University of Rostock

Department of Anatomy

Neuroscience Group

  Homepage

 Staff

 neuroVIISAS

 Rat connectome

 Other connectomes

 Neuroimaging

 Neurodegeneration

 Neuroproteomics

 Students

 Links

 Publications

Rat connectome



Interstitial nucleus of Cajal right


Abbreviation
InC
Color       
Superior regionsMesencephalon

SynonymsAbbr.Language
Interstitial nucleus of CajalINCEng
Interstitial nucleus of CajalInCEng
Cajals interstital nucleus Eng
Cajal's interstital nucleus Eng

SubregionsSide
Interstitial nucleus of Cajal shell regionright
Lateral edge of the interstitial nucleus of Cajalright
Rostral part of the interstitial nucleus of Cajalright
Dorsolateral part of the interstitial nucleus of Cajalright
Central interstitial nucleus of Cajalright
Large interstitial nucleus of Cajalright

Output to

NameSideAbbr.WeightDetails
Oculomotor systemcontraOCS1
Oculomotor nucleuscontra3-0.5
Ventral periaqueductal graycontraVPAG1
Ventral tegmental nucleuscontraVTg0
Edinger Westphal nucleuscontraEW-0.5
Interstitial nucleus of CajalcontraInC3
Cerebellar lobule 9contraCERL9-0.5
Pontine nucleicontraPn0.5
Mesencephalic reticular formationcontraMRF1
Pontine reticular nucleus oral partcontraPnO1
Pontine reticular nucleus caudal partcontraPNC1
Facial nucleuscontra72
Facial nucleus dorsolateral subnucleuscontra7DL1
Facial nucleus lateral subnucleuscontra7L1
Facial nucleus medial partcontra7M1
Facial nucleus ventral partcontra7V1
Facial nucleus dorsal intermediate subnucleuscontra7DI1
Hypoglossal nucleuscontra12S-0.5
Inferior olivecontraIO3
Lateral paragigantocellular nucleuscontraLPGi1
Medial preoptic areacontraMPA1
Dorsomedial hypothalamic nucleuscontraDMHy1
Lateral zonecontraLHA1
Anterior hypothalamic areacontraAHA1
Posterior hypothalamic areacontraPHA1
Ventromedial hypothalamic nucleuscontraVMH1
Paraventricular hypothalamic nucleuscontraPa1
Zona incertacontraZI1
Ventral funiculuscontravf-2
Cervical segment 1contraCS12
Ventral horn C1contraVHC10.5
Cervical segment 2contraCS22
Ventral horn C2contraVHC20.5
Cervical segment 3contraCS32
Ventral horn C3contraVHC30.5
Cervical segment 4contraCS42
Ventral horn C4contraVHC40.5
Cervical segment 5contraCS52
Ventral horn C5contraVHC51
Cervical segment 6contraCS62
Ventral horn C6contraVHC61
Cervical segment 7contraCS72
Ventral horn C7contraVHC71
Cervical segment 8contraCS82
Ventral horn C8contraVHC81
Ventral horn T1contraVHT10.5
Ventral horn T2contraVHT20.5
Ventral horn T3contraVHT30.5
Ventral horn T4contraVHT40.5
Ventral horn of spinal cordcontraVHMES-0.5
Medial longitudinal fasciculusipsimlf-2
Ventral half of the medial longitudinal fasciculusipsivhmlf-2
Paralemniscal reticular formationipsiPLRF-0.5
Nucleus of DarkschewitschipsiDk2
Oculomotor nucleusipsi33
Central tegmental tractipsictg-2
Ventral tegmental area A10ipsiVTA-0.5
Lateral tegmental nucleusipsiLTN-0.5
Ventral tegmental nucleusipsiVTg3
Dorsal tegmental nucleusipsiDTg-0.5
Dorsal tegmental nucleus ventromedial partipsiDTgVM1
Edinger Westphal nucleusipsiEW3
FlocculusipsiFl-0.5
Pontine nucleiipsiPn1
Bulbar locomotor regionipsiBLR-0.5
Mesencephalic reticular formationipsiMRF1
Pontine reticular nucleusipsiPRN3
Pontine reticular nucleus oral partipsiPnO1
Pontine reticular nucleus caudal partipsiPNC1
Parabrachial nucleusipsiPB-0.5
Facial nucleusipsi72
Facial nucleus dorsolateral subnucleusipsi7DL1
Facial nucleus lateral subnucleusipsi7L1
Facial nucleus medial partipsi7M1
Facial nucleus ventral partipsi7V1
Facial nucleus dorsal intermediate subnucleusipsi7DI0
Hypoglossal nucleusipsi12S-0.5
Hypoglossal motor nucleusipsi12M1
