University of Rostock

Department of Anatomy

Neuroscience Group

  Homepage

 Staff

 neuroVIISAS

 Rat connectome

 Other connectomes

 Neuroimaging

 Neurodegeneration

 Neuroproteomics

 Students

 Links

 Publications

Rat connectome



Spinal trigeminal nucleus right


Abbreviation
Sp5nc
Color       
Superior regionsTrigeminal sensory nuclear complex

SynonymsAbbr.Language
 SPV 
Spinal nucleus of the trigeminal nerve  
Nucleus of the spinal tract of the trigeminus Eng
Descending nucleus of the trigeminal nerve Eng
Spinal nucleus of trigeminal nerve Eng
Nucleus tractus spinalis nervi trigemini  
Subdivisions of the spinal trigeminal complex Eng
Principal spinal trigeminal nucleus Eng
Spinal nuclei of the trigeminus Eng
Spinal trigeminal nucleusSp5ncEng
Nucleus of the spinal tract of the trigeminal nerve Eng
Spinal trigeminal complex Eng
Spinal sensory trigeminal nucleus Eng
Spinal trigeminal nucleus complex Eng
Spinal nucleus of nerve 5 Eng
Spinal trigeminal nucleusSp5Eng

SubregionsSide
Dorsomedial part of the spinal trigeminal nucleusright
Interpositus spinal trigeminal nucleusright
Interstitial system of the spinal trigeminal tractright
Junction of the caudal part of the spinal trigeminal nucleus and the interpolar part of the spinal trigeminal nucleusright
Lateral to the border of the spinal trigeminal nucleusright
Rostral part of the spinal trigeminal nucleus oral partright
Spinal trigeminal nucleus caudal partright
Spinal trigeminal nucleus dorsal partright
Spinal trigeminal nucleus dorsolateral partright
Spinal trigeminal nucleus intermediate partright
Spinal trigeminal nucleus interpolar oral transition zoneright
Spinal trigeminal nucleus interpolar partright
Spinal trigeminal nucleus lateral partright
Spinal trigeminal nucleus layersright
Spinal trigeminal nucleus medial partright
Spinal trigeminal nucleus oral partright
Spinal trigeminal nucleus rostral partright
Spinal trigeminal nucleus ventral partright
Spinal trigeminal nucleus ventrolateral partright
Spinal trigeminal tractright
Spinal trigeminal nucleus motor divisionright
Border between spinal trigeminal nucleus interpolar part and pons oral partright
Intercalated spinal trigeminal nucleusright
Border between spinal trigeminal nucleus caudal part and the spinal cord cervical segement C1right
Trigeminal interpolaris caudalis transition zoneright
Spinal trigeminal nucleus posterior partright
Pars zonale of the spinal trigeminal nucleusright
Subnucleus caudalis contiguous with the upper cervical dorsal hornright
Spinal trigeminal nucleus B1 barrelettright
Spinal trigeminal nucleus B2 barrelettright
Rostral transition zone with the spinal trigeminal nucleus interpolaris of the ventrolateral Sp5Cright
Caudal transition zone with the cervical spinal cord of the ventrolateral Sp5Cright
Spinal trigeminal nucleus ventromedial portionright
Spinal trigeminal nucleus dorsoventral partright

