T13
Spinal cord layer 6 T1ipsiSCL6T13
Spinal cord layer 3 T1ipsiSCL3T11
Spinal cord layer 4 T1ipsiSCL4T13
Spinal cord layer 1 T1ipsiSCL1T11
Spinal cord layer 2 T1ipsiSCL2T11
Spinal cord layer 7 T1ipsiSCL7T13
Spinal cord layer 8 T1ipsiSCL8T12
Spinal cord layer 5 T2ipsiSCL5T23
Spinal cord layer 6 T2ipsiSCL6T23
Spinal cord layer 3 T2ipsiSCL3T21
Spinal cord layer 4 T2ipsiSCL4T23
Spinal cord layer 1 T2ipsiSCL1T21
Spinal cord layer 2 T2ipsiSCL2T21
Spinal cord layer 7 T2ipsiSCL7T23
Spinal cord layer 8 T2ipsiSCL8T22
Spinal cord layer 5 T3ipsiSCL5T33
Spinal cord layer 6 T3ipsiSCL6T33
Spinal cord layer 3 T3ipsiSCL3T31
Spinal cord layer 4 T3ipsiSCL4T33
Spinal cord layer 1 T3ipsiSCL1T31
Spinal cord layer 2 T3ipsiSCL2T31
Spinal cord layer 7 T3ipsiSCL7T33
Spinal cord layer 8 T3ipsiSCL8T32
Spinal cord layer 5 T4ipsiSCL5T43
Spinal cord layer 6 T4ipsiSCL6T43
Spinal cord layer 3 T4ipsiSCL3T41
Spinal cord layer 4 T4ipsiSCL4T43
Spinal cord layer 1 T4ipsiSCL1T41
Spinal cord layer 2 T4ipsiSCL2T41
Spinal cord layer 7 T4ipsiSCL7T43
Spinal cord layer 8 T4ipsiSCL8T42
Spinal cord layer 5 T5ipsiSCL5T53
Spinal cord layer 6 T5ipsiSCL6T53
Spinal cord layer 3 T5ipsiSCL3T51
Spinal cord layer 4 T5ipsiSCL4T53
Spinal cord layer 1 T5ipsiSCL1T51
Spinal cord layer 2 T5ipsiSCL2T51
Spinal cord layer 7 T5ipsiSCL7T53
Spinal cord layer 8 T5ipsiSCL8T52
Spinal cord layer 5 T6ipsiSCL5T63
Spinal cord layer 6 T6ipsiSCL6T63
Spinal cord layer 3 T6ipsiSCL3T61
Spinal cord layer 4 T6ipsiSCL4T63
Spinal cord layer 1 T6ipsiSCL1T61
Spinal cord layer 2 T6ipsiSCL2T61
Spinal cord layer 7 T6ipsiSCL7T63
Spinal cord layer 8 T6ipsiSCL8T62
Spinal cord layer 5 T7ipsiSCL5T73
Spinal cord layer 6 T7ipsiSCL6T73
Spinal cord layer 3 T7ipsiSCL3T71
Spinal cord layer 4 T7ipsiSCL4T73
Spinal cord layer 1 T7ipsiSCL1T71
Spinal cord layer 2 T7ipsiSCL2T71
Spinal cord layer 7 T7ipsiSCL7T73
Spinal cord layer 8 T7ipsiSCL8T72
Spinal cord layer 5 T8ipsiSCL5T83
Spinal cord layer 6 T8ipsiSCL6T83
Spinal cord layer 3 T8ipsiSCL3T81
Spinal cord layer 4 T8ipsiSCL4T83
Spinal cord layer 1 T8ipsiSCL1T81
Spinal cord layer 2 T8ipsiSCL2T81
Spinal cord layer 7 T8ipsiSCL7T83
Spinal cord layer 8 T8ipsiSCL8T82
Spinal cord layer 5 T9ipsiSCL5T93
Spinal cord layer 6 T9ipsiSCL6T93
Spinal cord layer 3 T9ipsiSCL3T91
Spinal cord layer 4 T9ipsiSCL4T93
Spinal cord layer 1 T9ipsiSCL1T91
Spinal cord layer 2 T9ipsiSCL2T91
Spinal cord layer 7 T9ipsiSCL7T93
Spinal cord layer 8 T9ipsiSCL8T92
Spinal cord layer 5 T10ipsiSCL5T103
Spinal cord layer 6 T10ipsiSCL6T103
Spinal cord layer 3 T10ipsiSCL3T101
