University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Diencephalon left


Abbreviation
DEC
Color       
Superior regionsProsencephalon

SynonymsAbbr.Language
Zwischenhirn Ger
Diencephalic region Eng
DiencephalonDECEng
Interbrain  

SubregionsSide
Circumventricular organsleft
Hypothalamusleft
Infundibular reccessleft
Infundibular stemleft
Mammillary bodyleft
Other nucleileft
Perifornical nucleusleft
Periventricular fiber systemleft
Retrochiasmatic arealeft
Retroethmoid nucleusleft
Subbrachial nucleusleft
Subincertal nucleusleft
Supraoculomotor capleft
Thalamusleft
Tuber cinereum arealeft
Visual systemleft
Epithalamusleft
Pituitary glandleft

Output to

NameSideAbbr.WeightDetails
Superior colliculusipsiSC0
Pedunculopontine tegmental nucleus pars compactaipsiPPNC3
Pontine reticular nucleusipsiPRN-0.5
Parabrachial nucleusipsiPB-0.5
MyelencephalonipsiMYC3
Caudal ventrolateral medulla lateral partipsiCVLMl-0.5
Median eminenceipsiME-0.5
Medial septal nucleusipsiMS-0.5
Arcuate nucleusipsiArc-0.5
Forelimb motor cortexipsiFMCx3
Caudal forelimb motor areaipsiCFMA3
Lateral part of the granular cortex of forelimb motor regionsipsiLFMCx3
Pontine reticular nucleuscontraPRN-0.5

Input from

NameSideAbbr.WeightDetails
Ventral medullary tegmentumipsiVMTGA-0.5
Deep cerebellar nucleiipsiDNC-0.5
Cuneiforme nucleusipsiCnF3
Gigantocellular reticular nucleusipsiGi3
Subnucleus reticularis dorsalisipsiSRD-0.5
C1 adrenaline cells caudal partipsiC1c-0.5
Caudal part of the C2 adrenaline cellsipsiCC2-0.5
Spinal vestibular nucleusipsiSpVe-0.5
Lateral vestibular nucleusipsiLVe-0.5
Nucleus of the solitary tractipsiSol-0.5
Nucleus of the solitary tract commissural partipsiSolC-0.5
Raphe nucleiipsiRAN0
A1 noradrenergic cellsipsiA1-0.5
A2 noradrenergic cellsipsiA2-0.5
Dorsal column nucleiipsiDCN-0.5
Medial septal nucleus medial partipsiMSm-0.5
Retrosplenial agranular cortexipsiRSA-0.5
Spinal vestibular nucleuscontraSpVe-0.5
Medial vestibular nucleuscontraMVe-0.5
Dorsal raphe nucleus caudal partcontraDRC3

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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