Supratrigeminal nucleusipsiSu51
Medial vestibular nucleusipsiMVe3
Inferior vestibular nucleusipsiIVN3
Raphe nucleiipsiRAN-0.5
Dorsal raphe nucleusipsiDR-0.5
Median raphe nucleusipsiMnR-2
Raphe magnus nucleusipsiRMg0
Nucleus of RolleripsiRo2
Inferior oliveipsiIO4
Inferior olive dorsal nucleus lateral partipsiIODL2
Inferior olive medial nucleus caudal partipsiIOMc3
Inferior olive medial nucleus lateral partipsiIOML2
Inferior olive principal nucleusipsiIOPr3
Inferior olive principal nucleus rostral partipsiIOPrR2
Lateral paragigantocellular nucleusipsiLPGi1
Medial preoptic areaipsiMPA1
Medial preoptic nucleusipsiMPO0
Dorsomedial hypothalamic nucleusipsiDMHy2
Lateral zoneipsiLHA2
Anterior hypothalamic areaipsiAHA1
Posterior hypothalamic areaipsiPHA2
Ventromedial hypothalamic nucleusipsiVMH1
Paraventricular hypothalamic nucleusipsiPa1
Anteroventral thalamic nucleusipsiAV1
Central medial thalamic nucleusipsiCM2
Centrolateral thalamic nucleusipsiCL3
Paracentral thalamic nucleusipsiPC1
Paracentral thalamic nucleus caudal partipsiPC-c3
Paracentral thalamic nucleus rostral partipsiPC-r2
Parafascicular thalamic nucleus lateral partipsiPFL4
Parafascicular thalamic nucleus medial partipsiPFM2
Rhomboid thalamic nucleusipsiRh1
Mediodorsal thalamic nucleusipsiMD1
Intermediodorsal thalamic nucleusipsiIMD0
Submedius thalamic nucleusipsiSub0
Paratenial thalamic nucleusipsiPT-0.5
Paraventricular thalamic nucleus anterior partipsiPVA0
Paraventricular thalamic nucleus medial partipsiPVM0
Paraventricular thalamic nucleus middle divisionipsiPVMiD1
Paraventricular thalamic nucleus posterior partipsiPVP0
Reuniens thalamic nucleusipsiRe2
Ventral posterior thalamic nucleus parvicellular partipsiVPPC0
Ventromedial thalamic nucleus caudal partipsiVMc3
Oval paracentral thalamic nucleusipsiOPC1
Zona incertaipsiZI3
Amygdaloid complexipsiAC-0.5
Central amygdaloid nucleus lateral divisionipsiCeL-0.5
Subthalamic nucleusipsiSTh1
Ventral lateral geniculate nucleusipsiVLG3
Spinal cordipsiMES-0.5
Gray matter of spinal cordipsiGMES3
Anterior funiculusipsianF-2
Ventral funiculusipsivf-2
Cervical segmentsipsiCSeg1
Cervical segment 1ipsiCS13
Spinal cord layers C1ipsiSCLC1-0.5
Spinal cord layer 5 C1ipsiSCL5C1-0.5
Spinal cord layer 6 C1ipsiSCL6C1-0.5
Spinal cord layer 3 C1ipsiSCL3C1-0.5
Spinal cord layer 4 C1ipsiSCL4C1-0.5
Ventral horn C1ipsiVHC11
Spinal cord layer 7 C1ipsiSCL7C1-0.5
Cervical segment 2ipsiCS23
Spinal cord layers C2ipsiSCLC2-0.5
Spinal cord layer 5 C2ipsiSCL5C2-0.5
Spinal cord layer 6 C2ipsiSCL6C2-0.5
Spinal cord layer 3 C2ipsiSCL3C2-0.5
Spinal cord layer 4 C2ipsiSCL4C2-0.5
Ventral horn C2ipsiVHC21
Spinal cord layer 7 C2ipsiSCL7C2-0.5
Cervical segment 3ipsiCS33
Spinal cord layers C3ipsiSCLC3-0.5
Spinal cord layer 5 C3ipsiSCL5C3-0.5
Spinal cord layer 6 C3ipsiSCL6C3-0.5
Spinal cord layer 3 C3ipsiSCL3C3-0.5
Spinal cord layer 4 C3ipsiSCL4C3-0.5
Ventral horn C3ipsiVHC31
Spinal cord layer 7 C3ipsiSCL7C3-0.5
Cervical segment 4ipsiCS43
Spinal cord layers C4ipsiSCLC4-0.5
Spinal cord layer 5 C4ipsiSCL5C4-0.5
Spinal cord layer 6 C4ipsiSCL6C4-0.5
Spinal cord layer 3 C4ipsiSCL3C4-0.5
Spinal cord layer 4 C4ipsiSCL4C4-0.5
Ventral horn C4ipsiVHC41
Spinal cord layer 7 C4ipsiSCL7C4-0.5
Cervical segment 5ipsiCS53
Spinal cord layers C5ipsiSCLC5-0.5
Area X C5ipsiSCL10C51.5
Spinal cord layer 5 C5ipsiSCL5C51.5
Spinal cord layer 6 C5ipsiSCL6C51.5
Spinal cord layer 3 C5ipsiSCL3C51.5
Spinal cord layer 4 C5ipsiSCL4C51.5
Spinal cord layer 1 C5ipsiSCL1C51
Spinal cord layer 2 C5ipsiSCL2C51.5
Ventral horn C5ipsiVHC51
Spinal cord layer 7 C5ipsiSCL7C51.5