Output to

NameSideAbbr.WeightDetails
Medial pontine nucleuscontraMPoN-0.5
Ventral lateral pontine graycontraVLPG-0.5
Inferior colliculuscontraICOL1
External cortex of the inferior colliculuscontraECIC2
Inferior colliculus rostral partcontraICOLR2
Superior colliculuscontraSC2
Superior colliculus lateral partcontraSCL2
Optic nerve layer of the superior colliculuscontraOp3
Superior colliculus intermediate layerscontraSCi1
Intermediate gray layer of the superior colliculuscontraInG3
Intermediate white layer of the superior colliculuscontraInWh3
Deep gray layer of the superior colliculuscontraDpG3
Superior colliculus medial partcontramSC1
Midbrain extrapyramidal areacontraMEA0
Ventral peduncular pontine nucleuscontraVPPn-0.5
Ventrolateral tegmental areacontraVLTg3
Lateral tegmental areacontraLTGA3
Pedunculopontine tegmental nucleuscontraPPTg0.5
Simple lobulecontraSim1
Lateral cerebellar nucleuscontraCERL0
Dorsolateral ponscontraDoLaP-0.5
Pontine sublaterodorsal nucleuscontraPsLdn1
Pontine tegmental fieldcontraPTF2
Reticulotegmental nucleus of the ponscontraRtTg-0.5
Pontine nucleicontraPn0
Prepositus nucleuscontraPr0.5
Reticular systemcontraRF-0.5
Parabrachial nucleuscontraPB1
Lateral parabrachial nucleuscontraLPB0.5
Lateral parabrachial nucleus caudal partcontraLPBcp0.5
Lateral parabrachial nucleus central partcontraLPBC0.5
Lateral parabrachial nucleus external partcontraLPBE0.5
Gigantocellular reticular nucleuscontraGi1
Medullary reticular nucleus dorsal partcontraMdDd2
Parvicellular reticular nucleuscontraPCRt1
Facial nucleuscontra71
Facial nucleus dorsolateral subnucleuscontra7DL1
Facial nucleus lateral subnucleuscontra7L1
Facial nucleus medial partcontra7M0
Facial nucleus ventral partcontra7V0
Facial nucleus dorsal intermediate subnucleuscontra7DI0
Hypoglossal nucleuscontra12S-0.5
Paratrigeminal nucleuscontraPa50
Supratrigeminal nucleuscontraSu52
Mesencephalic trigeminal nucleuscontraMe50
Motor trigeminal nucleuscontraMo50.5
Trigeminal subnucleus caudaliscontra5SSC0.5
Cochlear nucleuscontraCON-0.5
Medial vestibular nucleuscontraMVe1
Raphe pallidus nucleuscontraRPa3
Ventral lateral medulla oblongatacontraMVL1
Cuneate nucleuscontraCu3
Inferior olivecontraIO3
Rostromedial in middle third of the inferior olive medial nucleuscontraIOMmtRM-0.5
Dorsal tip of the ventral lamella of the inferior olive principal nucleuscontraIOPrvlD1
Rostral ventral respiratory groupcontraRVRG1
Lateral hypothalamic areacontraLH0
Posterior hypothalamic nucleuscontraPH0.5
A8 dopamine cells retrorubral groupcontraRRF1
ThalamuscontraT-0.5
Parafascicular thalamic nucleuscontraPF-0.5
Posterior thalamic nuclear groupcontraPo2
