University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Intermediate zone C1 left


Abbreviation
izVHC1
Color       
Superior regionsVentral horn C1

SynonymsAbbr.Language
Intermediate gray zone C1  
Reticular intermediate zone of the C1 segment Eng
Intermediate zone C1izVHC1Eng

SubregionsSide
Spinal cord layer 7 C1left
Spinal cord layer 8 C1left

Output to

NameSideAbbr.WeightDetails
Reticulotegmental nucleusipsiRETn-0.5
Pontine reticular nucleus oral partipsiPnO-0.5
Pontine reticular nucleus caudal partipsiPNC-0.5
Parabrachial nucleusipsiPB-0.5
Koelliker Fuse nucleusipsiKF-0.5
Caudomedial part of the lateral reticular nucleusipsiLRtcm3
Facial nucleusipsi7-0.5
Dorsal column nucleiipsiDCN2
Lateral hypothalamic areaipsiLH1.5
Medial division of the hypothalamusipsiMdH2
Dorsal hypothalamic areaipsiDA1.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM0.5
Paraventricular hypothalamic nucleusipsiPa0.5
Suprachiasmatic nucleusipsiSCh0.5
Supraoptic nucleus [Supraoptic region]ipsiSO0.5
Caudomedial part of the lateral reticular nucleuscontraLRtcm1
Facial nucleuscontra7-0.5
Lateral hypothalamic areacontraLH3
Medial division of the hypothalamuscontraMdH1
Dorsal hypothalamic areacontraDA3
Dorsomedial hypothalamic nucleus [Medial zone]contraDM3
Paraventricular hypothalamic nucleuscontraPa3
Suprachiasmatic nucleuscontraSCh3
Supraoptic nucleus [Supraoptic region]contraSO3
ThalamuscontraT-0.5
Anteroventral thalamic nucleuscontraAV-0.5
Centrolateral thalamic nucleuscontraCL-0.5
Lateral anterior nucleus of the dorsal thalamuscontraLAAT-0.5
Posterior thalamic nuclear group medial partcontraPoMe-0.5
Mediodorsal thalamic nucleuscontraMD-0.5
Ventral anterior-lateral complex of the thalamuscontraVAL-0.5
Ventrolateral thalamic nucleuscontraVL-0.5
Ventromedial thalamic nucleuscontraVM-0.5
Lateral funiculuscontralf-2
Orbicularis oculi muscleipsiMuscOrbOc-0.5

Input from

NameSideAbbr.WeightDetails
Locus coeruleusipsiLC3
Locus coeruleus caudal partipsiLCca-0.5
Locus coeruleus ventral partipsiLCv-0.5
Reticulotegmental nucleusipsiRETn-0.5
Reticular systemipsiRF-0.5
Pontine reticular nucleus oral partipsiPnO-0.5
Pontine reticular nucleus caudal partipsiPNC-0.5
Parabrachial nucleusipsiPB-0.5
Koelliker Fuse nucleusipsiKF-0.5
Boetzinger complexipsiBo-0.5
Spinal vestibular nucleusipsiSpVe3
Superior vestibular nucleusipsiSuVe3
Lateral vestibular nucleusipsiLVe3
Pontine raphe nucleusipsiPnR-0.5
Pontine raphe nucleus ventral partipsiPnRv-0.5
Raphe magnus nucleusipsiRMg-0.5
Raphe obscurus nucleusipsiROb-0.5
Raphe pallidus nucleusipsiRPa-0.5
Rostral ventral respiratory groupipsiRVRG-0.5
Locus coeruleuscontraLC2
Reticular systemcontraRF-0.5
Boetzinger complexcontraBo-0.5
Spinal vestibular nucleuscontraSpVe3
Superior vestibular nucleuscontraSuVe3
Lateral vestibular nucleuscontraLVe3
Pontine raphe nucleuscontraPnR-0.5
Pontine raphe nucleus ventral partcontraPnRv-0.5
Raphe magnus nucleuscontraRMg-0.5
Raphe obscurus nucleuscontraROb-0.5
Raphe pallidus nucleuscontraRPa-0.5
Rostral ventral respiratory groupcontraRVRG-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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