Spinal cord layer 8 C5ipsiSCL8C51.5
Spinal cord layer 9 C5ipsiSCL9C51.5
Cervical segment 6ipsiCS63
Spinal cord layers C6ipsiSCLC6-0.5
Area X C6ipsiSCL10C61.5
Spinal cord layer 5 C6ipsiSCL5C61.5
Spinal cord layer 6 C6ipsiSCL6C61.5
Spinal cord layer 3 C6ipsiSCL3C61.5
Spinal cord layer 4 C6ipsiSCL4C61.5
Spinal cord layer 1 C6ipsiSCL1C61
Spinal cord layer 2 C6ipsiSCL2C61.5
Ventral horn C6ipsiVHC61
Spinal cord layer 7 C6ipsiSCL7C61.5
Spinal cord layer 8 C6ipsiSCL8C61.5
Spinal cord layer 9 C6ipsiSCL9C61.5
Cervical segment 7ipsiCS73
Spinal cord layers C7ipsiSCLC7-0.5
Area X C7ipsiSCL10C71.5
Spinal cord layer 5 C7ipsiSCL5C71.5
Spinal cord layer 6 C7ipsiSCL6C71.5
Spinal cord layer 3 C7ipsiSCL3C71.5
Spinal cord layer 4 C7ipsiSCL4C71.5
Spinal cord layer 1 C7ipsiSCL1C71
Spinal cord layer 2 C7ipsiSCL2C71.5
Ventral horn C7ipsiVHC71
Spinal cord layer 7 C7ipsiSCL7C71.5
Spinal cord layer 8 C7ipsiSCL8C71.5
Spinal cord layer 9 C7ipsiSCL9C71.5
Cervical segment 8ipsiCS83
Spinal cord layers C8ipsiSCLC8-0.5
Area X C8ipsiSCL10C81
Spinal cord layer 5 C8ipsiSCL5C81
Spinal cord layer 6 C8ipsiSCL6C81
Spinal cord layer 3 C8ipsiSCL3C81
Spinal cord layer 4 C8ipsiSCL4C81
Spinal cord layer 1 C8ipsiSCL1C81
Spinal cord layer 2 C8ipsiSCL2C81
Ventral horn C8ipsiVHC81
Spinal cord layer 7 C8ipsiSCL7C81
Spinal cord layer 8 C8ipsiSCL8C81
Spinal cord layer 9 C8ipsiSCL9C81
Thoracal segmentsipsiTSeg3
Ventral horn T1ipsiVHT11
Ventral horn T2ipsiVHT21
Ventral horn T3ipsiVHT31
Ventral horn T4ipsiVHT41
Thoracal segment 7ipsiT7-0.5
Area X T7ipsiSCL10T71.5
Spinal cord layer 5 T7ipsiSCL5T71.5
Spinal cord layer 6 T7ipsiSCL6T71.5
Spinal cord layer 3 T7ipsiSCL3T71.5
Spinal cord layer 1 T7ipsiSCL1T71.5
Spinal cord layer 4 T7ipsiSCL4T71.5
Spinal cord layer 2 T7ipsiSCL2T71.5
Spinal cord layer 7 T7ipsiSCL7T71.5
Spinal cord layer 8 T7ipsiSCL8T71.5
Spinal cord layer 9 T7ipsiSCL9T71.5
Thoracal segment 8ipsiT8-0.5
Area X T8ipsiSCL10T81.5
Spinal cord layer 5 T8ipsiSCL5T81.5
Spinal cord layer 6 T8ipsiSCL6T81.5
Spinal cord layer 3 T8ipsiSCL3T81.5
Spinal cord layer 4 T8ipsiSCL4T81.5
Spinal cord layer 1 T8ipsiSCL1T81.5
Spinal cord layer 2 T8ipsiSCL2T81.5
Spinal cord layer 7 T8ipsiSCL7T81.5
Spinal cord layer 8 T8ipsiSCL8T81.5
Spinal cord layer 9 T8ipsiSCL9T81.5
Area X T13ipsiSCL10T131.5
Spinal cord layer 5 T13ipsiSCL5T131.5
Spinal cord layer 6 T13ipsiSCL6T131.5
Spinal cord layer 3 T13ipsiSCL3T131.5
Spinal cord layer 4 T13ipsiSCL4T131.5
Spinal cord layer 1 T13ipsiSCL1T131.5
Spinal cord layer 2 T13ipsiSCL2T131.5
Spinal cord layer 7 T13ipsiSCL7T131.5
Spinal cord layer 8 T13ipsiSCL8T131.5
Spinal cord layer 9 T13ipsiSCL9T131.5
Lumbar segment 1ipsiL1-0.5
Area X L1ipsiSCL10L11.5
Spinal cord layer 5 L1ipsiSCL5L11.5
Spinal cord layer 6 L1ipsiSCL6L11.5
Spinal cord layer 3 L1ipsiSCL3L11.5
Spinal cord layer 4 L1ipsiSCL4L11.5
Spinal cord layer 1 L1ipsiSCL1L11.5
Spinal cord layer 2 L1ipsiSCL2L11.5
Ventral horn L1ipsiVHL1-0.5
Spinal cord layer 7 L1ipsiSCL7L11.5
Spinal cord layer 8 L1ipsiSCL8L11.5
Spinal cord layer 9 L1ipsiSCL9L11.5
Lumbar segment 2ipsiL21.5
Ventral horn L2ipsiVHL2-0.5
Lumbar segment 3ipsiL31.5
Ventral horn L3ipsiVHL3-0.5
Lumbar segment 4ipsiL4-0.5
Ventral horn L4ipsiVHL4-0.5
Lumbar segment 5ipsiL5-0.5
Ventral horn L5ipsiVHL5-0.5
Lumbar segment 6ipsiL6-0.5
Ventral horn L6ipsiVHL6-0.5
Ventral horn S1ipsiVHSa1-0.5
Ventral horn S2ipsiVHSa2-0.5
Ventral horn S3ipsiVHSa3-0.5
Ventral horn S4ipsiVHSa4-0.5
Ventral horn of spinal cordipsiVHMES-0.5
Ventral spinal cordipsiVMES-0.5
Superior laryngeal nerveipsisLn-0.5
Orbicularis oculi musclecontraMuscOrbOc-0.5
Orbicularis oculi muscleipsiMuscOrbOc1