Submedius thalamic nucleuscontraSub1
Submedius thalamic nucleus ventral partcontraSubV0
Ventrolateral thalamic nucleuscontraVL1
Ventral posterior thalamic nucleus parvicellular partcontraVPPC0
Ventrobasal complexcontraVB3
Ventral posterolateral thalamic nucleuscontraVPL1
Ventral posterolateral thalamic nucleus caudal partcontraVPLca2
Ventral posterolateral thalamic nucleus central partcontraVPLc2
Ventral posteromedial thalamic nucleuscontraVPM3
Ventral posteromedial thalamic nucleus rostrolateral partcontraVPMrL2
Ventral posteromedial thalamic nucleus ventromedial partcontraVPMVM3
Ventral posteromedial thalamic nucleus caudo-ventromedial partcontraVPMcVM-0.5
Ventral posteromedial thalamic nucleus corecontraVPMc2.5
Ventral posteromedial thalamic nucleus core lingualcontraVPMcL1
Ventral posteromedial thalamic nucleus core infraorbitalcontraVPMci3
Ventral posteromedial thalamic nucleus caudo-ventromedial edgecontraVPMcvm2.5
Posterior intralaminar thalamic nucleuscontraPIL-0.5
Laterodorsal thalamic nucleuscontraLD2
Posterior groupcontraPTG3
Posteromedian thalamic nucleuscontraPoMn-0.5
Reticular thalamic nucleuscontraRt2
Zona incertacontraZI1
Pretectal regioncontraPRT-0.5
Medial lemniscuscontraml-2
Cisterna cerebellomedullariscontraCistcm-3
Intermediolateral cell columncontraIML-0.5
Phrenic motoneurons of lamina 9 C3contraPh9C30.5
Phrenic motoneurons of lamina 9 C4contraPh9C40.5
Phrenic motoneurons of lamina 9 C5contraPh9C50.5
Cervical segment 7contraCS7-1
Medial paralemniscal nucleusipsiMPL1
Periaqueductal grayipsiPAG3
Inferior colliculusipsiICOL-0.5
Central nucleus of the inferior colliculusipsiCIC0
External cortex of the inferior colliculusipsiECIC3
Inferior colliculus rostral partipsiICOLR1
Pericentral nucleus inferior colliculusipsiICOLp0
Superior colliculusipsiSC-0.5
Superior colliculus lateral partipsiSCL1
Intermediate gray layer of the superior colliculusipsiInG0
Superior colliculus medial partipsimSC0
Central tegmental field lateral partipsiTGACL3
Midbrain extrapyramidal areaipsiMEA0.5
Ventrolateral tegmental areaipsiVLTg1
Lateral tegmental areaipsiLTGA2
Pedunculopontine tegmental nucleusipsiPPTg0.5
Paraflocculus ventral partipsiPFlv1
Posterior lobe of the cerebellumipsiCERCPL1
Ansiform lobule crus 2aipsiCrus2a-0.5
Anterior lobeipsiAnL1
Cerebellar lobule 5 zone BipsiCERL5B0
Cerebellar lobule 6a zone AipsiCERL6aA3
Cerebellar lobule 6a zone BipsiCERL6aB3
Cerebellar lobule 6a zone XipsiCERL6aX3
Cerebellar lobule 6a zone C1ipsiCERL6aC13
Cerebellar lobule 6a zone C2ipsiCERL6aC23
Cerebellar lobule 6a zone C3ipsiCERL6aC33
Cerebellar lobule 6b zone AipsiCERL6bA3
Cerebellar lobule 6b zone BipsiCERL6bB3
