University of Rostock

Department of Anatomy

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Rat connectome



Peribrachial region left


Abbreviation
PBR
Color       
Superior regionsMesopontine reticular formation

SynonymsAbbr.Language
Peribrachial area  
Peribrachial regionPBREng
Pontine peribrachial region  
Pontine peribrachial area  
Peribrachial complex Eng

SubregionsSide
Cuneiforme nucleusleft
Lateral portion of the peribrachial complexleft
Parabrachial nucleusleft
Ventral portion of the peribrachial complexleft
Medial half of the peribrachial regionleft
Intracuneiform nucleusleft
Dorsal peribrachial arealeft

Output to

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG3
Red nucleusipsiR2
Prerubral fieldipsiPR2
Substantia nigra A9ipsiSN-0.5
Substantia nigra compact partipsiSNC3
Substantia nigra lateral partipsiSNL2
Substantia nigra reticular partipsiSNR-0.5
Ventral tegmental area A10ipsiVTA2
Ventral tegmental nucleusipsiVTg1
Pedunculopontine tegmental nucleusipsiPPTg2
Pontine reticular nucleusipsiPRN2
Gigantocellular reticular nucleusipsiGi-0.5
Dorsal raphe nucleusipsiDR3
Lateral hypothalamic areaipsiLH2
Parafascicular thalamic nucleusipsiPF2
Mediodorsal thalamic nucleus paralemellar divisionipsiMDpL-0.5
Reuniens thalamic nucleusipsiRe1
Ventromedial thalamic nucleus caudal partipsiVMc1
Ventromedial thalamic nucleus caudal two thirdsipsiVMctt1
Reticular thalamic nucleusipsiRt3
Zona incertaipsiZI0
PallidumipsiPAL3
Globus pallidusipsiGP1
Caudal globus pallidusipsiGPc2
Medial globus pallidusipsiMGP3
Middle part of globus pallidusipsiGPmp2
Rostral globus pallidusipsiGPr2
StriatumipsiSTR1
Caudate putamenipsiCPu2
Subthalamic nucleusipsiSTh3
Cerebral cortexipsiCEC2
Spinal cord layers C1ipsiSCLC12
Spinal cord layers C2ipsiSCLC22
Spinal cord layers C3ipsiSCLC32
Spinal cord layers C4ipsiSCLC42
Spinal cord layers C5ipsiSCLC52
Spinal cord layers C6ipsiSCLC62
Spinal cord layers C7ipsiSCLC72
Spinal cord layers C8ipsiSCLC82
Spinal cord layers T1ipsiSCLT1-0.5
Spinal cord layers T2ipsiSCLT2-0.5
Spinal cord layers T3ipsiSCLT3-0.5
Spinal cord layers T4ipsiSCLT4-0.5
Spinal cord layers T5ipsiSCLT5-0.5
Spinal cord layers T6ipsiSCLT6-0.5
Spinal cord layers T7ipsiSCLT7-0.5
Spinal cord layers T8ipsiSCLT8-0.5
Spinal cord layers T10ipsiSCLT10-0.5
Spinal cord layers T11ipsiSCLT11-0.5
Spinal cord layers T12ipsiSCLT12-0.5
Spinal cord layers T13ipsiSCLT13-0.5
Spinal cord layers L1ipsiSCLL12
Spinal cord layers L2ipsiSCLL22
Spinal cord layers L3ipsiSCLL32
Spinal cord layers L4ipsiSCLL42
Spinal cord layers L5ipsiSCLL52
Spinal cord layers L6ipsiSCLL62
Spinal cord layers S1ipsiSCLS12
Spinal cord layers S2ipsiSCLS22
Spinal cord layers S3ipsiSCLS32
Spinal cord layers S4ipsiSCLS42
Substantia nigra A9contraSN-0.5
Substantia nigra compact partcontraSNC0.5
Substantia nigra reticular partcontraSNR-0.5
Ventral tegmental area A10contraVTA2
Ventral tegmental area A10 lateral partcontraVTAL0.5
Ventral tegmental nucleuscontraVTg0.5
Pedunculopontine tegmental nucleuscontraPPTg1
Pontine reticular nucleuscontraPRN2
Lateral hypothalamic areacontraLH2
Ventromedial thalamic nucleus caudal partcontraVMc1
Ventromedial thalamic nucleus caudal two thirdscontraVMctt1
Zona incertacontraZI0
PallidumcontraPAL1
Globus palliduscontraGP0.5
Caudal globus palliduscontraGPc2
Medial globus palliduscontraMGP0.5
StriatumcontraSTR1
Caudate putamencontraCPu2
Subthalamic nucleuscontraSTh3
Cerebral cortexcontraCEC2

Input from

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG2
Substantia nigra A9ipsiSN2
Substantia nigra compact partipsiSNC2
Substantia nigra lateral partipsiSNL3
Substantia nigra reticular partipsiSNR2
Ventral tegmental area A10ipsiVTA2
Lateral cerebellar nucleusipsiCERL2
Gigantocellular reticular nucleusipsiGi2
Paratrigeminal nucleusipsiPa53
Superior oliveipsiSuOLi2
Diagonal band of BrocaipsiDBB1
Lateral hypothalamic areaipsiLH2
A8 dopamine cells retrorubral groupipsiRRF2
Parafascicular thalamic nucleusipsiPF-0.5
Zona incertaipsiZI2
Amygdaloid complexipsiAC2
Bed nucleus of the stria terminalisipsiBST2
Central amygdaloid nucleusipsiCe2
ClaustrumipsiCl2
Globus pallidusipsiGP2
Caudal globus pallidusipsiGPc2
Medial globus pallidusipsiMGP2
Medial globus pallidus dorsal partipsiMGPd2
Medial globus pallidus rostral partipsiMGPr2
Medial globus pallidus ventral partipsiMGPv2
Rostral globus pallidusipsiGPr0
Ventral pallidumipsiVP1
Medial coreipsiAcbCm2
Rostral pole of the accumbens nucleusipsiAcbRP1
Accumbens nucleus shellipsiAcbSh3
Ventromedial shellipsiAcbShvm2
Caudal striatumipsiCPuc2
Ventral striatumipsiCPuv2
Ventrolateral striatumipsiCPuvl2
Fundus of the striatumipsiFS3
Fundus of the striatum medial partipsiFSm2
Subthalamic nucleusipsiSTh2
Anterior cingulate cortexipsiACC3
Cingulate cortex area 1 caudal partipsiCg1c0.5
Cingulate cortex area 2 caudal partipsiCg2c0.5
Prelimbic cortex dorsal partipsiPrLd0
Prelimbic cortex ventral partipsiPrLv1
Infralimbic cortexipsiIL1
Frontal cortex area 2ipsiFr20.5
Forelimb motor cortexipsiFMCx1
Hindlimb motor cortexipsiHMCx3
Medial agranular prefrontal cortexipsiAGm3
Olfactory tubercleipsiTuO1
Red nucleuscontraR2
Substantia nigra lateral partcontraSNL0.5
Substantia nigra reticular partcontraSNR-0.5
Paratrigeminal nucleuscontraPa53
Spinal trigeminal nucleus caudal part ventral partcontraSp5CV-0.5
Posterolateral hypothalamuscontraPLHY-0.5
Parafascicular thalamic nucleuscontraPF-0.5
Anterior cingulate cortexcontraACC3

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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