Input from

NameSideAbbr.WeightDetails
Central graycontraCG-0.5
Optic nerve layer of the superior colliculuscontraOp0.5
Intermediate gray layer of the superior colliculuscontraInG1.5
Ventromedial margin of the stratum griseum intermediale of the superior colliculuscontraVMmSCi-0.5
Deep gray layer of the superior colliculuscontraDpG1
Laterodorsal tegmental nucleuscontraLDTg3
Interstitial nucleus of CajalcontraInC3
CerebellumcontraCERE-0.5
Dorsolateral humpcontraCERcndl0
Interposed cerebellar nucleicontraICN2
Anterior interposed nucleuscontraAIN0
Interposed cerebellar nuclei caudal partcontraICNC3
Posterior interposed nucleuscontraCERpin1
Rostrocaudal extent of the interposed complexcontraICNrc1
Lateral cerebellar nucleuscontraCERL2
Lateral cerebellar nucleus ventral partcontraCERLV3
Rostral half of the ventral lateral cerebellar nucleuscontraCERLVr1
Medial cerebellar nucleuscontraMed3
Interstitial cell groupscontraCERIc-0.5
Medial pontine graycontraMePG-0.5
Ventral pontine graycontraVPG-0.5
Pontine nuclei ventromedial portion of the peripeduncular partcontraPnVMPP-0.5
Pontine nucleus ventral partcontraBPNv-0.5
Isthmic reticular formationcontraisRT-0.5
Mesencephalic reticular formationcontraMRF3
Pontine reticular nucleus caudal partcontraPNC3
Gigantocellular reticular nucleuscontraGi2
Superior vestibular nucleuscontraSuVe1
Lateral vestibular nucleuscontraLVe-0.5
Infracerebellar nucleuscontraInf3
Olivary pretectal nucleuscontraOPT-0.5
Zona incertacontraZI1
Pretectal regioncontraPRT-0.5
Dorsal part of the crus cerebricontradcp-2
Medial terminal nucleus of the accessory optic tractcontraMT3
Dorsal part of the medial terminal nucleus of the accessory optic tractcontraMTD2
Frontal polar cortexcontraFP1
Agranular insular cortexcontraAI1
Agranular insular cortex dorsal partcontraAID1
Agranular insular cortex ventral partcontraAIV1
Lateral orbital cortexcontraLO1
Nucleus of the posterior commissurecontraPCom0
Internal basilar nucleus C1contraIBC1-0.5
Lateral cervical nucleus C1contraLatCC1-0.5
Lateral spinal nucleus C1contraLSpC1-0.5
Spinal cord layer 5 C1contraSCL5C1-0.5
Spinal cord layer 3 C1contraSCL3C1-0.5
Spinal cord layer 4 C1contraSCL4C1-0.5
Spinal cord layer 1 C1contraSCL1C1-0.5
Spinal cord layer 7 C1contraSCL7C1-0.5
Spinal cord layer 8 C1contraSCL8C1-0.5
Internal basilar nucleus C2contraIBC2-0.5
Lateral cervical nucleus C2contraLatCC2-0.5
Lateral spinal nucleus C2contraLSpC2-0.5
Spinal cord layer 5 C2contraSCL5C2-0.5
Spinal cord layer 3 C2contraSCL3C2-0.5
Spinal cord layer 4 C2contraSCL4C2-0.5
Spinal cord layer 1 C2contraSCL1C2-0.5
Spinal cord layer 7 C2contraSCL7C2-0.5
Spinal cord layer 8 C2contraSCL8C2-0.5
Internal basilar nucleus C3contraIBC3-0.5
Lateral cervical nucleus C3contraLatCC3-0.5
Lateral spinal nucleus C3contraLSpC3-0.5
Spinal cord layer 5 C3contraSCL5C3-0.5
Spinal cord layer 3 C3contraSCL3C3-0.5
Spinal cord layer 4 C3contraSCL4C3-0.5
Spinal cord layer 1 C3contraSCL1C3-0.5
Spinal cord layer 7 C3contraSCL7C3-0.5
Spinal cord layer 8 C3contraSCL8C3-0.5
Internal basilar nucleus C4contraIBC4-0.5
Lateral cervical nucleus C4contraLatCC4-0.5