Cerebellar lobule 6b zone C1ipsiCERL6bC13
Cerebellar lobule 6b zone C2ipsiCERL6bC23
Cerebellar lobule 6b zone C3ipsiCERL6bC33
Cerebellar lobule 6b zone XipsiCERL6bX3
Cerebellar lobule 6c zone AipsiCERL6cA3
Cerebellar lobule 6c zone BipsiCERL6cB3
Cerebellar lobule 6c zone C1ipsiCERL6cC13
Cerebellar lobule 6c zone C2ipsiCERL6cC23
Cerebellar lobule 6c zone C3ipsiCERL6cC33
Cerebellar lobule 6c zone XipsiCERL6cX3
Cerebellar lobule 6d zone AipsiCERL6dA3
Cerebellar lobule 6d zone BipsiCERL6dB3
Cerebellar lobule 6d zone XipsiCERL6dX3
Lateral cerebellar nucleusipsiCERL1
FlocculusipsiFl1
Superior cerebellar peduncleipsisucep3
A7 noradrenaline cellsipsiA7-0.5
Dorsolateral ponsipsiDoLaP-0.5
Locus coeruleusipsiLC1
Pontine sublaterodorsal nucleusipsiPsLdn1
Pontine tegmental fieldipsiPTF1
Pontine nucleiipsiPn0.5
Prepositus nucleusipsiPr0.5
Reticular systemipsiRF-0.5
Caudoventrolateral reticular nucleusipsiCVLR-0.5
Rostroventrolateral reticular nucleusipsiRVL-0.5
Parabrachial nucleusipsiPB3
Koelliker Fuse nucleusipsiKF3
Lateral parabrachial nucleusipsiLPB3
Lateral parabrachial nucleus caudal partipsiLPBcp1
Lateral parabrachial nucleus central partipsiLPBC0.5
Lateral parabrachial nucleus external partipsiLPBE1
Dorsal lateral parabrachial nucleusipsiPBDoL3
Parabrachial nucleus ventral partipsiPBV3
Lateral reticular nucleusipsiLRt-0.5
Lateral reticular nucleus lateral partipsiLRtL-0.5
Medullary reticular nucleusipsiMdD0
Medullary reticular nucleus dorsal partipsiMdDd4
Parvicellular reticular nucleusipsiPCRt2
Dorsal parvocellular reticular formationipsiDPCRt-2
Ambiguus nucleusipsiAmb-0.5
Facial nucleusipsi73
Facial nucleus dorsolateral subnucleusipsi7DL3
Facial nucleus lateral subnucleusipsi7L2
Facial nucleus medial partipsi7M2
Facial nucleus ventral partipsi7V1
Facial nucleus dorsal intermediate subnucleusipsi7DI2
Glossopharyngeal nerveipsi9n-0.5
Hypoglossal nucleusipsi12S-0.5
Dorsal part of the hypoglossal nucleusipsi12SD-0.5
Intertrigeminal nucleusipsiI5-0.5
Apneic region of the intertrigeminal nucleusipsiI5ap-0.5
Supratrigeminal nucleusipsiSu53
Trigeminal nucleusipsi5-0.5
Mesencephalic trigeminal nucleusipsiMe50
Motor trigeminal nucleusipsiMo51
Principal sensory trigeminal nucleusipsiPr53
Spinal trigeminal tractipsisp53
Trigeminal subnucleus caudalisipsi5SSC1
Cochlear nucleusipsiCON-0.5
Nucleus of the solitary tractipsiSol-0.5
Nucleus of the solitary tract caudal partipsiSolca-0.5
Dorsal motor nucleus of vagusipsi10-0.5
Dorsal raphe nucleusipsiDR1
Raphe magnus nucleusipsiRMg0
Raphe pallidus nucleusipsiRPa3
Ventral lateral medulla oblongataipsiMVL3
Cuneate nucleusipsiCu3
Olivary nucleusipsiON1