Spinal cord layer 4 T10ipsiSCL4T103
Spinal cord layer 1 T10ipsiSCL1T101
Spinal cord layer 2 T10ipsiSCL2T101
Spinal cord layer 7 T10ipsiSCL7T103
Spinal cord layer 8 T10ipsiSCL8T102
Spinal cord layer 5 T11ipsiSCL5T113
Spinal cord layer 6 T11ipsiSCL6T113
Spinal cord layer 3 T11ipsiSCL3T111
Spinal cord layer 4 T11ipsiSCL4T113
Spinal cord layer 1 T11ipsiSCL1T111
Spinal cord layer 2 T11ipsiSCL2T111
Spinal cord layer 7 T11ipsiSCL7T113
Spinal cord layer 8 T11ipsiSCL8T112
Spinal cord layer 5 T12ipsiSCL5T123
Spinal cord layer 6 T12ipsiSCL6T123
Spinal cord layer 3 T12ipsiSCL3T121
Spinal cord layer 4 T12ipsiSCL4T123
Spinal cord layer 1 T12ipsiSCL1T121
Spinal cord layer 2 T12ipsiSCL2T121
Spinal cord layer 7 T12ipsiSCL7T123
Spinal cord layer 8 T12ipsiSCL8T122
Spinal cord layer 5 T13ipsiSCL5T133
Spinal cord layer 6 T13ipsiSCL6T133
Spinal cord layer 3 T13ipsiSCL3T131
Spinal cord layer 4 T13ipsiSCL4T133
Spinal cord layer 1 T13ipsiSCL1T131
Spinal cord layer 2 T13ipsiSCL2T131
Spinal cord layer 7 T13ipsiSCL7T133
Spinal cord layer 8 T13ipsiSCL8T132
Spinal cord layer 5 L1ipsiSCL5L13
Spinal cord layer 6 L1ipsiSCL6L13
Spinal cord layer 3 L1ipsiSCL3L11
Spinal cord layer 4 L1ipsiSCL4L13
Spinal cord layer 1 L1ipsiSCL1L11
Spinal cord layer 2 L1ipsiSCL2L11
Spinal cord layer 7 L1ipsiSCL7L13
Spinal cord layer 8 L1ipsiSCL8L12
Spinal cord layer 5 L2ipsiSCL5L23
Spinal cord layer 6 L2ipsiSCL6L23
Spinal cord layer 3 L2ipsiSCL3L21
Spinal cord layer 4 L2ipsiSCL4L23
Spinal cord layer 1 L2ipsiSCL1L21
Spinal cord layer 2 L2ipsiSCL2L21
Spinal cord layer 7 L2ipsiSCL7L23
Spinal cord layer 8 L2ipsiSCL8L22
Spinal cord layer 5 L3ipsiSCL5L33
Spinal cord layer 6 L3ipsiSCL6L33
Spinal cord layer 3 L3ipsiSCL3L31
Spinal cord layer 4 L3ipsiSCL4L33
Spinal cord layer 1 L3ipsiSCL1L31
Spinal cord layer 2 L3ipsiSCL2L31
Spinal cord layer 7 L3ipsiSCL7L33
Spinal cord layer 8 L3ipsiSCL8L32
Spinal cord layer 5 L4ipsiSCL5L43
Spinal cord layer 6 L4ipsiSCL6L43
Spinal cord layer 3 L4ipsiSCL3L41
Spinal cord layer 4 L4ipsiSCL4L43
Spinal cord layer 1 L4ipsiSCL1L41
Spinal cord layer 2 L4ipsiSCL2L41
Spinal cord layer 7 L4ipsiSCL7L43
Spinal cord layer 8 L4ipsiSCL8L42
Spinal cord layer 5 L5ipsiSCL5L53
Spinal cord layer 6 L5ipsiSCL6L53
Spinal cord layer 3 L5ipsiSCL3L51
Spinal cord layer 4 L5ipsiSCL4L53
Spinal cord layer 1 L5ipsiSCL1L51
Spinal cord layer 2 L5ipsiSCL2L51
Spinal cord layer 7 L5ipsiSCL7L53
Spinal cord layer 8 L5ipsiSCL8L52
Spinal cord layer 5 L6ipsiSCL5L63
Spinal cord layer 6 L6ipsiSCL6L63
Spinal cord layer 3 L6ipsiSCL3L61
Spinal cord layer 4 L6ipsiSCL4L63
Spinal cord layer 1 L6ipsiSCL1L61