Lateral spinal nucleus C4contraLSpC4-0.5
Spinal cord layer 5 C4contraSCL5C4-0.5
Spinal cord layer 3 C4contraSCL3C4-0.5
Spinal cord layer 4 C4contraSCL4C4-0.5
Spinal cord layer 1 C4contraSCL1C4-0.5
Spinal cord layer 7 C4contraSCL7C4-0.5
Spinal cord layer 8 C4contraSCL8C4-0.5
Internal basilar nucleus C5contraIBC5-0.5
Lateral cervical nucleus C5contraLatCC5-0.5
Lateral spinal nucleus C5contraLSpC5-0.5
Spinal cord layer 5 C5contraSCL5C5-0.5
Spinal cord layer 3 C5contraSCL3C5-0.5
Spinal cord layer 4 C5contraSCL4C5-0.5
Spinal cord layer 1 C5contraSCL1C5-0.5
Spinal cord layer 7 C5contraSCL7C5-0.5
Spinal cord layer 8 C5contraSCL8C5-0.5
Internal basilar nucleus C6contraIBC6-0.5
Lateral cervical nucleus C6contraLatCC6-0.5
Lateral spinal nucleus C6contraLSpC6-0.5
Spinal cord layer 5 C6contraSCL5C6-0.5
Spinal cord layer 3 C6contraSCL3C6-0.5
Spinal cord layer 4 C6contraSCL4C6-0.5
Spinal cord layer 1 C6contraSCL1C6-0.5
Spinal cord layer 7 C6contraSCL7C6-0.5
Spinal cord layer 8 C6contraSCL8C6-0.5
Lateral cervical nucleus C7contraLatCC7-0.5
Lateral spinal nucleus C7contraLSpC7-0.5
Spinal cord layer 5 C7contraSCL5C7-0.5
Spinal cord layer 3 C7contraSCL3C7-0.5
Spinal cord layer 4 C7contraSCL4C7-0.5
Spinal cord layer 1 C7contraSCL1C7-0.5
Spinal cord layer 7 C7contraSCL7C7-0.5
Spinal cord layer 8 C7contraSCL8C7-0.5
Lateral cervical nucleus C8contraLatCC8-0.5
Lateral spinal nucleus C8contraLSpC8-0.5
Spinal cord layer 5 C8contraSCL5C8-0.5
Spinal cord layer 3 C8contraSCL3C8-0.5
Spinal cord layer 4 C8contraSCL4C8-0.5
Spinal cord layer 1 C8contraSCL1C8-0.5
Spinal cord layer 7 C8contraSCL7C8-0.5
Spinal cord layer 8 C8contraSCL8C8-0.5
Lateral cervical nucleus T1contraLatCT1-0.5
Lateral spinal nucleus T1contraLSpT1-0.5
Spinal cord layer 5 T1contraSCL5T1-0.5
Spinal cord layer 3 T1contraSCL3T1-0.5
Spinal cord layer 4 T1contraSCL4T1-0.5
Spinal cord layer 1 T1contraSCL1T1-0.5
Spinal cord layer 7 T1contraSCL7T1-0.5
Spinal cord layer 8 T1contraSCL8T1-0.5
Lateral cervical nucleus T2contraLatCT2-0.5
Lateral spinal nucleus T2contraLSpT2-0.5
Spinal cord layer 5 T2contraSCL5T2-0.5
Spinal cord layer 3 T2contraSCL3T2-0.5
Spinal cord layer 4 T2contraSCL4T2-0.5
Spinal cord layer 1 T2contraSCL1T2-0.5
Spinal cord layer 7 T2contraSCL7T2-0.5
Spinal cord layer 8 T2contraSCL8T2-0.5
Lateral cervical nucleus T3contraLatCT3-0.5
Lateral spinal nucleus T3contraLSpT3-0.5
Spinal cord layer 5 T3contraSCL5T3-0.5
Spinal cord layer 3 T3contraSCL3T3-0.5
Spinal cord layer 4 T3contraSCL4T3-0.5
Spinal cord layer 1 T3contraSCL1T3-0.5
Spinal cord layer 7 T3contraSCL7T3-0.5
Spinal cord layer 8 T3contraSCL8T3-0.5
Lateral cervical nucleus T4contraLatCT4-0.5
Lateral spinal nucleus T4contraLSpT4-0.5
Spinal cord layer 5 T4contraSCL5T4-0.5
Spinal cord layer 3 T4contraSCL3T4-0.5
Spinal cord layer 4 T4contraSCL4T4-0.5
Spinal cord layer 1 T4contraSCL1T4-0.5
Spinal cord layer 7 T4contraSCL7T4-0.5
Spinal cord layer 8 T4contraSCL8T4-0.5
Lateral cervical nucleus T5contraLatCT5-0.5
Lateral spinal nucleus T5contraLSpT5-0.5
Spinal cord layer 5 T5contraSCL5T5-0.5
Spinal cord layer 3 T5contraSCL3T5-0.5