Inferior oliveipsiIO0.5
Retrotrapezoid nucleusipsiRTN2
Rostral ventral respiratory groupipsiRVRG3
Choroidea innervating part of the superior salivatory nucleusipsiCSSN1
HypothalamusipsiHYPO0
Lateral hypothalamic areaipsiLH0
Posterolateral hypothalamusipsiPLHY-1
Posterior hypothalamic nucleusipsiPH2
Paraventricular hypothalamic nucleusipsiPa0
Supraoptic nucleus [Supraoptic region]ipsiSO0
A8 dopamine cells retrorubral groupipsiRRF0
ThalamusipsiT-0.5
Central medial thalamic nucleusipsiCM-0.5
Centrolateral thalamic nucleusipsiCL1
Parafascicular thalamic nucleus lateral partipsiPFL-0.5
Posterior thalamic nuclear groupipsiPo1
Suprageniculate thalamic nucleusipsiSG-0.5
Mediodorsal thalamic nucleus lateral partipsiMDL-10
Submedius thalamic nucleusipsiSub2
Submedius thalamic nucleus dorsal partipsiSubD-0.5
Submedius thalamic nucleus ventral partipsiSubV0
Ventral posterior thalamic nucleus parvicellular partipsiVPPC-0.5
Ventral posterolateral thalamic nucleus central partipsiVPLc1
Ventral posteromedial thalamic nucleusipsiVPM3
Ventral posteromedial thalamic nucleus rostrolateral partipsiVPMrL1
Ventral posteromedial thalamic nucleus caudo-ventromedial edgeipsiVPMcvm3
Posterior intralaminar thalamic nucleusipsiPIL-0.5
Lateral posterior thalamic nucleus laterorostral partipsiLPLR-0.5
Lateral posterior thalamic nucleus mediorostral partipsiLPMR-0.5
Posterior groupipsiPTG3
Posteromedian thalamic nucleusipsiPoMn-0.5
Ventral thalamusipsiVNT-0.5
Reticular thalamic nucleusipsiRt1
Zona incerta caudal partipsiZIC1
Zona incerta ventral partipsiZIV-0.5
Zona incerta ventral part medial partipsiZIvm-0.5
Cisterna cerebellomedullarisipsiCistcm-3
Subthalamic nucleusipsiSTh3
Agranular insular cortex rostral partipsiRAIC-3
Medial geniculate nucleusipsiMG-0.5
Medial geniculate nucleus medial partipsiMGM-0.5
Intermediolateral cell columnipsiIML-0.5
Cervical segment 1ipsiCS1-0.5
Cervical segment 2ipsiCS2-0.5
Cervical segment 3ipsiCS3-0.5
Phrenic motoneurons of lamina 9 C3ipsiPh9C31
Cervical segment 4ipsiCS4-0.5
Phrenic motoneurons of lamina 9 C4ipsiPh9C41
Cervical segment 5ipsiCS5-0.5
Phrenic motoneurons of lamina 9 C5ipsiPh9C51
Cervical segment 6ipsiCS6-0.5
Cervical segment 7ipsiCS7-0.5
Cervical segment 8ipsiCS8-0.5
Thoracal segment 10ipsiT102
Lumbar enlargementipsiLSegE-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL51
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL61
Infraorbital nerveipsiiobn-2
Orbicularis oculi musclecontraMuscOrbOc-0.5
Vitreous humor of eyeipsiOrgVHEye0.5
DiaphragmaipsiMuscDia-10
Orbicularis oculi muscleipsiMuscOrbOc-0.5
Genioglossus muscleipsiMuscGenioG-0.5
Musculus masseteripsiMuscMass1