Spinal cord layer 2 L6ipsiSCL2L61
Spinal cord layer 7 L6ipsiSCL7L63
Spinal cord layer 8 L6ipsiSCL8L62
Spinal cord layer 5 S1ipsiSCL5S13
Spinal cord layer 6 S1ipsiSCL6S13
Spinal cord layer 3 S1ipsiSCL3S11
Spinal cord layer 4 S1ipsiSCL4S13
Spinal cord layer 1 S1ipsiSCL1S11
Spinal cord layer 2 S1ipsiSCL2S11
Spinal cord layer 7 S1ipsiSCL7S13
Spinal cord layer 8 S1ipsiSCL8S12
Spinal cord layer 5 S2ipsiSCL5S23
Spinal cord layer 6 S2ipsiSCL6S23
Spinal cord layer 3 S2ipsiSCL3S21
Spinal cord layer 4 S2ipsiSCL4S23
Spinal cord layer 1 S2ipsiSCL1S21
Spinal cord layer 2 S2ipsiSCL2S21
Spinal cord layer 7 S2ipsiSCL7S23
Spinal cord layer 8 S2ipsiSCL8S22
Spinal cord layer 5 S3ipsiSCL5S33
Spinal cord layer 6 S3ipsiSCL6S33
Spinal cord layer 3 S3ipsiSCL3S31
Spinal cord layer 4 S3ipsiSCL4S33
Spinal cord layer 1 S3ipsiSCL1S31
Spinal cord layer 2 S3ipsiSCL2S31
Spinal cord layer 7 S3ipsiSCL7S33
Spinal cord layer 8 S3ipsiSCL8S32
Spinal cord layer 5 S4ipsiSCL5S43
Spinal cord layer 6 S4ipsiSCL6S43
Spinal cord layer 3 S4ipsiSCL3S41
Spinal cord layer 4 S4ipsiSCL4S43
Spinal cord layer 1 S4ipsiSCL1S41
Spinal cord layer 2 S4ipsiSCL2S41
Spinal cord layer 7 S4ipsiSCL7S43
Spinal cord layer 8 S4ipsiSCL8S42
Central graycontraCG-0.5
Nucleus of DarkschewitschcontraDk0.5
Ventrolateral periaqueductal graycontraVLPAG-0.5
Lateral pontine tegmentumcontraLPTG-0.5
Red nucleuscontraR3
Superior colliculus caudolateral partcontraSCCL2
Pedunculopontine tegmental nucleuscontraPPTg-0.5
Edinger Westphal nucleuscontraEW0.5
Locus coeruleuscontraLC0.5
Paramedian reticular nucleuscontraPMn-0.5
Ventrolateral reticular formationcontraVLRF-0.5
Deep mesencephalic nucleuscontraDpMe-0.5
Pontine reticular nucleus oral partcontraPnO-0.5
Pontine reticular nucleus ventral partcontraPnV0.5
Ventrolateral pontine reticular formationcontravlPRF0
Pontine reticular nucleus caudal partcontraPNC-0.5
Cuneiforme nucleuscontraCnF0.5
Gigantocellular reticular nucleuscontraGi2
Gigantocellular reticular nucleus dorsorostral partcontraGiDR-0.5
Medullary reticular nucleus ventral partcontraMdV-0.5
Parvicellular reticular nucleuscontraPCRt0.5
Subcoeruleus nucleuscontraSubC0.5
Spinal trigeminal nucleus oral part ventromedial partcontraSp5OVM1
Ventral part of spinal trigeminal nucleus oral partcontraSp5OV-0.5
Medial vestibular nucleuscontraMVe-0.5
Nucleus of the solitary tract commissural partcontraSolC3
Nucleus of the solitary tract intermediate partcontraSolIM3
Nucleus of the solitary tract ventral partcontraSolV3
Nucleus of the solitary tract ventrolateral partcontraSolVL3