Spinal cord layer 4 T5contraSCL4T5-0.5
Spinal cord layer 1 T5contraSCL1T5-0.5
Spinal cord layer 7 T5contraSCL7T5-0.5
Spinal cord layer 8 T5contraSCL8T5-0.5
Lateral cervical nucleus T6contraLatCT6-0.5
Lateral spinal nucleus T6contraLSpT6-0.5
Spinal cord layer 5 T6contraSCL5T6-0.5
Spinal cord layer 3 T6contraSCL3T6-0.5
Spinal cord layer 4 T6contraSCL4T6-0.5
Spinal cord layer 1 T6contraSCL1T6-0.5
Spinal cord layer 7 T6contraSCL7T6-0.5
Spinal cord layer 8 T6contraSCL8T6-0.5
Lateral cervical nucleus T7contraLatCT7-0.5
Lateral spinal nucleus T7contraLSpT7-0.5
Spinal cord layer 5 T7contraSCL5T7-0.5
Spinal cord layer 3 T7contraSCL3T7-0.5
Spinal cord layer 4 T7contraSCL4T7-0.5
Spinal cord layer 1 T7contraSCL1T7-0.5
Spinal cord layer 7 T7contraSCL7T7-0.5
Spinal cord layer 8 T7contraSCL8T7-0.5
Lateral cervical nucleus T8contraLatCT8-0.5
Lateral spinal nucleus T8contraLSpT8-0.5
Spinal cord layer 5 T8contraSCL5T8-0.5
Spinal cord layer 3 T8contraSCL3T8-0.5
Spinal cord layer 4 T8contraSCL4T8-0.5
Spinal cord layer 1 T8contraSCL1T8-0.5
Spinal cord layer 7 T8contraSCL7T8-0.5
Spinal cord layer 8 T8contraSCL8T8-0.5
Lateral cervical nucleus T9contraLatCT9-0.5
Lateral spinal nucleus T9contraLSpT9-0.5
Spinal cord layer 5 T9contraSCL5T9-0.5
Spinal cord layer 3 T9contraSCL3T9-0.5
Spinal cord layer 4 T9contraSCL4T9-0.5
Spinal cord layer 1 T9contraSCL1T9-0.5
Spinal cord layer 7 T9contraSCL7T9-0.5
Spinal cord layer 8 T9contraSCL8T9-0.5
Lateral cervical nucleus T10contraLatCT10-0.5
Lateral spinal nucleus T10contraLSpT10-0.5
Spinal cord layer 5 T10contraSCL5T10-0.5
Spinal cord layer 3 T10contraSCL3T10-0.5
Spinal cord layer 4 T10contraSCL4T10-0.5
Spinal cord layer 1 T10contraSCL1T10-0.5
Spinal cord layer 7 T10contraSCL7T10-0.5
Spinal cord layer 8 T10contraSCL8T10-0.5
Lateral cervical nucleus T11contraLatCT11-0.5
Lateral spinal nucleus T11contraLSpT11-0.5
Spinal cord layer 5 T11contraSCL5T11-0.5
Spinal cord layer 3 T11contraSCL3T11-0.5
Spinal cord layer 4 T11contraSCL4T11-0.5
Spinal cord layer 1 T11contraSCL1T11-0.5
Spinal cord layer 7 T11contraSCL7T11-0.5
Spinal cord layer 8 T11contraSCL8T11-0.5
Lateral cervical nucleus T12contraLatCT12-0.5
Lateral spinal nucleus T12contraLSpT12-0.5
Spinal cord layer 5 T12contraSCL5T12-0.5
Spinal cord layer 3 T12contraSCL3T12-0.5
Spinal cord layer 4 T12contraSCL4T12-0.5
Spinal cord layer 1 T12contraSCL1T12-0.5
Spinal cord layer 7 T12contraSCL7T12-0.5
Spinal cord layer 8 T12contraSCL8T12-0.5
Lateral cervical nucleus T13contraLatCT13-0.5
Lateral spinal nucleus T13contraLSpT13-0.5
Spinal cord layer 5 T13contraSCL5T13-0.5
Spinal cord layer 3 T13contraSCL3T13-0.5
Spinal cord layer 4 T13contraSCL4T13-0.5
Spinal cord layer 1 T13contraSCL1T13-0.5
Spinal cord layer 7 T13contraSCL7T13-0.5
Spinal cord layer 8 T13contraSCL8T13-0.5
Lateral cervical nucleus L1contraLatCL1-0.5
Lateral spinal nucleus L1contraLSpL1-0.5
Spinal cord layer 5 L1contraSCL5L1-0.5
Spinal cord layer 3 L1contraSCL3L1-0.5
Spinal cord layer 4 L1contraSCL4L1-0.5
Spinal cord layer 1 L1contraSCL1L1-0.5
Spinal cord layer 7 L1contraSCL7L1-0.5
Spinal cord layer 8 L1contraSCL8L1-0.5