Input from

NameSideAbbr.WeightDetails
Periaqueductal graycontraPAG0.5
Dorsal periaqueductal gray caudal partcontraDPAGC0
Dorsolateral periaqueductal gray caudal partcontraPAGdlc0.5
Dorsolateral periaqueductal gray rostral partcontraPAGdlr0
Ventrolateral periaqueductal gray caudal partcontraPAGvlc0
Ventrolateral periaqueductal gray rostral partcontraPAGvlr0.5
Red nucleus dorsalcontraRDO1
Deep gray layer of the superior colliculuscontraDpG-0.5
Midbrain extrapyramidal areacontraMEA2
Substantia nigra reticular partcontraSNR0.5
Laterodorsal tegmental nucleuscontraLDTg-0.5
Pedunculopontine tegmental nucleuscontraPPTg2
Prepositus nucleuscontraPr1.5
Ventral reticular formationcontraVRF-0.5
Parabrachial nucleuscontraPB3
Parabrachial nucleus medialcontraPBnMe-0.5
Gigantocellular reticular nucleuscontraGi3
Gigantocellular reticular nucleus alpha partcontraGiA-0.5
Medullary reticular nucleus dorsal partcontraMdDd2
Subcoeruleus nucleuscontraSubC2
Paratrigeminal nucleus lateral partcontraPa5L1
Supratrigeminal nucleuscontraSu52
Spinal vestibular nucleuscontraSpVe2
Vestibular nucleicontraVnc2
Medial vestibular nucleus parvicellular partcontraMVePC1
Nucleus of the solitary tractcontraSol1
Nucleus of the solitary tract commissural partcontraSolC2
Raphe magnus nucleuscontraRMg-0.5
Cuneate nucleuscontraCu0.5
External cuneate nucleuscontraECu-0.5
Inferior olivecontraIO-0.5
Paragigantocellular reticular nucleuscontraPGi-0.5
Rostral ventral respiratory groupcontraRVRG0.5
Dorsomedial hypothalamic nucleuscontraDMHy0
Perifornical hypothalamic area [Preoptic anterior region]contraPFxPAR0
Lateral hypothalamic area dorsal partcontraLHd0
Lateral hypothalamic area ventral partcontraLHAvp-0.5
Dorsomedial hypothalamic nucleus [Medial zone]contraDM0
Posterior hypothalamic nucleus caudal partcontraPHCa0
Posterior hypothalamic nucleus rostral partcontraPHRo0
Periventricular zonecontraPVZ0
Paraventricular hypothalamic nucleuscontraPa2
A8 dopamine cells retrorubral groupcontraRRF2
Medial part of the caudal perifornical areacontraPeFCM0
Lateral part of the caudal perifornical areacontraPeFCL-0.5
Posterior thalamic nuclear groupcontraPo-0.5
Cerebral peduncle basal partcontracp-2
Parietal cortex area 1contraPar1-0.5
Insular cortexcontraICX3
Motoric regionscontraM3
Sensory regionscontraSR3
Primary somatosensory cortexcontraS12
Posteromedial barrel subfieldcontraPMBSF3
Primary somatosensory cortex layer 5contraS1L5-0.5
Secondary somatosensory cortex layer 5bcontraS2L5b3
Somatosensory cortex layer 5bcontraSRL5b3
Cervical segmentscontraCSeg-0.5
Cervical segment 6contraCS61
Cervical segment 7contraCS71
Cervical segment 8contraCS81
Spinal cord layer 1 L1contraSCL1L1-0.5
Spinal cord layer 1 L2contraSCL1L2-0.5
Spinal cord layer 1 L3contraSCL1L32
Spinal cord layer 3 L4contraSCL3L42
Spinal cord layer 4 L4contraSCL4L42
Spinal cord layer 1 L4contraSCL1L4-0.5
Spinal cord layer 1 L5contraSCL1L5-0.5
Lumbar segment 6contraL61
Spinal cord layer 1 L6contraSCL1L6-0.5
Sacral segment 1contraSa11
Sacral segment 2contraSa21
Medial paralemniscal nucleusipsiMPL1
Periaqueductal grayipsiPAG3
Dorsal periaqueductal gray caudal partipsiDPAGC0
Dorsolateral periaqueductal grayipsiDLPAG0.5
Dorsolateral periaqueductal gray caudal partipsiPAGdlc0
Dorsolateral periaqueductal gray rostral partipsiPAGdlr0
Periaqueductal gray dorsal partipsiPAGd0.5
Periaqueductal gray medial partipsiPAGm0.5