Dorsal raphe nucleuscontraDR3
Raphe magnus nucleuscontraRMg-0.5
Raphe obscurus nucleuscontraROb-0.5
Raphe pallidus nucleuscontraRPa-0.5
Caudal ventrolateral medullacontraCVLM-0.5
Rostral ventrolateral medullacontraRVLM3
Paraambiguus nucleuscontraPaAmb3
Retroambiguus nucleuscontraRAmb3
Ventral surface of the medulla oblongatacontraVSMeO-0.5
Marginal surface of the ventral surface of the medulla oblongatacontramsVSMeO-0.5
Perifornical hypothalamic area [Preoptic anterior region]contraPFxPAR-0.5
Lateral hypothalamic areacontraLH1
Paraventricular hypothalamic nucleuscontraPa1
Cingulate cortexcontraCg1
Frontal association cortexcontraFrA-0.5
Frontal association cortex layer 5contraFrALL5-0.5
Frontal association cortex posterior part layer 5contraFrApL5-0.5
Frontal cortex area 2contraFr22
Medial parietal association cortexcontraMPtA-0.5
Parietal cortex area 2contraPar23
Parietal association cortex anterior area layer 5bcontraPtAAL5b-0.5
Perirhinal cortexcontraA35-0.5
Prefrontal cortexcontraPFC-0.5
Lateral agranular prefrontal cortexcontraAGl3
Caudal part of lateral agranular prefrontal cortexcontraAGlc-0.5
Forelimb motor cortexcontraFMCx3
Anterior forepaw area of Neafrey and SievertcontraAFPCx3
Posterior forepaw area of Neafrey and SievertcontraPFPCx3
Rostral forelimb motor areacontraRFMA-0.5
Hindlimb motor cortexcontraHMCx1
Lateral agranular prefrontal cortex layer 5contraAGlL53
Lateral agranular prefrontal cortex rostral partcontraAGlR-0.5
Medial agranular prefrontal cortexcontraAGm-0.5
Primary somatosensory cortexcontraS12
Primary somatosensory cortex forelimb regioncontraS1FL3
Primary somatosensory cortex forelimb region forepawcontraS1FP-0.5
Secondary somatosensory cortexcontraS23
Forelimb region of secondary somatosensory cortexcontraS2FL-0.5
Somatosensory cortex layer 5bcontraSRL5b3
Paracommissural nucleus of the posterior commissurecontraPaC0.5
Lateral spinal nucleus C1contraLSpC1-0.5
Spinal cord layer 6 C1contraSCL6C11
Spinal cord layer 3 C1contraSCL3C11
Spinal cord layer 4 C1contraSCL4C11
Spinal cord layer 1 C1contraSCL1C10
Spinal cord layer 2 C1contraSCL2C10
Spinal cord layer 7 C1contraSCL7C11.5
Spinal cord layer 8 C1contraSCL8C11.5
Lateral spinal nucleus C2contraLSpC2-0.5
Spinal cord layer 6 C2contraSCL6C21
Spinal cord layer 3 C2contraSCL3C21
Spinal cord layer 4 C2contraSCL4C21
Spinal cord layer 1 C2contraSCL1C20
Spinal cord layer 2 C2contraSCL2C20
Spinal cord layer 7 C2contraSCL7C21.5
Spinal cord layer 8 C2contraSCL8C21.5
Lateral spinal nucleus C3contraLSpC3-0.5
Spinal cord layer 6 C3contraSCL6C31