Lateral cervical nucleus L2contraLatCL2-0.5
Lateral spinal nucleus L2contraLSpL2-0.5
Spinal cord layer 5 L2contraSCL5L2-0.5
Spinal cord layer 3 L2contraSCL3L2-0.5
Spinal cord layer 4 L2contraSCL4L2-0.5
Spinal cord layer 1 L2contraSCL1L2-0.5
Spinal cord layer 7 L2contraSCL7L2-0.5
Spinal cord layer 8 L2contraSCL8L2-0.5
Lateral cervical nucleus L3contraLatCL3-0.5
Lateral spinal nucleus L3contraLSpL3-0.5
Spinal cord layer 5 L3contraSCL5L3-0.5
Spinal cord layer 3 L3contraSCL3L3-0.5
Spinal cord layer 4 L3contraSCL4L3-0.5
Spinal cord layer 1 L3contraSCL1L3-0.5
Spinal cord layer 7 L3contraSCL7L3-0.5
Spinal cord layer 8 L3contraSCL8L3-0.5
Lateral cervical nucleus L4contraLatCL4-0.5
Lateral spinal nucleus L4contraLSpL4-0.5
Spinal cord layer 5 L4contraSCL5L4-0.5
Spinal cord layer 3 L4contraSCL3L4-0.5
Spinal cord layer 4 L4contraSCL4L4-0.5
Spinal cord layer 1 L4contraSCL1L4-0.5
Spinal cord layer 7 L4contraSCL7L4-0.5
Spinal cord layer 8 L4contraSCL8L4-0.5
Lateral cervical nucleus L5contraLatCL5-0.5
Lateral spinal nucleus L5contraLSpL5-0.5
Spinal cord layer 5 L5contraSCL5L5-0.5
Spinal cord layer 3 L5contraSCL3L5-0.5
Spinal cord layer 4 L5contraSCL4L5-0.5
Spinal cord layer 1 L5contraSCL1L5-0.5
Spinal cord layer 7 L5contraSCL7L5-0.5
Spinal cord layer 8 L5contraSCL8L5-0.5
Lateral cervical nucleus L6contraLatCL6-0.5
Lateral spinal nucleus L6contraLSpL6-0.5
Spinal cord layer 5 L6contraSCL5L6-0.5
Spinal cord layer 3 L6contraSCL3L6-0.5
Spinal cord layer 4 L6contraSCL4L6-0.5
Spinal cord layer 1 L6contraSCL1L6-0.5
Spinal cord layer 7 L6contraSCL7L6-0.5
Spinal cord layer 8 L6contraSCL8L6-0.5
Lateral cervical nucleus S1contraLatCS1-0.5
Lateral spinal nucleus S1contraLSpS1-0.5
Spinal cord layer 5 S1contraSCL5S1-0.5
Spinal cord layer 3 S1contraSCL3S1-0.5
Spinal cord layer 4 S1contraSCL4S1-0.5
Spinal cord layer 1 S1contraSCL1S1-0.5
Spinal cord layer 7 S1contraSCL7S1-0.5
Spinal cord layer 8 S1contraSCL8S1-0.5
Lateral cervical nucleus S2contraLatCS2-0.5
Lateral spinal nucleus S2contraLSpS2-0.5
Spinal cord layer 5 S2contraSCL5S2-0.5
Spinal cord layer 3 S2contraSCL3S2-0.5
Spinal cord layer 4 S2contraSCL4S2-0.5
Spinal cord layer 1 S2contraSCL1S2-0.5
Spinal cord layer 7 S2contraSCL7S2-0.5
Spinal cord layer 8 S2contraSCL8S2-0.5
Lateral cervical nucleus S3contraLatCS3-0.5
Lateral spinal nucleus S3contraLSpS3-0.5
Spinal cord layer 5 S3contraSCL5S3-0.5
Spinal cord layer 3 S3contraSCL3S3-0.5
Spinal cord layer 4 S3contraSCL4S3-0.5
Spinal cord layer 1 S3contraSCL1S3-0.5
Spinal cord layer 7 S3contraSCL7S3-0.5
Spinal cord layer 8 S3contraSCL8S3-0.5
Lateral cervical nucleus S4contraLatCS4-0.5
Lateral spinal nucleus S4contraLSpS4-0.5
Spinal cord layer 5 S4contraSCL5S4-0.5
Spinal cord layer 3 S4contraSCL3S4-0.5
Spinal cord layer 4 S4contraSCL4S4-0.5
Spinal cord layer 1 S4contraSCL1S4-0.5
Spinal cord layer 7 S4contraSCL7S4-0.5
Spinal cord layer 8 S4contraSCL8S4-0.5
Lateral cervical nucleus Co1contraLatCCo1-0.5
Lateral spinal nucleus Co1contraLSpCo1-0.5
Lateral cervical nucleus Co2contraLatCCo2-0.5
Lateral spinal nucleus Co2contraLSpCo2-0.5
Lateral cervical nucleus Co3contraLatCCo3-0.5
