University of Rostock

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Rat connectome



Spinal cord layer 8 C1 left


Abbreviation
SCL8C1
Color       
Superior regionsIntermediate zone C1

SynonymsAbbr.Language
Spinal cord layer 8 C1SCL8C1Eng

Output to

NameSideAbbr.WeightDetails
Central gray mesencephalic part intercollicular levelipsiCGMint1
Lateral periaqueductal grayipsiLPAG1
Ventrolateral periaqueductal grayipsiVLPAG2
Posterior lobe of the cerebellumipsiCERCPL1
Anterior lobeipsiAnL3
Cerebellar lobule 4ipsiCERL41
Cerebellar lobule 5ipsiCERL51
Cerebellar lobule 7ipsiCERL71
Cerebellar lobule 7aipsiCERL7a1
Cerebellar lobule 7bipsiCERL7b1
Cerebellar lobule 8ipsiCERL81
Cerebellar lobule 9ipsiCERL91
Cerebellar lobule 6ipsiCERL61
Cerebellar lobule 6aipsiCERL6a1
Cerebellar lobule 6bipsiCERL6b1
Cerebellar lobule 6cipsiCERL6c1
Cerebellar lobule 6dipsiCERL6d1
Reticular systemipsiRF-0.5
Isthmic reticular formationipsiisRT1
Magnocellular reticular nucleusipsiNRMC-0.5
Medial pontomedullary reticular formationipsiMPomRF-0.5
Mesencephalic reticular formationipsiMRF1
Pontine reticular nucleus oral partipsiPnO1
Cuneiforme nucleusipsiCnF1.5
Parabrachial nucleusipsiPB1.5
Lateral parabrachial nucleus lateral partipsiLPBL1
Parabrachial nucleus central lateral partipsiPBCeL1
Parabrachial nucleus dorsolateral partipsiPBDL1
Parabrachial nucleus superior lateralipsiPBSL1
Gigantocellular reticular nucleusipsiGi1
Lateral reticular nucleusipsiLRt1
Subnucleus reticularis dorsalisipsiSRD3
Subnucleus reticularis ventralis medullae oblongataeipsiSRV-0.5
Medullary reticular nucleus dorsal partipsiMdDd-0.5
Facial nucleusipsi7-0.5
Spinal vestibular nucleusipsiSpVe-0.5
Vestibular nucleiipsiVnc1
Nucleus of the solitary tractipsiSol-0.5
Raphe pallidus nucleusipsiRPa1
Inferior olive dorsal nucleusipsiIOD1
Paragigantocellular reticular nucleusipsiPGi1
Lateral paragigantocellular nucleusipsiLPGi-0.5
Paragigantocellular reticular nucleus medial partipsiPGiM-0.5
HypothalamusipsiHYPO1
Lateral hypothalamic areaipsiLH-0.5
Posterior hypothalamic areaipsiPHA-0.5
Lateral group of the dorsal thalamusipsiLAT-0.5
Ventrobasal complexipsiVB1
Ventral posterolateral thalamic nucleusipsiVPL-0.5
Ventral posteromedial thalamic nucleusipsiVPM-0.5
Medial thalamic zoneipsiMTZ-0.5
Spinothalamic tractipsistt-2
Central amygdaloid nucleus anterior partipsiCeAn-0.5
Cervical segment 1ipsiCS12
Interneuron groups of layer 9 C1ipsiiGL9C1-0.5
Motoneuron groups of layer 9 C1ipsiMGL9C1-0.5
Cervical segment 2ipsiCS22
Cervical segment 3ipsiCS32
Cervical segment 4ipsiCS42
Intermediomedial cell column C4ipsiIMMC42
Cervical segment 5ipsiCS52
Cervical segment 6ipsiCS62
Cervical segment 7ipsiCS72
Spinal cord layer 9 C7ipsiSCL9C7-0.5
Cervical segment 8ipsiCS82
Thoracal segment 1ipsiT12
Thoracal segment 2ipsiT22
Spinal cord layers T2ipsiSCLT22
Thoracal segment 3ipsiT32
Thoracal segment 4ipsiT42
Thoracal segment 5ipsiT52
Thoracal segment 6ipsiT62
Thoracal segment 7ipsiT72
Thoracal segment 8ipsiT82
Thoracal segment 9ipsiT92
Thoracal segment 10ipsiT102
Thoracal segment 11ipsiT112
Thoracal segment 12ipsiT122
Thoracal segment 13ipsiT132
Lumbar segment 1ipsiL12
Intermediomedial cell column L1ipsiIMML12
Lumbar segment 2ipsiL22
Intermediomedial cell column L2ipsiIMML22
Lumbar segment 3ipsiL32
Intermediomedial cell column L3ipsiIMML32
Lumbar segment 4ipsiL42
Intermediomedial cell column L4ipsiIMML42
Area X L4ipsiSCL10L41
Spinal cord layer 8 L4ipsiSCL8L41
Lumbar segment 5ipsiL52
Intermediomedial cell column L5ipsiIMML52
Lumbar segment 6ipsiL62
Intermediomedial cell column L6ipsiIMML62
Sacral segment 1ipsiSa12
Sacral segment 2ipsiSa22
Sacral segment 3ipsiSa32
Sacral segment 4ipsiSa42
Central gray mesencephalic part intercollicular levelcontraCGMint3
Nucleus of DarkschewitschcontraDk-0.5
Oculomotor nucleuscontra3-0.5
Periaqueductal graycontraPAG-0.5