Ventrolateral periaqueductal grayipsiVLPAG2
Ventrolateral periaqueductal gray caudal partipsiPAGvlc0
Ventrolateral periaqueductal gray rostral partipsiPAGvlr0
Red nucleusipsiR-0.5
Red nucleus dorsalipsiRDO0.5
Midbrain extrapyramidal areaipsiMEA3
Substantia nigra compact partipsiSNC0
Substantia nigra lateral partipsiSNL0
Substantia nigra reticular partipsiSNR1
Peripeduncular nucleusipsiPP0
Laterodorsal tegmental nucleusipsiLDTg-0.5
Pedunculopontine tegmental nucleusipsiPPTg3
Edinger Westphal nucleusipsiEW3
Deep cerebellar nucleiipsiDNC1
Locus coeruleusipsiLC-0.5
Medial parapyramidal nucleusipsiPPym1
Lateral parapyramidal nucleusipsiPPyL0
Pons caudal partipsiPca-0.5
Pons oral partipsiPor-0.5
Prepositus nucleusipsiPr2
Ventral reticular formationipsiVRF3
Deep mesencephalic nucleusipsiDpMe2
Pontine reticular nucleus oral partipsiPnO2.5
Parabrachial nucleusipsiPB4
Central medial parabrachial nucleus waistipsiCMPBw-1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleus ventral partipsiLPBV-1
Lateral edge of the central lateral parabrachial nucleusipsiPBCeLe2
Medial part of the central lateral parabrachial nucleusipsiPBCeLM-0.5
Parabrachial nucleus dorsal partipsiPBD2
Rostral edge at the dorsal lateral parabrachial nucleusipsiPBDoLRe-0.5
Parabrachial nucleus external divison lateral partipsiPBeDL2
Parabrachial nucleus medialipsiPBnMe-0.5
Medial parabrachial nucleus external partipsiMPBE2
Parabrachial nucleus ventrolateral partipsiPBveLa-0.5
Gigantocellular reticular nucleusipsiGi3
Gigantocellular reticular nucleus alpha partipsiGiA3
Subnucleus reticularis dorsalisipsiSRD-0.5
Medial medullary reticular nucleusipsiMMdD1
Medullary reticular nucleus dorsal partipsiMdDd3
Parvicellular reticular nucleusipsiPCRt2
Subcoeruleus nucleusipsiSubC3
Glossopharyngeal nerveipsi9n-0.5
Inferior glossopharyngeal ganglionipsi9Sigp2.5
Apneic region of the intertrigeminal nucleusipsiI5ap0.5
Paratrigeminal nucleusipsiPa54
Paratrigeminal nucleus lateral partipsiPa5L1
Supratrigeminal nucleusipsiSu53
Mesencephalic trigeminal nucleusipsiMe51
Principal sensory trigeminal nucleusipsiPr51
Principal sensory trigeminal nucleus dorsal partipsiPr5D2
Caudal part of the spinal trigeminal nucleus caudal part layer 1ipsiSp5CCL1-0.5
Caudal part of the spinal trigeminal nucleus caudal part layer 5ipsiSp5CCL5-0.5
Spinal trigeminal nucleus interpolar partipsiSp5I0.5
Dorsal part of spinal trigeminal nucleus oral partipsiSp5OD-0.5
Sensory root of the trigeminal nerveipsiS5-0.5
Trigeminal ganglionipsi5Gn-0.5
Spinal vestibular nucleusipsiSpVe3
Vestibular nucleiipsiVnc3
Superior vestibular nucleusipsiSuVe3
Medial vestibular nucleusipsiMVe3
Medial vestibular nucleus parvicellular partipsiMVePC1
Lateral vestibular nucleusipsiLVe1
Nucleus of the solitary tractipsiSol4
Nucleus of the solitary tract caudal partipsiSolca0
Caudal nucleus of the solitary tract medial partipsiSolcame1
Raphe nucleiipsiRAN1
Dorsal raphe nucleusipsiDR2.5
Dorsal raphe nucleus lateral wingipsiDRlw3
Dorsal raphe nucleus rostral partipsiDRr-0.5
Median raphe nucleusipsiMnR2.5
Superior central raphe nucleusipsiCS-0.5
Pontine raphe nucleusipsiPnR1
Raphe magnus nucleusipsiRMg3
Raphe magnus nucleus caudal partipsiRMgc1
Raphe obscurus nucleusipsiROb2
Raphe obscurus nucleus rostral partipsiRObr1
Raphe pallidus nucleusipsiRPa2
Rostral ventrolateral medullaipsiRVLM1
Cuneate nucleusipsiCu1