Lateral spinal nucleus Co3contraLSpCo3-0.5
Central grayipsiCG-0.5
Optic nerve layer of the superior colliculusipsiOp1
Intermediate gray layer of the superior colliculusipsiInG3
Ventromedial margin of the stratum griseum intermediale of the superior colliculusipsiVMmSCi-0.5
Deep gray layer of the superior colliculusipsiDpG2
Substantia nigra compact partipsiSNC0
Substantia nigra reticular partipsiSNR0
Ventral tegmental area A10ipsiVTA1
Parabrachial pigmented nucleusipsiPBP-0.5
Paranigral nucleusipsiPN-0.5
Laterodorsal tegmental nucleusipsiLDTg3
Visual tegmental relay zoneipsiViTRZo2
Dorsolateral humpipsiCERcndl0
Anterior interposed nucleusipsiAIN0
Posterior interposed nucleusipsiCERpin0
Lateral cerebellar nucleusipsiCERL1
Medial cerebellar nucleusipsiMed1
Nucleus incertus pars dissipataipsiNId0.5
Medial pontine grayipsiMePG-0.5
Ventral pontine grayipsiVPG-0.5
Pontine nuclei ventromedial portion of the peripeduncular partipsiPnVMPP-0.5
Pontine nucleus ventral partipsiBPNv-0.5
Isthmic reticular formationipsiisRT-0.5
Mesencephalic reticular formationipsiMRF2
Pontine reticular nucleus oral partipsiPnO3
Mesencephalic trigeminal nucleusipsiMe5-0.5
Mesencephalic trigeminal nucleus caudal poleipsiMe5cp-0.5
Ophthalmic region of the trigeminal ganglionipsi5GnOP3
Spinal vestibular nucleusipsiSpVe3
Superior vestibular nucleusipsiSuVe3
Medial vestibular nucleusipsiMVe3
Lateral vestibular nucleusipsiLVe3
Inferior vestibular nucleusipsiIVN-0.5
Dorsal raphe nucleusipsiDR-0.5
Olivary pretectal nucleusipsiOPT-0.5
Caudal part of the paragigantocellular reticular nucleusipsiCPGi3
Medial preoptic nucleusipsiMPO2
Lateral hypothalamic areaipsiLH1
Lateral hypothalamic area perifornical partipsiPFx1
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM1
Posterior hypothalamic areaipsiPHA1
Zona incertaipsiZI2
Nucleus of the fields of ForelipsiF1
Dorsal part of the crus cerebriipsidcp-2
Medial terminal nucleus of the accessory optic tractipsiMT3
Ventral part of the medial terminal nucleus of the accessory optic tractipsiMTV0
Dorsal part of the medial terminal nucleus of the accessory optic tractipsiMTD2
Lateral entorhinal cortexipsiLEnt-0.5
Anterior cingulate cortexipsiACC0
Anterior cingulate cortex layer 5ipsiACCL52
Frontal cortex area 2ipsiFr21
Frontal cortex area 2 layer 5ipsiFr2L52
Frontal polar cortexipsiFP2.5
Agranular insular cortexipsiAI3
Agranular insular cortex dorsal partipsiAID2
Agranular insular cortex ventral partipsiAIV1
Agranular insular cortex ventral part jaw movement areaipsiAIVjm-0.5
Medial agranular prefrontal cortexipsiAGm-0.5
Medial agranular prefrontal cortex caudal partipsicAGm1.5
Medial agranular prefrontal cortex rostral partipsirAGm0
Orbital cortexipsiOrC2.5
Lateral orbital cortexipsiLO2
Lateral orbital cortex rostral partipsiLOr1
Nucleus of the posterior commissureipsiPCom0
Spinal cordipsiMES-0.5
CorneaipsiOrgsCorn-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





Homepage | Staff | neuroVIISAS | Rat connectome | Other connectomes | Neuroimaging | Neurodegeneration | Students | Links | Publications