Spinal cord layer 3 C3contraSCL3C31
Spinal cord layer 4 C3contraSCL4C31
Spinal cord layer 1 C3contraSCL1C30
Spinal cord layer 2 C3contraSCL2C30
Spinal cord layer 7 C3contraSCL7C31.5
Spinal cord layer 8 C3contraSCL8C31.5
Lateral spinal nucleus C4contraLSpC4-0.5
Spinal cord layer 6 C4contraSCL6C41
Spinal cord layer 3 C4contraSCL3C41
Spinal cord layer 4 C4contraSCL4C41
Spinal cord layer 1 C4contraSCL1C40
Spinal cord layer 7 C4contraSCL7C41.5
Spinal cord layer 8 C4contraSCL8C41.5
Lateral spinal nucleus C5contraLSpC5-0.5
Spinal cord layer 6 C5contraSCL6C51
Spinal cord layer 3 C5contraSCL3C51
Spinal cord layer 4 C5contraSCL4C51
Spinal cord layer 1 C5contraSCL1C50
Spinal cord layer 7 C5contraSCL7C51.5
Spinal cord layer 8 C5contraSCL8C51.5
Lateral spinal nucleus C6contraLSpC6-0.5
Spinal cord layer 6 C6contraSCL6C61
Spinal cord layer 3 C6contraSCL3C61
Spinal cord layer 4 C6contraSCL4C61
Spinal cord layer 1 C6contraSCL1C60
Spinal cord layer 7 C6contraSCL7C61.5
Spinal cord layer 8 C6contraSCL8C61.5
Lateral spinal nucleus C7contraLSpC7-0.5
Spinal cord layer 6 C7contraSCL6C71
Spinal cord layer 3 C7contraSCL3C71
Spinal cord layer 4 C7contraSCL4C71
Spinal cord layer 1 C7contraSCL1C70
Spinal cord layer 7 C7contraSCL7C71.5
Spinal cord layer 8 C7contraSCL8C71.5
Lateral spinal nucleus C8contraLSpC8-0.5
Spinal cord layer 6 C8contraSCL6C81
Spinal cord layer 3 C8contraSCL3C81
Spinal cord layer 4 C8contraSCL4C81
Spinal cord layer 1 C8contraSCL1C80
Spinal cord layer 7 C8contraSCL7C81.5
Spinal cord layer 8 C8contraSCL8C81.5
Lateral spinal nucleus T1contraLSpT1-0.5
Spinal cord layer 6 T1contraSCL6T11
Spinal cord layer 3 T1contraSCL3T11
Spinal cord layer 4 T1contraSCL4T11
Spinal cord layer 1 T1contraSCL1T10
Spinal cord layer 7 T1contraSCL7T11.5
Spinal cord layer 8 T1contraSCL8T11.5
Spinal cord layer 6 T2contraSCL6T21
Spinal cord layer 3 T2contraSCL3T21
Spinal cord layer 4 T2contraSCL4T21
Spinal cord layer 1 T2contraSCL1T20
Spinal cord layer 7 T2contraSCL7T21.5
Spinal cord layer 8 T2contraSCL8T21.5
Spinal cord layer 6 T3contraSCL6T31
Spinal cord layer 3 T3contraSCL3T31
Spinal cord layer 4 T3contraSCL4T31
Spinal cord layer 1 T3contraSCL1T30
Spinal cord layer 7 T3contraSCL7T31.5
Spinal cord layer 8 T3contraSCL8T31.5
Spinal cord layer 6 T4contraSCL6T41
Spinal cord layer 3 T4contraSCL3T41
Spinal cord layer 4 T4contraSCL4T41
Spinal cord layer 1 T4contraSCL1T40
Spinal cord layer 7 T4contraSCL7T41.5
Spinal cord layer 8 T4contraSCL8T41.5
Spinal cord layer 6 T5contraSCL6T51
Spinal cord layer 3 T5contraSCL3T51