Lateral periaqueductal graycontraLPAG3
Ventrolateral periaqueductal graycontraVLPAG3
Intercollicular nucleuscontraInCo-0.5
Superior colliculuscontraSC-0.5
Superior colliculus intermediate layerscontraSCi-0.5
Superior colliculus deep layerscontraSCd-0.5
Edinger Westphal nucleuscontraEW-0.5
Interstitial nucleus of CajalcontraInC-0.5
Anterior lobecontraAnL1
Cerebellar lobule 4contraCERL41.5
Cerebellar lobule 5contraCERL51.5
Cerebellar lobule 7contraCERL71.5
Cerebellar lobule 7acontraCERL7a1.5
Cerebellar lobule 7bcontraCERL7b1.5
Cerebellar lobule 8contraCERL81.5
Cerebellar lobule 9contraCERL91.5
Cerebellar lobule 6contraCERL61.5
Cerebellar lobule 6acontraCERL6a1.5
Cerebellar lobule 6bcontraCERL6b1.5
Cerebellar lobule 6ccontraCERL6c1.5
Cerebellar lobule 6dcontraCERL6d1.5
Magnocellular reticular nucleuscontraNRMC-0.5
Mesencephalic reticular formationcontraMRF-0.5
Pontine reticular nucleus oral partcontraPnO3
Cuneiforme nucleuscontraCnF2
Parabrachial nucleuscontraPB2
Lateral parabrachial nucleus lateral partcontraLPBL2
Parabrachial nucleus central lateral partcontraPBCeL1.5
Parabrachial nucleus dorsolateral partcontraPBDL1.5
Parabrachial nucleus superior lateralcontraPBSL1.5
Gigantocellular reticular nucleuscontraGi3
Gigantocellular reticular nucleus lateral partcontraGirL3
Lateral reticular nucleuscontraLRt3
Caudal part to the midportion of the lateral reticular nucleuscontraCaLRtMp0.5
Caudomedial part of the lateral reticular nucleuscontraLRtcm-0.5
Caudal third of the caudomedial part of the lateral reticular nucleuscontraLRtcmCt0.5
Lateral reticular nucleus rostral partcontraLRtr2
Subnucleus reticularis ventralis medullae oblongataecontraSRV-0.5
Facial nucleuscontra7-0.5
Spinal vestibular nucleuscontraSpVe-0.5
Vestibular nucleicontraVnc3
Medial vestibular nucleus caudal partcontraMVeP-0.5
Medial vestibular nucleus magnocellular partcontraMVeMC-0.5
Medial vestibular nucleus parvicellular partcontraMVePC-0.5
Lateral vestibular nucleuscontraLVe-0.5
Raphe pallidus nucleuscontraRPa1
Inferior olive dorsal nucleuscontraIOD3
Paragigantocellular reticular nucleuscontraPGi3
Lateral paragigantocellular nucleuscontraLPGi-0.5
Paragigantocellular reticular nucleus medial partcontraPGiM-0.5
HypothalamuscontraHYPO3
Centrolateral thalamic nucleuscontraCL-0.5
Lateral group of the dorsal thalamuscontraLAT1.5
Posterior thalamic nuclear groupcontraPo-0.5
Submedius thalamic nucleuscontraSub1
Ventrobasal complexcontraVB-0.5
Ventral posterolateral thalamic nucleuscontraVPL-0.5
Ventral posteromedial thalamic nucleuscontraVPM-0.5
Intralaminar nucleicontraILN-0.5
Medial thalamic zonecontraMTZ-0.5
Pretectal regioncontraPRT-0.5
Lateral funiculuscontralf-2
Spinothalamic tractcontrastt-2
Ventral funiculuscontravf-2
Ventrolateral funiculuscontravLF-2
Cervical segment 1contraCS11.5
Cervical segment 2contraCS21.5
Cervical segment 3contraCS31.5
Cervical segment 4contraCS41.5
Cervical segment 5contraCS51.5
Intermediomedial cell column C5contraIMMC51
Cervical segment 6contraCS61.5
Cervical segment 7contraCS71.5
Spinal cord layer 9 C7contraSCL9C7-0.5
Cervical segment 8contraCS81.5
Thoracal segment 1contraT11.5
Thoracal segment 2contraT21.5
Spinal cord layers T2contraSCLT23
Thoracal segment 3contraT31.5
Thoracal segment 4contraT41.5
Thoracal segment 5contraT51.5
Thoracal segment 6contraT61.5
Thoracal segment 7contraT71.5
Thoracal segment 8contraT81.5
Thoracal segment 9contraT91.5
Thoracal segment 10contraT101.5
Thoracal segment 11contraT111.5
Thoracal segment 12contraT121.5
Thoracal segment 13contraT131.5
Lumbar segment 1contraL11.5
Lumbar segment 2contraL21.5
Lumbar segment 3contraL31.5
Lumbar segment 4contraL41.5
Area X L4contraSCL10L41
Spinal cord layer 8 L4contraSCL8L41
Lumbar segment 5contraL51.5
Lumbar segment 6contraL61.5
Sacral segment 1contraSa11.5
Sacral segment 2contraSa21.5
Sacral segment 3contraSa31.5
Sacral segment 4contraSa41.5