External cuneate nucleusipsiECu1
Inferior oliveipsiIO0
Paragigantocellular reticular nucleusipsiPGi1
Dorsal paragigantocellular nucleusipsiDPGi1
Caudal part of the dorsal paragigantocellular nucleusipsiDPGiC-0.5
Rostral ventral respiratory groupipsiRVRG1
Rostral part of the ventromedial medulla oblongataipsiRMeObvm3
Dorsomedial hypothalamic nucleusipsiDMHy0
Perifornical hypothalamic area [Preoptic anterior region]ipsiPFxPAR0
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area dorsal partipsiLHd0
Lateral hypothalamic area perifornical partipsiPFx3
Lateral hypothalamic area ventral partipsiLHAvp0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM3
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM3
Posterior hypothalamic areaipsiPHA1
Posterior hypothalamic nucleus caudal partipsiPHCa0
Posterior hypothalamic nucleus rostral partipsiPHRo0
Periventricular zoneipsiPVZ0
Paraventricular hypothalamic nucleusipsiPa4
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag1
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo1
A8 dopamine cells retrorubral groupipsiRRF3
Medial part of the caudal perifornical areaipsiPeFCM0
Lateral part of the caudal perifornical areaipsiPeFCL0.5
Dorsal funiculusipsidfu3
Central amygdaloid nucleusipsiCe1
Subthalamic nucleusipsiSTh1
Parasubthalamic nucleusipsiPSTh3
Insular cortexipsiICX2
Granular insular cortexipsiGI2
Motoric regionsipsiM-0.5
Lateral prefrontal cortexipsilPFC2
Lateral agranular prefrontal cortexipsiAGl3
Sensory regionsipsiSR2
Posteromedial barrel subfieldipsiPMBSF1
Primary somatosensory cortex layersipsiS1L3
Secondary somatosensory cortex layer 5bipsiS2L5b1
Somatosensory cortex layer 5bipsiSRL5b1
Cervical segment 1ipsiCS11
Deep dorsal horn C1ipsiDDHC13
Superficial dorsal horn C1ipsiSDHC13
Cervical segment 2ipsiCS21
Cervical segment 3ipsiCS31
Cervical segment 4ipsiCS41
Cervical segment 5ipsiCS51
Cervical segment 6ipsiCS61
Cervical segment 7ipsiCS71
Cervical segment 8ipsiCS81
Spinal cord layer 1 L3ipsiSCL1L31
Spinal cord layer 3 L4ipsiSCL3L41
Spinal cord layer 4 L4ipsiSCL4L41
Lumbar segment 6ipsiL61
Sacral segment 1ipsiSa11
Sacral segment 2ipsiSa21
Anterior ethmoidal nerveipsiaemn-0.5
Nodose ganglionipsiAutoNoG2.5
Carotid bodyipsiCaBo-2
Cutaneous branch of the mylohyoid nerveipsicmyhy2
Frontal nerveipsiFroN-0.5
Greater occipital nerveipsiPNSgo-0.5
Mandibulary nerveipsi5V3-0.5
Mylohyoid nerveipsimyhy2
Cervical oesophagusipsiOrgsOesC0
Subdiaphragmatic oesophagusipsiOrgsSDOes0
TonguecontraOrgOCT3
Hard palateipsiOrgOChp2
Mandibula periosteumipsiOrgMand-0.5
Soft palateipsiOrgSoPa1.5
TongueipsiOrgOCT3
Root of the tongueipsiOrgOCrT3
UvulaipsiOrgPharU2
Stomach wallipsiOrgsStomWS-0.5
Vibrissa slow adapt type IipsiSa1HaFo-0.5
Vibrissa slow adapt type IIipsiSa2HaFo-0.5
Vibrissal follicle complexipsiVFC-0.5
Vibrissal follicle complex B2ipsiVFCB2-0.5
Vibrissal follicle complex D5ipsiVFCD5-0.5
Vibrissal follicle complex E2ipsiVFCE2-0.5
Mystacial guard hairipsiOrgMGuH-0.5
Vitreous humor of eyeipsiOrgVHEye-10
Cricothyroid muscleipsiMuscCT0
Inferior pharyngeal constrictor muscleipsiMusciPC0
Wall of larynxipsiOrgWLary1
LungipsiOrgsLung-10
Trachea sideipsiOrgsTras4
Trachea wallipsiOrgsTrasW0

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





Homepage | Staff | neuroVIISAS | Rat connectome | Other connectomes | Neuroimaging | Neurodegeneration | Students | Links | Publications