Spinal cord layer 4 T5contraSCL4T51
Spinal cord layer 1 T5contraSCL1T50
Spinal cord layer 7 T5contraSCL7T51.5
Spinal cord layer 8 T5contraSCL8T51.5
Spinal cord layer 6 T6contraSCL6T61
Spinal cord layer 3 T6contraSCL3T61
Spinal cord layer 4 T6contraSCL4T61
Spinal cord layer 1 T6contraSCL1T60
Spinal cord layer 2 T6contraSCL2T60
Spinal cord layer 7 T6contraSCL7T61.5
Spinal cord layer 8 T6contraSCL8T61.5
Spinal cord layer 6 T7contraSCL6T71
Spinal cord layer 3 T7contraSCL3T71
Spinal cord layer 1 T7contraSCL1T70
Spinal cord layer 4 T7contraSCL4T71
Spinal cord layer 2 T7contraSCL2T70
Spinal cord layer 7 T7contraSCL7T71.5
Spinal cord layer 8 T7contraSCL8T71.5
Spinal cord layer 6 T8contraSCL6T81
Spinal cord layer 3 T8contraSCL3T81
Spinal cord layer 4 T8contraSCL4T81
Spinal cord layer 1 T8contraSCL1T80
Spinal cord layer 2 T8contraSCL2T80
Spinal cord layer 7 T8contraSCL7T81.5
Spinal cord layer 8 T8contraSCL8T81.5
Spinal cord layer 6 T9contraSCL6T91
Spinal cord layer 3 T9contraSCL3T91
Spinal cord layer 4 T9contraSCL4T91
Spinal cord layer 1 T9contraSCL1T90
Spinal cord layer 2 T9contraSCL2T90
Spinal cord layer 7 T9contraSCL7T91.5
Spinal cord layer 8 T9contraSCL8T91.5
Spinal cord layer 6 T10contraSCL6T101
Spinal cord layer 3 T10contraSCL3T101
Spinal cord layer 4 T10contraSCL4T101
Spinal cord layer 1 T10contraSCL1T100
Spinal cord layer 2 T10contraSCL2T100
Spinal cord layer 7 T10contraSCL7T101.5
Spinal cord layer 8 T10contraSCL8T101.5
Spinal cord layer 6 T11contraSCL6T111
Spinal cord layer 3 T11contraSCL3T111
Spinal cord layer 4 T11contraSCL4T111
Spinal cord layer 1 T11contraSCL1T110
Spinal cord layer 2 T11contraSCL2T110
Spinal cord layer 7 T11contraSCL7T111.5
Spinal cord layer 8 T11contraSCL8T111.5
Spinal cord layer 6 T12contraSCL6T121
Spinal cord layer 3 T12contraSCL3T121
Spinal cord layer 4 T12contraSCL4T121
Spinal cord layer 1 T12contraSCL1T120
Spinal cord layer 2 T12contraSCL2T120
Spinal cord layer 7 T12contraSCL7T121.5
Spinal cord layer 8 T12contraSCL8T121.5
Spinal cord layer 6 T13contraSCL6T131
Spinal cord layer 3 T13contraSCL3T131
Spinal cord layer 4 T13contraSCL4T131
Spinal cord layer 1 T13contraSCL1T130
Spinal cord layer 2 T13contraSCL2T130
Spinal cord layer 7 T13contraSCL7T131.5
Spinal cord layer 8 T13contraSCL8T131.5
Spinal cord layer 6 L1contraSCL6L11
Spinal cord layer 3 L1contraSCL3L11
Spinal cord layer 4 L1contraSCL4L11
Spinal cord layer 1 L1contraSCL1L10
Spinal cord layer 2 L1contraSCL2L10
Spinal cord layer 7 L1contraSCL7L11.5
Spinal cord layer 8 L1contraSCL8L11.5
Spinal cord layer 6 L2contraSCL6L21