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
Laterodorsal tegmental nucleusipsiLDTg-0.5
A5 noradrenaline cellsipsiA52
Locus coeruleusipsiLC3
Caudal part of ventral locus coeruleusipsiLCveca3
Magnocellular reticular nucleusipsiNRMC-0.5
Medial reticular formationipsiRFm-0.5
Ventrolateral reticular formationipsiVLRF-0.5
Mesencephalic reticular formationipsiMRF-0.5
Pontine reticular nucleusipsiPRN3
Dorsolateral pontine reticular formationipsiPRNDL1
Pontine reticular nucleus oral partipsiPnO1
Pontine reticular nucleus caudal partipsiPNC3
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi3
Gigantocellular reticular nucleus medial partipsiGiM-0.5
Gigantocellular reticular nucleus rostral partipsiGiRo-0.5
Subcoeruleus nucleusipsiSubC3
Spinal vestibular nucleusipsiSpVe-0.5
Medial vestibular nucleusipsiMVe-0.5
Lateral vestibular nucleusipsiLVe-0.5
Nucleus of the solitary tract rapidly adapting pulmonary stretch receptor second order neuronsipsiRAR-0.5
Raphe magnus nucleusipsiRMg-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm1
Lateral hypothalamic areaipsiLH1
Paraventricular hypothalamic nucleusipsiPa0.5
Zona incerta rostromedial partipsiZIrm0
Lateral agranular prefrontal cortexipsiAGl1
Medial agranular prefrontal cortexipsiAGm1
Primary somatosensory cortexipsiS11
Secondary somatosensory cortexipsiS21
Superior colliculuscontraSC-0.5
Superior colliculus lateral partcontraSCL-0.5
Superior colliculus intermediate layerscontraSCi-0.5
Intermediate gray layer of the superior colliculuscontraInG-0.5
Superior colliculus deep layerscontraSCd-0.5
Locus coeruleuscontraLC2
Caudal part of ventral locus coeruleuscontraLCveca0.5
Magnocellular reticular nucleuscontraNRMC-0.5
Medial reticular formationcontraRFm-0.5
Mesencephalic reticular formationcontraMRF-0.5
Pontine reticular nucleus oral partcontraPnO0.5
Pontine reticular nucleus caudal partcontraPNC1
Gigantocellular reticular nucleuscontraGi1
Gigantocellular reticular nucleus medial partcontraGiM-0.5
Spinal vestibular nucleuscontraSpVe-0.5
Medial vestibular nucleuscontraMVe-0.5
Forelimb motor cortexcontraFMCx3
Primary somatosensory cortexcontraS11
Sternomastoid nerveipsismn1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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