Spinal cord layer 3 L2contraSCL3L21
Spinal cord layer 4 L2contraSCL4L21
Spinal cord layer 1 L2contraSCL1L20
Spinal cord layer 2 L2contraSCL2L20
Spinal cord layer 7 L2contraSCL7L21.5
Spinal cord layer 8 L2contraSCL8L21.5
Spinal cord layer 6 L3contraSCL6L31
Spinal cord layer 3 L3contraSCL3L31
Spinal cord layer 4 L3contraSCL4L31
Spinal cord layer 1 L3contraSCL1L30
Spinal cord layer 2 L3contraSCL2L30
Spinal cord layer 7 L3contraSCL7L31.5
Spinal cord layer 8 L3contraSCL8L31.5
Spinal cord layer 6 L4contraSCL6L41
Spinal cord layer 3 L4contraSCL3L41
Spinal cord layer 4 L4contraSCL4L41
Spinal cord layer 1 L4contraSCL1L40
Spinal cord layer 2 L4contraSCL2L40
Spinal cord layer 7 L4contraSCL7L41.5
Spinal cord layer 8 L4contraSCL8L41.5
Spinal cord layer 6 L5contraSCL6L51
Spinal cord layer 3 L5contraSCL3L51
Spinal cord layer 4 L5contraSCL4L51
Spinal cord layer 1 L5contraSCL1L50
Spinal cord layer 2 L5contraSCL2L50
Spinal cord layer 7 L5contraSCL7L51.5
Spinal cord layer 8 L5contraSCL8L51.5
Spinal cord layer 6 L6contraSCL6L61
Spinal cord layer 3 L6contraSCL3L61
Spinal cord layer 4 L6contraSCL4L61
Spinal cord layer 1 L6contraSCL1L60
Spinal cord layer 2 L6contraSCL2L60
Spinal cord layer 7 L6contraSCL7L61.5
Spinal cord layer 8 L6contraSCL8L61.5
Spinal cord layer 6 S1contraSCL6S11
Spinal cord layer 3 S1contraSCL3S11
Spinal cord layer 4 S1contraSCL4S11
Spinal cord layer 1 S1contraSCL1S10
Spinal cord layer 2 S1contraSCL2S10
Spinal cord layer 7 S1contraSCL7S11.5
Spinal cord layer 8 S1contraSCL8S11.5
Spinal cord layer 6 S2contraSCL6S21
Spinal cord layer 3 S2contraSCL3S21
Spinal cord layer 4 S2contraSCL4S21
Spinal cord layer 1 S2contraSCL1S20
Spinal cord layer 2 S2contraSCL2S20
Spinal cord layer 7 S2contraSCL7S21.5
Spinal cord layer 8 S2contraSCL8S21.5
Spinal cord layer 6 S3contraSCL6S31
Spinal cord layer 3 S3contraSCL3S31
Spinal cord layer 4 S3contraSCL4S31
Spinal cord layer 1 S3contraSCL1S30
Spinal cord layer 2 S3contraSCL2S30
Spinal cord layer 7 S3contraSCL7S31.5
Spinal cord layer 8 S3contraSCL8S31.5
Spinal cord layer 6 S4contraSCL6S41
Spinal cord layer 3 S4contraSCL3S41
Spinal cord layer 4 S4contraSCL4S41
Spinal cord layer 1 S4contraSCL1S40
Spinal cord layer 2 S4contraSCL2S40
Spinal cord layer 7 S4contraSCL7S41.5
Spinal cord layer 8 S4contraSCL8S41.5
Hypoglossal nerveipsi12P-0.5
Median nerveipsimen-0.5
Costal pleuraipsiOrgsCostPleu0

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





Homepage | Staff | neuroVIISAS | Rat connectome | Other connectomes | Neuroimaging | Neurodegeneration | Students | Links | Publications